Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Reverse (-)

36150286 .. 36152252

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G416400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGACGCACTCCGTGTTGTGACAAAGATAATGTGAAGAGAGGTCCATGGTCACCTGATGAAGACGCAACTCTCAAGAGCTACCTTGAGACTCATGGAACTGGTGGAAATTGGATCCTTTTGCCCAAAAAAGCTGGTCTTAGGAGATGTGGGAAGAGTTGCCGTTTACGTTGGCTCAATTATCTGAGGCCAGACATCAAACATGGATGCTTCACTGAAGAGGAAGACAGCATTATATGTAGCCTCTACAACCAAATGGGGAGCCGATGGTCAGTGATAGCTTCTCAGATGTCTGGAAGAACAGATAATGATGTGAAGAACTATTGGAACACCAAATTAAAGAAGAAGCTATTTGGGGGAAAACAAAACCTCACAACAAAGAACAGCAAAGAGCCCACTAACAATGCCACTCTTCCTGGCTCTGCAGCCTCACTGGCCCTGCCTTGTGTCCCAAAAGCTGAACCCCAAGACTCTGCCTTTTCAACATTCCAAACCCAAATTCCACCCACATTGCACATGTTAACTGATGTTAATTCTGGACTGAATGCCTATAACCAAACCTGGACTTTAAACTCACCAGATCAATTATACAGCTCCAAGGTCATGGCTTTTTCAGATTTTGGTGCAAGTTCAAAGAAAAGTTACACTACTGTTTCATTATCTCAGGATGGCTCAAACATTTCAGACTCTTCTTCAATAGCTGCTGTTGACAAGTGTGCCTCACTACCTGGAAATGGTTCCCTTGATGATTCTGGGTTGTTTACAGATTTCGGTCTGCCTTATGATGTGAATTATGGCATGTGCTTTGGAGAAAAAACCAGTGAATTTGGCCCAGCTAGCTGTACAAATTTTGGTGATTTATTTTCAAGCTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

293

Amino Acids

31.89

Weight (kDa)

7.46

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	109, 122
AcsI	RAATTY	3 cut(s)	498, 824, 847
AcuI	CTGAAG	1 cut(s)	237
AdeI	CACNNNGTG	1 cut(s)	15
AfaI	GTAC	1 cut(s)	844
AfiI	CCNNNNNNNGG	1 cut(s)	734
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	4 cut(s)	483, 633, 696, 867
AjnI	CCWGG	3 cut(s)	415, 560, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	109, 122
AoxI	GGCC	3 cut(s)	188, 435, 829
ApeKI	GCWGC	2 cut(s)	425, 701
ApoI	RAATTY	3 cut(s)	498, 824, 847
Asp700I	GAANNNNTTC	1 cut(s)	736
AspS9I	GGNCC	3 cut(s)	44, 436, 830
AsuHPI	GGTGA	3 cut(s)	45, 567, 866
AsuNHI	GCTAGC	1 cut(s)	836
AvaII	GGWCC	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	69, 231
BbvI	GCAGC	2 cut(s)	437, 688
BccI	CCATC	2 cut(s)	261, 662
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	3 cut(s)	417, 562, 729
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	837
BfmI	CTRYAG	1 cut(s)	423
BglI	GCCNNNNNGGC	1 cut(s)	434
BisI	GCNGC	2 cut(s)	426, 702
BlsI	GCNGC	2 cut(s)	427, 703
Bme1390I	CCNGG	3 cut(s)	417, 562, 729
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	44, 436, 830
BmiI	GGNNCC	3 cut(s)	116, 263, 739
BmrFI	CCNGG	3 cut(s)	417, 562, 729
BmsI	GCATC	1 cut(s)	197
BmtI	GCTAGC	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	69, 231
BpuEI	CTTGAG	2 cut(s)	59, 107
BsaJI	CCNNGG	2 cut(s)	47, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse1I	ACTGG	3 cut(s)	106, 438, 819
Bse3DI	GCAATG	1 cut(s)	509
BseBI	CCWGG	3 cut(s)	417, 562, 729
BseDI	CCNNGG	2 cut(s)	47, 597
BseGI	GGATG	2 cut(s)	212, 673
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	3 cut(s)	176, 299, 677
BseNI	ACTGG	3 cut(s)	106, 438, 819
BseXI	GCAGC	2 cut(s)	437, 688
BseYI	CCCAGC	1 cut(s)	832
BshFI	GGCC	3 cut(s)	190, 437, 831
BslFI	GGGAC	2 cut(s)	18, 434
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	18, 434
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	3 cut(s)	190, 437, 831
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp1407I	TGTACA	1 cut(s)	842
Bsp143I	GATC	2 cut(s)	114, 580
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	3 cut(s)	190, 437, 831
BspCNI	CTCAG	3 cut(s)	177, 298, 676
BspLI	GGNNCC	3 cut(s)	116, 263, 739
BspMAI	CTGCAG	1 cut(s)	427
BspOI	GCTAGC	1 cut(s)	840
BspPI	GGATC	2 cut(s)	109, 122
BsrDI	GCAATG	1 cut(s)	509
BsrGI	TGTACA	1 cut(s)	842
BsrI	ACTGG	3 cut(s)	106, 438, 819
BssECI	CCNNGG	2 cut(s)	47, 597
BssMI	GATC	2 cut(s)	114, 580
BssT1I	CCWWGG	2 cut(s)	47, 597
Bst2UI	CCWGG	3 cut(s)	417, 562, 729
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	5 cut(s)	32, 149, 213, 417, 694
BstAUI	TGTACA	1 cut(s)	842
BstC8I	GCNNGC	1 cut(s)	838
BstDEI	CTNAG	4 cut(s)	140, 185, 285, 663
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	212, 673
BstKTI	GATC	2 cut(s)	117, 583
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	114, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 837
BstNI	CCWGG	3 cut(s)	417, 562, 729
BstNSI	RCATGY	2 cut(s)	520, 802
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	415, 560, 727
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	437, 688
BstV2I	GAAGAC	2 cut(s)	69, 231
BstX2I	RGATCY	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	190, 437, 831
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	212, 673
BtsIMutI	CAGTG	4 cut(s)	213, 279, 431, 826
Cac8I	GCNNGC	1 cut(s)	838
Cfr13I	GGNCC	3 cut(s)	44, 436, 830
CseI	GACGC	2 cut(s)	15, 74
Csp6I	GTAC	1 cut(s)	843
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	6 cut(s)	48, 95, 203, 517, 604, 799
CviQI	GTAC	1 cut(s)	843
DdeI	CTNAG	4 cut(s)	140, 185, 285, 663
DpnI	GATC	2 cut(s)	116, 582
DpnII	GATC	2 cut(s)	114, 580
DraI	TTTAAA	1 cut(s)	570
DraIII	CACNNNGTG	1 cut(s)	15
Eam1104I	CTCTTC	5 cut(s)	32, 149, 213, 417, 694
EarI	CTCTTC	5 cut(s)	32, 149, 213, 417, 694
Eco130I	CCWWGG	2 cut(s)	47, 597
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	3 cut(s)	415, 560, 727
EcoT14I	CCWWGG	2 cut(s)	47, 597
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	2 cut(s)	47, 597
FaeI	CATG	6 cut(s)	51, 98, 206, 520, 607, 802
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	2 cut(s)	18, 434
FatI	CATG	6 cut(s)	47, 94, 202, 516, 603, 798
Fnu4HI	GCNGC	2 cut(s)	426, 702
FokI	GGATG	2 cut(s)	219, 680
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	2 cut(s)	426, 702
FspBI	CTAG	1 cut(s)	837
GluI	GCNGC	2 cut(s)	426, 702
GsaI	CCCAGC	1 cut(s)	836
HaeIII	GGCC	3 cut(s)	190, 437, 831
HgaI	GACGC	2 cut(s)	15, 74
Hin1II	CATG	6 cut(s)	51, 98, 206, 520, 607, 802
HincII	GTYRAC	2 cut(s)	522, 709
HindII	GTYRAC	2 cut(s)	522, 709
HinfI	GANTC	4 cut(s)	91, 470, 686, 749
HpaI	GTTAAC	1 cut(s)	522
HphI	GGTGA	3 cut(s)	45, 567, 866
Hpy166II	GTNNAC	4 cut(s)	167, 522, 709, 762
Hpy188I	TCNGA	4 cut(s)	186, 288, 616, 685
Hpy188III	TCNNGA	4 cut(s)	76, 294, 537, 665
Hpy8I	GTNNAC	4 cut(s)	167, 522, 709, 762
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	3 cut(s)	425, 514, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 837
HpyF3I	CTNAG	4 cut(s)	140, 185, 285, 663
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	6 cut(s)	51, 98, 206, 520, 607, 802
KspAI	GTTAAC	1 cut(s)	522
Kzo9I	GATC	2 cut(s)	114, 580
LmnI	GCTCC	2 cut(s)	261, 599
Lsp1109I	GCAGC	2 cut(s)	437, 688
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	837
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	3 cut(s)	20, 51, 641
MalI	GATC	2 cut(s)	116, 582
MboI	GATC	2 cut(s)	114, 580
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	9 cut(s)	109, 178, 335, 498, 532, 584, 790, 824, 847
MlyI	GAGTC	3 cut(s)	85, 464, 680
MnlI	CCTC	7 cut(s)	35, 180, 214, 254, 380, 439, 730
MroXI	GAANNNNTTC	1 cut(s)	736
MseI	TTAA	4 cut(s)	338, 521, 531, 569
MspR9I	CCNGG	3 cut(s)	417, 562, 729
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	3 cut(s)	417, 562, 729
MwoI	GCNNNNNNNGC	2 cut(s)	434, 837
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	114, 580
NheI	GCTAGC	1 cut(s)	836
NlaIII	CATG	6 cut(s)	51, 98, 206, 520, 607, 802
NlaIV	GGNNCC	3 cut(s)	116, 263, 739
NmuCI	GTSAC	2 cut(s)	20, 51
NspI	RCATGY	2 cut(s)	520, 802
PciI	ACATGT	1 cut(s)	516
PctI	GAATGC	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	736
PfeI	GAWTC	1 cut(s)	749
PkrI	GCNGC	2 cut(s)	427, 703
PleI	GAGTC	3 cut(s)	85, 464, 680
PpsI	GAGTC	3 cut(s)	85, 464, 680
PscI	ACATGT	1 cut(s)	516
Psp6I	CCWGG	3 cut(s)	415, 560, 727
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	832
PspGI	CCWGG	3 cut(s)	415, 560, 727
PspN4I	GGNNCC	3 cut(s)	116, 263, 739
PspPI	GGNCC	3 cut(s)	44, 436, 830
PstI	CTGCAG	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	1 cut(s)	844
RsaNI	GTAC	1 cut(s)	843
SaqAI	TTAA	4 cut(s)	338, 521, 531, 569
SatI	GCNGC	2 cut(s)	426, 702
Sau3AI	GATC	2 cut(s)	114, 580
Sau96I	GGNCC	3 cut(s)	44, 436, 830
SchI	GAGTC	3 cut(s)	85, 464, 680
ScrFI	CCNGG	3 cut(s)	417, 562, 729
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	74, 86
SmoI	CTYRAG	2 cut(s)	74, 86
Sse9I	AATT	9 cut(s)	109, 178, 335, 498, 532, 584, 790, 824, 847
SspMI	CTAG	1 cut(s)	837
StyD4I	CCNGG	3 cut(s)	415, 560, 727
StyI	CCWWGG	2 cut(s)	47, 597
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	1 cut(s)	172
TaqII	GACCGA	1 cut(s)	761
TasI	AATT	9 cut(s)	109, 178, 335, 498, 532, 584, 790, 824, 847
TatI	WGTACW	1 cut(s)	842
TfiI	GAWTC	1 cut(s)	749
Tru1I	TTAA	4 cut(s)	338, 521, 531, 569
Tru9I	TTAA	4 cut(s)	338, 521, 531, 569
TscAI	CASTG	4 cut(s)	220, 279, 438, 826
TseFI	GTSAC	2 cut(s)	20, 51
TseI	GCWGC	2 cut(s)	425, 701
Tsp45I	GTSAC	2 cut(s)	20, 51
TspDTI	ATGAA	2 cut(s)	75, 645
TspRI	CASTG	4 cut(s)	220, 279, 438, 826
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	3 cut(s)	498, 824, 847
XceI	RCATGY	2 cut(s)	520, 802
XmnI	GAANNNNTTC	1 cut(s)	736
XspI	CTAG	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.