Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Reverse (-)

17758232 .. 17759746

Gene Structure 1515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGAAGAGCACCGTGCTGCGACAAGATGGCGGTGAAGAAAGGGCCATGGTCGACGGAGGAAGATGCCGTGCTTAAGTCTTACATCGAAAAACACGGCACCGGCAACAACTGGATTTCCCTCCCTCAGAGAATTGGGATAAAGAGGTGCGGGAAGAGTTGTCGTTTGAGATGGCTTAATTACTTGAGGCCTAACTTAAAGCATGGAGGCTTCACCGATGAAGAAGATTACATCATTTGCAGCCTTTACATTACTATTGGAAGCAGGTGGTCTATCATTGCTTCACAATTACCGGGAAGAACAGACAACGACATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCTATTGAGCAAGCAAGGGAAGGCATTTCATCAACAACTTAATGTCAAATTTGAGCGTGGAACAACATCATCATCATCGAGTCAGAACCAGATCCAAATCTTTCATGATGAGAACACCAAATCGAACCAAACATTATATAATCAAGTGGTGGATCCATCAATGAGAGCTTTTGCCATGGAAGAACAAAGCATGATCAAGAATCAGATATTGGAACCATTTTCTTGGGAACCAAACAAGGTTTTGTTTGATGTTGATTATGATGCAGCTGCTTCATCTTATCATCATCATGCATCCCCATCATTGAACTCCATGAGCAGTACTAGTAGTATTGGTACTAATAATTCATCTTTACAAATGTCTCACTACACCGTCAATCACAATGATCATGATCAACCAGATATGTTCTTTATGGACGGGTTTGAGAATTTCCAGGCCGAGCTATTTGATGAGATAGCCAACAACAACACGGTAGAAAATGGCTTTGACGGAACCGAGATCCTGATCAATAACAACTACTTGGATCACGATATTAGCTCCTTCATTGATTATCCTCTATACGATAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009664 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

305

Amino Acids

34.97

Weight (kDa)

5.66

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	4e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	7.8e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 112	8.4e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	2 cut(s)	32, 150
AclWI	GGATC	5 cut(s)	433, 494, 507, 838, 876
AcsI	RAATTY	2 cut(s)	395, 772
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	2 cut(s)	667, 682
AflII	CTTAAG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	652
AhlI	ACTAGT	1 cut(s)	668
AjnI	CCWGG	1 cut(s)	777
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	5 cut(s)	349, 515, 614, 787, 882
AluI	AGCT	5 cut(s)	349, 515, 614, 787, 882
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	5 cut(s)	433, 494, 507, 838, 876
AoxI	GGCC	3 cut(s)	44, 188, 780
ApeKI	GCWGC	4 cut(s)	18, 240, 611, 614
ApoI	RAATTY	2 cut(s)	395, 772
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	46, 205
BamHI	GGATCC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	98
BauI	CACGAG	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	5, 252, 601, 623
BccI	CCATC	4 cut(s)	22, 165, 511, 652
BceAI	ACGGC	2 cut(s)	53, 112
BciT130I	CCWGG	1 cut(s)	779
BclI	TGATCA	4 cut(s)	540, 730, 736, 849
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	711
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	4 cut(s)	19, 241, 612, 615
BlsI	GCNGC	4 cut(s)	20, 242, 613, 616
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	2 cut(s)	294, 779
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	5 cut(s)	100, 501, 561, 576, 838
BmrFI	CCNGG	2 cut(s)	294, 779
BmsI	GCATC	3 cut(s)	55, 598, 647
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	294
BsaBI	GATNNNNATC	3 cut(s)	443, 735, 848
BsaJI	CCNNGG	2 cut(s)	47, 522
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	3 cut(s)	443, 735, 848
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	2 cut(s)	47, 522
BseGI	GGATG	1 cut(s)	638
BseJI	GATNNNNATC	3 cut(s)	443, 735, 848
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	4 cut(s)	5, 252, 601, 623
BshFI	GGCC	3 cut(s)	46, 190, 782
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	102, 293
BsmAI	GTCTC	1 cut(s)	711
BsnI	GGCC	3 cut(s)	46, 190, 782
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	8 cut(s)	438, 499, 540, 730, 736, 843, 849, 868
Bsp19I	CCATGG	2 cut(s)	47, 522
BspACI	CCGC	2 cut(s)	32, 150
BspANI	GGCC	3 cut(s)	46, 190, 782
BspCNI	CTCAG	1 cut(s)	139
BspHI	TCATGA	2 cut(s)	451, 733
BspLI	GGNNCC	5 cut(s)	100, 501, 561, 576, 838
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	5 cut(s)	433, 494, 507, 838, 876
BspT107I	GGYRCC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	47, 522
BssMI	GATC	8 cut(s)	438, 499, 540, 730, 736, 843, 849, 868
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	2 cut(s)	47, 522
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	3 cut(s)	15, 718, 817
Bst6I	CTCTTC	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	2 cut(s)	47, 522
BstF5I	GGATG	1 cut(s)	638
BstKTI	GATC	8 cut(s)	441, 502, 543, 733, 739, 846, 852, 871
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	8 cut(s)	438, 499, 540, 730, 736, 843, 849, 868
BstNI	CCWGG	1 cut(s)	779
BstSCI	CCNGG	2 cut(s)	292, 777
BstV1I	GCAGC	4 cut(s)	5, 252, 601, 623
BstX2I	RGATCY	3 cut(s)	438, 499, 843
BstXI	CCANNNNNNTGG	1 cut(s)	570
BstYI	RGATCY	3 cut(s)	438, 499, 843
BsuRI	GGCC	3 cut(s)	46, 190, 782
BtgI	CCRYGG	2 cut(s)	47, 522
BtsCI	GGATG	1 cut(s)	638
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	359
CciI	TCATGA	2 cut(s)	451, 733
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	666, 681
CviAII	CATG	8 cut(s)	48, 203, 452, 523, 538, 635, 658, 734
CviQI	GTAC	2 cut(s)	666, 681
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	8 cut(s)	440, 501, 542, 732, 738, 845, 851, 870
DpnII	GATC	8 cut(s)	438, 499, 540, 730, 736, 843, 849, 868
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	47, 522
Eco147I	AGGCCT	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	777
EcoT14I	CCWWGG	2 cut(s)	47, 522
EcoT22I	ATGCAT	1 cut(s)	640
ErhI	CCWWGG	2 cut(s)	47, 522
FaeI	CATG	8 cut(s)	51, 206, 455, 526, 541, 638, 661, 737
FatI	CATG	8 cut(s)	47, 202, 451, 522, 537, 634, 657, 733
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	4 cut(s)	540, 730, 736, 849
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	4 cut(s)	19, 241, 612, 615
FokI	GGATG	1 cut(s)	625
Fsp4HI	GCNGC	4 cut(s)	19, 241, 612, 615
FspBI	CTAG	1 cut(s)	669
GluI	GCNGC	4 cut(s)	19, 241, 612, 615
HaeIII	GGCC	3 cut(s)	46, 190, 782
HapII	CCGG	2 cut(s)	102, 293
Hin1II	CATG	8 cut(s)	51, 206, 455, 526, 541, 638, 661, 737
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	427, 547
HpaII	CCGG	2 cut(s)	102, 293
HphI	GGTGA	2 cut(s)	46, 205
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	3 cut(s)	129, 432, 552
Hpy188III	TCNNGA	5 cut(s)	452, 544, 734, 847, 872
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	361, 895
HpyCH4III	ACNGT	3 cut(s)	15, 718, 817
HpyCH4V	TGCA	3 cut(s)	240, 611, 638
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	8 cut(s)	51, 206, 455, 526, 541, 638, 661, 737
Ksp22I	TGATCA	4 cut(s)	540, 730, 736, 849
Kzo9I	GATC	8 cut(s)	438, 499, 540, 730, 736, 843, 849, 868
LmnI	GCTCC	1 cut(s)	887
LpnPI	CCDG	9 cut(s)	97, 115, 250, 306, 449, 756, 764, 791, 860
Lsp1109I	GCAGC	4 cut(s)	5, 252, 601, 623
LweI	GCATC	3 cut(s)	55, 598, 647
MaeI	CTAG	1 cut(s)	669
MalI	GATC	8 cut(s)	440, 501, 542, 732, 738, 845, 851, 870
MboI	GATC	8 cut(s)	438, 499, 540, 730, 736, 843, 849, 868
MflI	RGATCY	3 cut(s)	438, 499, 843
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	6 cut(s)	132, 178, 287, 395, 688, 772
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	8 cut(s)	52, 131, 135, 138, 180, 200, 327, 909
Mph1103I	ATGCAT	1 cut(s)	640
MseI	TTAA	4 cut(s)	75, 177, 197, 387
MslI	CAYNNNNRTG	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	614
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	2 cut(s)	102, 293
MspR9I	CCNGG	2 cut(s)	294, 779
MvaI	CCWGG	1 cut(s)	779
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	2 cut(s)	47, 522
NdeII	GATC	8 cut(s)	438, 499, 540, 730, 736, 843, 849, 868
NlaIII	CATG	8 cut(s)	51, 206, 455, 526, 541, 638, 661, 737
NlaIV	GGNNCC	5 cut(s)	100, 501, 561, 576, 838
NmeAIII	GCCGAG	1 cut(s)	808
NsiI	ATGCAT	1 cut(s)	640
PagI	TCATGA	2 cut(s)	451, 733
PaqCI	CACCTGC	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	20, 242, 613, 616
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	777
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	5 cut(s)	100, 501, 561, 576, 838
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	3 cut(s)	438, 499, 843
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	2 cut(s)	667, 682
RsaNI	GTAC	2 cut(s)	666, 681
RseI	CAYNNNNRTG	1 cut(s)	633
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	4 cut(s)	75, 177, 197, 387
SatI	GCNGC	4 cut(s)	19, 241, 612, 615
Sau3AI	GATC	8 cut(s)	438, 499, 540, 730, 736, 843, 849, 868
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	2 cut(s)	294, 779
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	8 cut(s)	149, 269, 351, 517, 588, 616, 789, 884
SfaNI	GCATC	3 cut(s)	55, 598, 647
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	2 cut(s)	74, 184
SmoI	CTYRAG	2 cut(s)	74, 184
SpeI	ACTAGT	1 cut(s)	668
Sse9I	AATT	6 cut(s)	132, 178, 287, 395, 688, 772
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	2 cut(s)	32, 150
SspMI	CTAG	1 cut(s)	669
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	2 cut(s)	292, 777
StyI	CCWWGG	2 cut(s)	47, 522
TaaI	ACNGT	3 cut(s)	15, 718, 817
TaqI	TCGA	4 cut(s)	53, 87, 425, 470
TasI	AATT	6 cut(s)	132, 178, 287, 395, 688, 772
TatI	WGTACW	1 cut(s)	665
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	4 cut(s)	75, 177, 197, 387
Tru9I	TTAA	4 cut(s)	75, 177, 197, 387
TseI	GCWGC	4 cut(s)	18, 240, 611, 614
TspDTI	ATGAA	6 cut(s)	234, 365, 440, 609, 681, 877
TspGWI	ACGGA	2 cut(s)	71, 849
Vha464I	CTTAAG	1 cut(s)	74
XapI	RAATTY	2 cut(s)	395, 772
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	1 cut(s)	669
ZrmI	AGTACT	1 cut(s)	667
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.