pycom15g23810

Cell division cycle-associated protein 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001920
Physical Location & Seq
Reverse (-)
17955258 .. 17957885
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23810.1

Sequence Viewer

Length: 1167 bp
ATGCCAACTCTAGGAAAGAAGACCGTTGCCCTGGAATCCTCAGCAAACCCTAACCCTAGAAGCAACAATGAGCACCTCCAAACCCCCAAGTCTTTGTACGAGCAGTCCAGAGAAGATCGAATCAGAGAAAACCGCGAAAGAATGCAAAAGCTCGGCATCGTTGACATCTCTCTTCAGCTCAAATCAAACATTCACTCGAAGAGATCAACAGCAAAGAGCTACTCCAACCGCTGTACGACGCCGTCTGGGCCCCCTTCCATTCGGACGCTAGGACCCACTCGTCGTTCTTCTAGATTGAAGAATGCTACACCAGTGAGCTACGCGGAGGTGCATGTGTTGAAGAAGGATGAGGCTTCGTACATGAAGGGTATTATGCTGGAGGAGGGTGAAAGGCCGGAGATTTACACGGAGGAGCATGAGAAGCTGTTAGGCAACACTGATAAGACCTGGACTCTGTTTGTGGATGGTTATGGAAAAGATGGAAAACGGATTTATGACCCGGTTAGAGGAAAGACTTGCCATCAATGCAGGCAGAAAACTCTGGGTCATCATACTCAATGTAACCAATGCAACAGGATCCAAGGACAGTTTTGTGGCGATTGTTTGTACATGAGATATGGGGAACATGTAATTGAAGCCAATCAGAATCCAGATTGGATTTGCCCTGTCTGCCGTGGAATCTGCAACTGTAGTTTTTGTCGGACGAAAAAAGGGTGGCCTCCTACTGGCATCCTCTACAAGAAGATATCGCAACTAGGTTTCAAATCAGTTGCACACTATCTCATTCACACCCAACGGGGACAGACAAATTCAGGAGAAAATCTGGAAACCACCAATCCAGTTTCTGCAAAGAGGTCATTGCAATTCCCAGATGTAGATGCATCATGTGAAGAAATTGTCAAGGACGACAATGATATTGGAGCAATAAAACCTCTAGTTGGCCAAGAAAGAGATGACGAGTTTAAGAGTGAGAATGAGAATGAAATCAAGAGTAGCACAAATCTGGATATTAACAACCAAACTTCTGCAGAGAGGGTATTGTCCTTTTCAGATATGGTACAACAGTCTGAAAATTTTAGATCGTCTGAGGTCGACCACAAGGTTGGTGACCACCTTGGATTGTCAAAGCTTCAATCTGAAAGTGGCAGAGATCGATCGTCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

389

Amino Acids

43.93

Weight (kDa)

8.58

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 165 - 261 2.1e-41 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 279
AccI GTMKAC 1 cut(s) 1092
AccII CGCG 2 cut(s) 135, 323
AciI CCGC 3 cut(s) 133, 229, 323
AclWI GGATC 2 cut(s) 571, 584
AcoI YGGCCR 1 cut(s) 940
AcsI RAATTY 2 cut(s) 808, 1072
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 5 cut(s) 98, 235, 359, 608, 1059
AfiI CCNNNNNNNGG 4 cut(s) 11, 506, 725, 938
AflIII ACRYGT 1 cut(s) 625
AgsI TTSAA 5 cut(s) 298, 340, 635, 763, 1133
AjnI CCWGG 2 cut(s) 30, 446
AluBI AGCT 6 cut(s) 151, 178, 219, 318, 424, 1129
AluI AGCT 6 cut(s) 151, 178, 219, 318, 424, 1129
Alw21I GWGCWC 1 cut(s) 75
AlwI GGATC 2 cut(s) 571, 584
AlwNI CAGNNNCTG 1 cut(s) 845
AoxI GGCC 4 cut(s) 248, 392, 716, 940
ApaI GGGCCC 1 cut(s) 252
ApoI RAATTY 2 cut(s) 808, 1072
AspS9I GGNCC 3 cut(s) 248, 249, 272
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 2 cut(s) 398, 1118
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 252
BaeI ACNNNNGTAYC 2 cut(s) 1049, 1082
BalI TGGCCA 1 cut(s) 942
BamHI GGATCC 1 cut(s) 576
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 40
BccI CCATC 3 cut(s) 458, 473, 528
BceAI ACGGC 2 cut(s) 226, 657
BciT130I CCWGG 2 cut(s) 32, 448
BcnI CCSGG 1 cut(s) 500
BfaI CTAG 6 cut(s) 11, 57, 269, 291, 755, 935
BfmI CTRYAG 2 cut(s) 688, 1026
BglI GCCNNNNNGGC 1 cut(s) 247
Bme1390I CCNGG 3 cut(s) 32, 448, 500
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 248, 249, 272
BmiI GGNNCC 4 cut(s) 250, 251, 274, 578
BmrFI CCNGG 3 cut(s) 32, 448, 500
BmsI GCATC 4 cut(s) 165, 738, 868, 890
BpiI GAAGAC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 1153
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 4 cut(s) 30, 580, 673, 1114
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 506, 725, 938
Bse1I ACTGG 3 cut(s) 311, 730, 839
Bse3DI GCAATG 1 cut(s) 857
BseBI CCWGG 2 cut(s) 32, 448
BseCI ATCGAT 1 cut(s) 1153
BseDI CCNNGG 4 cut(s) 30, 580, 673, 1114
BseGI GGATG 3 cut(s) 352, 469, 729
BseLI CCNNNNNNNGG 4 cut(s) 11, 506, 725, 938
BseMI GCAATG 1 cut(s) 857
BseMII CTCAG 2 cut(s) 54, 1077
BseNI ACTGG 3 cut(s) 311, 730, 839
BseRI GAGGAG 2 cut(s) 395, 425
BseSI GKGCMC 1 cut(s) 252
Bsh1236I CGCG 2 cut(s) 135, 323
Bsh1285I CGRYCG 1 cut(s) 1157
BshFI GGCC 4 cut(s) 250, 394, 718, 942
BshVI ATCGAT 1 cut(s) 1153
BsiEI CGRYCG 1 cut(s) 1157
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 2 cut(s) 395, 500
BslFI GGGAC 1 cut(s) 813
BslI CCNNNNNNNGG 4 cut(s) 11, 506, 725, 938
BsmFI GGGAC 1 cut(s) 813
BsmI GAATGC 2 cut(s) 147, 307
BsnI GGCC 4 cut(s) 250, 394, 718, 942
Bsp120I GGGCCC 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 75, 252
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 6 cut(s) 115, 203, 576, 1079, 1150, 1154
BspACI CCGC 3 cut(s) 133, 229, 323
BspANI GGCC 4 cut(s) 250, 394, 718, 942
BspCNI CTCAG 2 cut(s) 53, 1078
BspDI ATCGAT 1 cut(s) 1153
BspFNI CGCG 2 cut(s) 135, 323
BspLI GGNNCC 4 cut(s) 250, 251, 274, 578
BspMAI CTGCAG 1 cut(s) 1030
BspPI GGATC 2 cut(s) 571, 584
BsrDI GCAATG 1 cut(s) 857
BsrGI TGTACA 1 cut(s) 606
BsrI ACTGG 3 cut(s) 311, 730, 839
BssECI CCNNGG 4 cut(s) 30, 580, 673, 1114
BssMI GATC 6 cut(s) 115, 203, 576, 1079, 1150, 1154
BssNI GRCGYC 1 cut(s) 239
BssT1I CCWWGG 2 cut(s) 580, 1114
Bst2UI CCWGG 2 cut(s) 32, 448
Bst4CI ACNGT 4 cut(s) 25, 588, 689, 1065
Bst6I CTCTTC 2 cut(s) 177, 194
BstACI GRCGYC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 606
BstC8I GCNNGC 1 cut(s) 530
BstDEI CTNAG 2 cut(s) 40, 1086
BstDSI CCRYGG 1 cut(s) 673
BstEII GGTNACC 1 cut(s) 1106
BstF5I GGATG 3 cut(s) 352, 469, 729
BstFNI CGCG 2 cut(s) 135, 323
BstKTI GATC 6 cut(s) 118, 206, 579, 1082, 1153, 1157
BstMBI GATC 6 cut(s) 115, 203, 576, 1079, 1150, 1154
BstMCI CGRYCG 1 cut(s) 1157
BstMWI GCNNNNNNNGC 4 cut(s) 247, 421, 525, 669
BstNI CCWGG 2 cut(s) 32, 448
BstNSI RCATGY 2 cut(s) 335, 629
BstPI GGTNACC 1 cut(s) 1106
BstSCI CCNGG 3 cut(s) 30, 446, 498
BstSFI CTRYAG 2 cut(s) 688, 1026
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 2 cut(s) 135, 323
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 576
BstXI CCANNNNNNTGG 1 cut(s) 1103
BstYI RGATCY 1 cut(s) 576
Bsu15I ATCGAT 1 cut(s) 1153
BsuRI GGCC 4 cut(s) 250, 394, 718, 942
BsuTUI ATCGAT 1 cut(s) 1153
BtgI CCRYGG 1 cut(s) 673
BtsCI GGATG 3 cut(s) 352, 469, 729
BtsIMutI CAGTG 2 cut(s) 318, 435
Cac8I GCNNGC 1 cut(s) 530
CaiI CAGNNNCTG 1 cut(s) 845
Cfr13I GGNCC 3 cut(s) 248, 249, 272
ClaI ATCGAT 1 cut(s) 1153
CseI GACGC 2 cut(s) 247, 274
Csp6I GTAC 5 cut(s) 97, 234, 358, 607, 1058
CviAII CATG 6 cut(s) 332, 361, 416, 610, 626, 885
CviQI GTAC 5 cut(s) 97, 234, 358, 607, 1058
DdeI CTNAG 2 cut(s) 40, 1086
DpnI GATC 6 cut(s) 117, 205, 578, 1081, 1152, 1156
DpnII GATC 6 cut(s) 115, 203, 576, 1079, 1150, 1154
DrdI GACNNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 940
Eam1104I CTCTTC 2 cut(s) 177, 194
EarI CTCTTC 2 cut(s) 177, 194
Eco130I CCWWGG 2 cut(s) 580, 1114
Eco24I GRGCYC 1 cut(s) 252
Eco32I GATATC 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 1106
EcoO109I RGGNCCY 2 cut(s) 249, 272
EcoO65I GGTNACC 1 cut(s) 1106
EcoRII CCWGG 2 cut(s) 30, 446
EcoRV GATATC 1 cut(s) 747
EcoT14I CCWWGG 2 cut(s) 580, 1114
EcoT22I ATGCAT 1 cut(s) 883
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 2 cut(s) 580, 1114
FaeI CATG 6 cut(s) 335, 364, 419, 613, 629, 888
FaqI GGGAC 1 cut(s) 813
FatI CATG 6 cut(s) 331, 360, 415, 609, 625, 884
FblI GTMKAC 1 cut(s) 1092
FokI GGATG 3 cut(s) 359, 476, 716
FriOI GRGCYC 1 cut(s) 252
FspBI CTAG 6 cut(s) 11, 57, 269, 291, 755, 935
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 4 cut(s) 250, 394, 718, 942
HapII CCGG 2 cut(s) 395, 500
HgaI GACGC 2 cut(s) 247, 274
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 6 cut(s) 335, 364, 419, 613, 629, 888
HincII GTYRAC 2 cut(s) 163, 1093
HindII GTYRAC 2 cut(s) 163, 1093
HindIII AAGCTT 1 cut(s) 1127
HinfI GANTC 5 cut(s) 35, 120, 451, 646, 678
HpaII CCGG 2 cut(s) 395, 500
HphI GGTGA 2 cut(s) 398, 1118
Hpy166II GTNNAC 2 cut(s) 163, 1093
Hpy188I TCNGA 8 cut(s) 125, 264, 645, 702, 1051, 1069, 1087, 1138
Hpy188III TCNNGA 7 cut(s) 108, 291, 650, 813, 824, 988, 1004
Hpy8I GTNNAC 2 cut(s) 163, 1093
Hpy99I CGWCG 2 cut(s) 241, 285
HpyAV CCTTC 3 cut(s) 264, 337, 358
HpyCH4III ACNGT 4 cut(s) 25, 588, 689, 1065
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 421, 525, 669
HpyF3I CTNAG 2 cut(s) 40, 1086
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 6 cut(s) 335, 364, 419, 613, 629, 888
Kzo9I GATC 6 cut(s) 115, 203, 576, 1079, 1150, 1154
LmnI GCTCC 2 cut(s) 412, 920
LweI GCATC 4 cut(s) 165, 738, 868, 890
MaeI CTAG 6 cut(s) 11, 57, 269, 291, 755, 935
MaeIII GTNAC 2 cut(s) 560, 1106
MalI GATC 6 cut(s) 117, 205, 578, 1081, 1152, 1156
MboI GATC 6 cut(s) 115, 203, 576, 1079, 1150, 1154
MboII GAAGA 9 cut(s) 31, 125, 164, 211, 279, 310, 352, 754, 902
MflI RGATCY 1 cut(s) 576
MhlI GDGCHC 2 cut(s) 75, 252
MlsI TGGCCA 1 cut(s) 942
MluCI AATT 5 cut(s) 630, 808, 863, 894, 1072
MluNI TGGCCA 1 cut(s) 942
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 2 cut(s) 249, 680
Mox20I TGGCCA 1 cut(s) 942
Mph1103I ATGCAT 1 cut(s) 883
MscI TGGCCA 1 cut(s) 942
MseI TTAA 2 cut(s) 963, 1011
Msp20I TGGCCA 1 cut(s) 942
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 2 cut(s) 395, 500
MspR9I CCNGG 3 cut(s) 32, 448, 500
Mva1269I GAATGC 2 cut(s) 147, 307
MvaI CCWGG 2 cut(s) 32, 448
MvnI CGCG 2 cut(s) 135, 323
MwoI GCNNNNNNNGC 4 cut(s) 247, 421, 525, 669
NciI CCSGG 1 cut(s) 500
NdeII GATC 6 cut(s) 115, 203, 576, 1079, 1150, 1154
NlaIII CATG 6 cut(s) 335, 364, 419, 613, 629, 888
NlaIV GGNNCC 4 cut(s) 250, 251, 274, 578
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 1106
NsiI ATGCAT 1 cut(s) 883
NspI RCATGY 2 cut(s) 335, 629
PciI ACATGT 1 cut(s) 625
PctI GAATGC 2 cut(s) 147, 307
PfeI GAWTC 4 cut(s) 35, 120, 646, 678
PflFI GACNNNGTC 1 cut(s) 241
Ple19I CGATCG 1 cut(s) 1157
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PpuMI RGGWCCY 1 cut(s) 272
PscI ACATGT 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 2 cut(s) 30, 446
PspEI GGTNACC 1 cut(s) 1106
PspGI CCWGG 2 cut(s) 30, 446
PspN4I GGNNCC 4 cut(s) 250, 251, 274, 578
PspOMI GGGCCC 1 cut(s) 248
PspPI GGNCC 3 cut(s) 248, 249, 272
PspPPI RGGWCCY 1 cut(s) 272
PstI CTGCAG 1 cut(s) 1030
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 1 cut(s) 576
PsyI GACNNNGTC 1 cut(s) 241
PvuI CGATCG 1 cut(s) 1157
RsaI GTAC 5 cut(s) 98, 235, 359, 608, 1059
RsaNI GTAC 5 cut(s) 97, 234, 358, 607, 1058
SalI GTCGAC 1 cut(s) 1091
SaqAI TTAA 2 cut(s) 963, 1011
Sau3AI GATC 6 cut(s) 115, 203, 576, 1079, 1150, 1154
Sau96I GGNCC 3 cut(s) 248, 249, 272
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 3 cut(s) 32, 448, 500
SduI GDGCHC 2 cut(s) 75, 252
SfaNI GCATC 4 cut(s) 165, 738, 868, 890
SfcI CTRYAG 2 cut(s) 688, 1026
SinI GGWCC 1 cut(s) 272
Sse9I AATT 5 cut(s) 630, 808, 863, 894, 1072
SsiI CCGC 3 cut(s) 133, 229, 323
SspMI CTAG 6 cut(s) 11, 57, 269, 291, 755, 935
StyD4I CCNGG 3 cut(s) 30, 446, 498
StyI CCWWGG 2 cut(s) 580, 1114
TaaI ACNGT 4 cut(s) 25, 588, 689, 1065
TaqI TCGA 4 cut(s) 118, 197, 1092, 1153
TasI AATT 5 cut(s) 630, 808, 863, 894, 1072
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 4 cut(s) 35, 120, 646, 678
Tru1I TTAA 2 cut(s) 963, 1011
Tru9I TTAA 2 cut(s) 963, 1011
TscAI CASTG 2 cut(s) 318, 442
TseFI GTSAC 1 cut(s) 1106
Tsp45I GTSAC 1 cut(s) 1106
TspDTI ATGAA 2 cut(s) 377, 996
TspGWI ACGGA 2 cut(s) 422, 502
TspRI CASTG 2 cut(s) 318, 442
Tth111I GACNNNGTC 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 808, 1072
XbaI TCTAGA 1 cut(s) 290
XceI RCATGY 2 cut(s) 335, 629
XmiI GTMKAC 1 cut(s) 1092
XspI CTAG 6 cut(s) 11, 57, 269, 291, 755, 935
Zsp2I ATGCAT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.