Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001920

Physical Location & Seq

Genomic Coordinates Reverse (-)

14176711 .. 14179945

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G113400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGGTTCAGAGAAATCGAGACCAAGGCACCTTGGAAATGAACAGCGGGGAAGGAACCGTAGAGAATGGAACTGCTGGGGTTTCTGGGTACGAGCAGTTCAGGGACCAAAGGATCAAAGAGAACAATGAGAGATTGCAGAAGCTGGGAATTTTGGACCTTGCTCTGAAGCTGAAGCCCAAAGCTGCCACTCCAAAACGTTCCCAGAGTCAGAGAGATTCGTCTGTTCAGACCAAAATCCACAAGTCCCCAAGGCGCTCTTCTAGGTTGAAGACTGTGGCTCCAGTAAGTTATGTGGAAATTAGAAAGCCTAAAGAGAAGGAAGAGACCTCAGAGAGTATTAATATTTATATCAAGGAGGGATCAAAGCGAGAGGTTTATACAGAGGAACATGAGAAGCAGTTGGGGGATTGTAATACAAGCTGGCCCCTGGGTGTGGATTTGGTTAAGGGAGAAACTTGCCACCAATGCAGGCATAAAACTCTTGGCCAGCATACACATTGCTGCAAATGTGACTCGGTCCAAGGGCAGTTATGTGGAGATTGCTTGTTCACGAGATATGGAGAGAATATGCTTGAAGCCAACCAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGACATCTGCAACTGCAATCTTTGCCGTAAAGCAAAAGGGTGGGAACCCACTGGTAATCTGTATTGGAAGGTCTCAAAACTGGGTTACAAGTCTCTGGCGCATTATCTTATTCAAACCCACCGTTCCCAGATAAAATCAGAAACCTCAGGTGCAGAGGTTGCTGATGAGGGATCTGAGCCATCTTCACATGATGAATTTCTGGAAAGCACAACACATCAACCTGAGGACTTAAGGCACGATGAGGGGTTCTCCACAACGGAAGAAAAAATGGGAGAGGTGCACCTCCTGGGCATCAAGCATGTTGATGTCAATGATGTGGGTAAGCTAGATGATGTTGCTGCTGGTGATGCTAATGATGGTGAGGCAAAGGAAAAGCCAAGGAGAGAAACAAGCGTGAGCAGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

342

Amino Acids

38.37

Weight (kDa)

6.37

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37110 AT4G37110 AT4G37110 AT4G37110
fragaria_vesca	FvH4_1g14770 FvH4_1g14770 FvH4_1g14770 FvH4_2g07200 FvH4_2g07200
malus_domestica	MD02G1160900.v1.1 MD05G1072600.v1.1 MD10G1087200.v1.1 MD10G1087400.v1.1 MD15G1275000.v1.1
prunus_persica	Prupe.7G142700_v2.0.a1 Prupe.7G142700_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113300_v2.0.a1 Prupe.8G113400_v2.0.a1 Prupe.8G113400_v2.0.a1
pyrus_communis	pycom02g12700 pycom05g06480 pycom10g06970 pycom10g08140 pycom15g23810
rosa_chinensis	RchiOBHm_Chr2g0103711 RchiOBHm_Chr6g0259631 RchiOBHm_Chr6g0259651
rosa_laevigata	RLG00000014516 RLG00000017251
rosa_multiflora	Rmu_sc0000536.1_g000015
rosa_roxburghii	Rroxscaffold_2G00139460 Rroxscaffold_7G00206930
rosa_rugosa	Rorug02G0116800 Rorug05G0590100
rosa_samantha	Rh2AG165600 Rh2BG172900 Rh2CG171600 Rh2DG171200 Rh6AG106300 Rh6BG100800 Rh6BG100900 Rh6CG095400 Rh6DG089300
rosa_wichuraiana	Rw2G012970 Rw6G009190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AciI	CCGC	1 cut(s)	48
AclI	AACGTT	1 cut(s)	199
AclWI	GGATC	3 cut(s)	122, 370, 796
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	2 cut(s)	150, 812
AcuI	CTGAAG	2 cut(s)	188, 194
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflII	CTTAAG	1 cut(s)	847
AgsI	TTSAA	3 cut(s)	271, 578, 731
AjnI	CCWGG	2 cut(s)	429, 903
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
AluBI	AGCT	5 cut(s)	145, 172, 185, 423, 943
AluI	AGCT	5 cut(s)	145, 172, 185, 423, 943
Alw21I	GWGCWC	1 cut(s)	900
Alw26I	GTCTC	4 cut(s)	15, 320, 694, 714
Alw44I	GTGCAC	1 cut(s)	896
AlwI	GGATC	3 cut(s)	122, 370, 796
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	2 cut(s)	425, 487
ApaLI	GTGCAC	1 cut(s)	896
ApeKI	GCWGC	3 cut(s)	185, 504, 956
ApoI	RAATTY	2 cut(s)	150, 812
AseI	ATTAAT	1 cut(s)	342
AspLEI	GCGC	2 cut(s)	258, 718
AspS9I	GGNCC	4 cut(s)	106, 157, 426, 520
AsuHPI	GGTGA	2 cut(s)	974, 989
AvaII	GGWCC	3 cut(s)	106, 157, 520
AxyI	CCTNAGG	2 cut(s)	763, 840
BaeGI	GKGCMC	1 cut(s)	900
BalI	TGGCCA	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	29
BauI	CACGAG	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	900
BbvI	GCAGC	3 cut(s)	172, 491, 943
BccI	CCATC	2 cut(s)	805, 968
BceAI	ACGGC	1 cut(s)	627
BciT130I	CCWGG	2 cut(s)	431, 905
BcoDI	GTCTC	4 cut(s)	15, 320, 694, 714
BfaI	CTAG	2 cut(s)	264, 944
BfoI	RGCGCY	1 cut(s)	259
BfrI	CTTAAG	1 cut(s)	847
BisI	GCNGC	3 cut(s)	186, 505, 957
BlsI	GCNGC	3 cut(s)	187, 506, 958
Bme1390I	CCNGG	2 cut(s)	431, 905
Bme18I	GGWCC	3 cut(s)	106, 157, 520
BmgT120I	GGNCC	4 cut(s)	106, 157, 426, 520
BmiI	GGNNCC	6 cut(s)	31, 58, 107, 282, 428, 663
BmrFI	CCNGG	2 cut(s)	431, 905
BmrI	ACTGGG	1 cut(s)	707
BmsI	GCATC	2 cut(s)	918, 955
BmuI	ACTGGG	1 cut(s)	707
BpiI	GAAGAC	1 cut(s)	278
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
BpmI	CTGGAG	1 cut(s)	267
BsaI	GGTCTC	3 cut(s)	15, 320, 694
BsaJI	CCNNGG	8 cut(s)	25, 33, 251, 429, 430, 523, 904, 995
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	3 cut(s)	284, 673, 702
Bse21I	CCTNAGG	2 cut(s)	763, 840
Bse3DI	GCAATG	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	431, 905
BseDI	CCNNGG	8 cut(s)	25, 33, 251, 429, 430, 523, 904, 995
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	4 cut(s)	345, 777, 783, 831
BseNI	ACTGG	3 cut(s)	284, 673, 702
BseSI	GKGCMC	1 cut(s)	900
BseXI	GCAGC	3 cut(s)	172, 491, 943
BseYI	CCCAGC	2 cut(s)	77, 145
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	2 cut(s)	427, 489
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	900
BslFI	GGGAC	3 cut(s)	119, 232, 632
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	4 cut(s)	15, 320, 694, 714
BsmFI	GGGAC	3 cut(s)	119, 232, 632
BsnI	GGCC	2 cut(s)	427, 489
Bso31I	GGTCTC	3 cut(s)	15, 320, 694
Bsp1286I	GDGCHC	1 cut(s)	900
Bsp143I	GATC	3 cut(s)	114, 362, 788
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	427, 489
BspCNI	CTCAG	4 cut(s)	344, 776, 784, 832
BspLI	GGNNCC	6 cut(s)	31, 58, 107, 282, 428, 663
BspPI	GGATC	3 cut(s)	122, 370, 796
BspQI	GCTCTTC	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	29
BspTI	CTTAAG	1 cut(s)	847
BspTNI	GGTCTC	3 cut(s)	15, 320, 694
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	3 cut(s)	284, 673, 702
BssECI	CCNNGG	8 cut(s)	25, 33, 251, 429, 430, 523, 904, 995
BssMI	GATC	3 cut(s)	114, 362, 788
BssSI	CACGAG	1 cut(s)	553
BssT1I	CCWWGG	5 cut(s)	25, 33, 251, 523, 995
Bst2BI	CACGAG	1 cut(s)	553
Bst2UI	CCWGG	2 cut(s)	431, 905
Bst4CI	ACNGT	3 cut(s)	61, 277, 740
Bst6I	CTCTTC	2 cut(s)	265, 318
BstAFI	CTTAAG	1 cut(s)	847
BstAPI	GCANNNNNTGC	2 cut(s)	639, 776
BstC8I	GCNNGC	3 cut(s)	425, 473, 491
BstDEI	CTNAG	4 cut(s)	331, 763, 792, 840
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	258, 718
BstKTI	GATC	3 cut(s)	117, 365, 791
BstMAI	GTCTC	4 cut(s)	15, 320, 694, 714
BstMBI	GATC	3 cut(s)	114, 362, 788
BstMWI	GCNNNNNNNGC	4 cut(s)	468, 639, 776, 965
BstNI	CCWGG	2 cut(s)	431, 905
BstNSI	RCATGY	1 cut(s)	920
BstSCI	CCNGG	2 cut(s)	429, 903
BstSLI	GKGCMC	1 cut(s)	900
BstV1I	GCAGC	3 cut(s)	172, 491, 943
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	788
BstYI	RGATCY	1 cut(s)	788
Bsu36I	CCTNAGG	2 cut(s)	763, 840
BsuRI	GGCC	2 cut(s)	427, 489
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	3 cut(s)	425, 473, 491
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	2 cut(s)	258, 718
Cfr13I	GGNCC	4 cut(s)	106, 157, 426, 520
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	3 cut(s)	392, 806, 917
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	4 cut(s)	331, 763, 792, 840
DpnI	GATC	3 cut(s)	116, 364, 790
DpnII	GATC	3 cut(s)	114, 362, 788
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	2 cut(s)	265, 318
EarI	CTCTTC	2 cut(s)	265, 318
Eco130I	CCWWGG	5 cut(s)	25, 33, 251, 523, 995
Eco31I	GGTCTC	3 cut(s)	15, 320, 694
Eco47I	GGWCC	3 cut(s)	106, 157, 520
Eco57I	CTGAAG	2 cut(s)	188, 194
Eco81I	CCTNAGG	2 cut(s)	763, 840
EcoRII	CCWGG	2 cut(s)	429, 903
EcoT14I	CCWWGG	5 cut(s)	25, 33, 251, 523, 995
ErhI	CCWWGG	5 cut(s)	25, 33, 251, 523, 995
FaeI	CATG	3 cut(s)	395, 809, 920
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FaqI	GGGAC	3 cut(s)	119, 232, 632
FatI	CATG	3 cut(s)	391, 805, 916
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	3 cut(s)	186, 505, 957
Fsp4HI	GCNGC	3 cut(s)	186, 505, 957
FspBI	CTAG	2 cut(s)	264, 944
GlaI	GCGC	2 cut(s)	257, 717
GluI	GCNGC	3 cut(s)	186, 505, 957
GsaI	CCCAGC	2 cut(s)	81, 149
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	2 cut(s)	427, 489
HhaI	GCGC	2 cut(s)	258, 718
Hin1II	CATG	3 cut(s)	395, 809, 920
Hin6I	GCGC	2 cut(s)	256, 716
HinP1I	GCGC	2 cut(s)	256, 716
HinfI	GANTC	3 cut(s)	208, 218, 515
HphI	GGTGA	2 cut(s)	974, 989
Hpy166II	GTNNAC	2 cut(s)	552, 898
Hpy188I	TCNGA	7 cut(s)	12, 168, 213, 231, 334, 757, 793
Hpy188III	TCNNGA	5 cut(s)	20, 553, 593, 617, 818
Hpy8I	GTNNAC	2 cut(s)	552, 898
HpyAV	CCTTC	3 cut(s)	47, 313, 679
HpyCH4III	ACNGT	3 cut(s)	61, 277, 740
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	7 cut(s)	139, 471, 507, 627, 633, 770, 898
HpyF10VI	GCNNNNNNNGC	4 cut(s)	468, 639, 776, 965
HpyF3I	CTNAG	4 cut(s)	331, 763, 792, 840
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	3 cut(s)	395, 809, 920
HspAI	GCGC	2 cut(s)	256, 716
Kzo9I	GATC	3 cut(s)	114, 362, 788
LguI	GCTCTTC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	3 cut(s)	172, 491, 943
LweI	GCATC	2 cut(s)	918, 955
MaeI	CTAG	2 cut(s)	264, 944
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	2 cut(s)	512, 701
MalI	GATC	3 cut(s)	116, 364, 790
MboI	GATC	3 cut(s)	114, 362, 788
MboII	GAAGA	5 cut(s)	252, 283, 335, 792, 890
MflI	RGATCY	1 cut(s)	788
MhlI	GDGCHC	1 cut(s)	900
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	3 cut(s)	150, 300, 812
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	217, 509
Mox20I	TGGCCA	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	3 cut(s)	342, 447, 848
MslI	CAYNNNNRTG	1 cut(s)	921
Msp20I	TGGCCA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	48
MspCI	CTTAAG	1 cut(s)	847
MspR9I	CCNGG	2 cut(s)	431, 905
MvaI	CCWGG	2 cut(s)	431, 905
MwoI	GCNNNNNNNGC	4 cut(s)	468, 639, 776, 965
NdeII	GATC	3 cut(s)	114, 362, 788
NlaIII	CATG	3 cut(s)	395, 809, 920
NlaIV	GGNNCC	6 cut(s)	31, 58, 107, 282, 428, 663
NmuCI	GTSAC	1 cut(s)	512
NspI	RCATGY	1 cut(s)	920
PasI	CCCWGGG	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	218
PflFI	GACNNNGTC	1 cut(s)	518
PkrI	GCNGC	3 cut(s)	187, 506, 958
PleI	GAGTC	2 cut(s)	216, 509
PpsI	GAGTC	2 cut(s)	216, 509
PshBI	ATTAAT	1 cut(s)	342
Psp1406I	AACGTT	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	429, 903
PspFI	CCCAGC	2 cut(s)	77, 145
PspGI	CCWGG	2 cut(s)	429, 903
PspN4I	GGNNCC	6 cut(s)	31, 58, 107, 282, 428, 663
PspPI	GGNCC	4 cut(s)	106, 157, 426, 520
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	788
PsyI	GACNNNGTC	1 cut(s)	518
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	921
SapI	GCTCTTC	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	342, 447, 848
SatI	GCNGC	3 cut(s)	186, 505, 957
Sau3AI	GATC	3 cut(s)	114, 362, 788
Sau96I	GGNCC	4 cut(s)	106, 157, 426, 520
SchI	GAGTC	2 cut(s)	217, 509
ScrFI	CCNGG	2 cut(s)	431, 905
SduI	GDGCHC	1 cut(s)	900
SfaNI	GCATC	2 cut(s)	918, 955
SinI	GGWCC	3 cut(s)	106, 157, 520
SmiMI	CAYNNNNRTG	1 cut(s)	921
SmlI	CTYRAG	1 cut(s)	847
SmoI	CTYRAG	1 cut(s)	847
Sse9I	AATT	3 cut(s)	150, 300, 812
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	2 cut(s)	264, 944
StyD4I	CCNGG	2 cut(s)	429, 903
StyI	CCWWGG	5 cut(s)	25, 33, 251, 523, 995
TaaI	ACNGT	3 cut(s)	61, 277, 740
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	19
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	3 cut(s)	150, 300, 812
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	3 cut(s)	342, 447, 848
Tru9I	TTAA	3 cut(s)	342, 447, 848
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	3 cut(s)	185, 504, 956
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	56, 825
TspGWI	ACGGA	1 cut(s)	890
TspRI	CASTG	1 cut(s)	673
Tth111I	GACNNNGTC	1 cut(s)	518
Vha464I	CTTAAG	1 cut(s)	847
VneI	GTGCAC	1 cut(s)	896
VpaK11BI	GGWCC	3 cut(s)	106, 157, 520
VspI	ATTAAT	1 cut(s)	342
XapI	RAATTY	2 cut(s)	150, 812
XceI	RCATGY	1 cut(s)	920
XspI	CTAG	2 cut(s)	264, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.