Prupe.7G216000_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0002896
Physical Location & Seq
Reverse (-)
19533658 .. 19535476
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G216000.1

Sequence Viewer

Length: 789 bp
ATGGGAAGAGCTCCATGCTGTGACAAATCTAAAGTGAAAAGAGGACCGTGGTCCCCCGAAGAAGACACCACCCTCAAGAACTACCTCCACAACCATGGCACTGGTGGCAATTGGATTTCGCTCCCTACCAAAGCAGGCCTCAACCGTTGTGGTAAGAGTTGTCGATTGAGATGGCTGAATTATCTTAGGCCAGACATCAAGCGTGGAGGTTTTACTGAGGAGGAAGACAACCTTATTTGCACTCTCTACGGTACCATTGGAAGTAGGTGGTCTGTTATAGCATCCCAACTGCCAGGAAGAACAGACAATGATGTCAAAAACTATTGGAACACCAAGTTGAAGAAAAAATTCTTCGCAGCATATAACATGAATTTGGCTTCAAGAGAGTTTCCGGCTTCAGTTCCCAAATTTGAATCTGGAACCCCTCAGGATCATGGGACTTCATCATCTTGTTTTGATGGTACATTGCCATATCTAATGGACGTGAGCTTGGGGCAGAGTTTTGATCAACAAAAGCAAATAAGTCAATTTTCTCATTCAAATTTTCTGGAAGTTAATGATTTTGGCACTTGTGGAAGTAAGAGTTTCACCAATATTTCATCATCTCAAGAAGCTTCAAGTCTTCCCACTTCATCTATTTTGGGTTTGGAGAACAATTACACCCTGTGGTCTGGCGATGAAAGTGGGGCTCTTACGGACTATGGATTTGAGCCTCCTGCTGATGCTCTTCTGGCAGGCTATAAACTCAAGATGCCAAGGCAAAGCCTCTCTATCAAGTTCACAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

263

Amino Acids

29.08

Weight (kDa)

8.4

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 251
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 4 cut(s) 347, 370, 407, 541
AcuI CTGAAG 1 cut(s) 381
AdeI CACNNNGTG 1 cut(s) 666
AfaI GTAC 2 cut(s) 253, 463
AgsI TTSAA 5 cut(s) 340, 381, 413, 540, 618
AjiI CACGTC 1 cut(s) 484
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 3 cut(s) 11, 489, 614
AluI AGCT 3 cut(s) 11, 489, 614
Alw21I GWGCWC 1 cut(s) 13
AlwI GGATC 1 cut(s) 438
AoxI GGCC 2 cut(s) 136, 188
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 4 cut(s) 347, 370, 407, 541
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
Asp700I GAANNNNTTC 1 cut(s) 347
Asp718I GGTACC 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 44, 51
AsuHPI GGTGA 1 cut(s) 580
AvaII GGWCC 2 cut(s) 44, 51
AxyI CCTNAGG 1 cut(s) 426
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 2 cut(s) 13, 691
BbsI GAAGAC 3 cut(s) 69, 231, 614
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 165, 452
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 505
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 2 cut(s) 44, 51
BmgBI CACGTC 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 44, 51
BmiI GGNNCC 3 cut(s) 53, 253, 421
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 3 cut(s) 290, 712, 741
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 3 cut(s) 69, 231, 614
BpuEI CTTGAG 3 cut(s) 59, 591, 731
BsaJI CCNNGG 3 cut(s) 47, 94, 755
Bse1I ACTGG 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 464
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 47, 94, 755
BseGI GGATG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 464
BseMII CTCAG 2 cut(s) 207, 440
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 368
BshFI GGCC 2 cut(s) 138, 190
BshNI GGYRCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 392
BslFI GGGAC 2 cut(s) 37, 451
BsmFI GGGAC 2 cut(s) 37, 451
BsnI GGCC 2 cut(s) 138, 190
Bsp1286I GDGCHC 2 cut(s) 13, 691
Bsp143I GATC 2 cut(s) 430, 505
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 2 cut(s) 138, 190
BspCNI CTCAG 2 cut(s) 208, 439
BspLI GGNNCC 3 cut(s) 53, 253, 421
BspPI GGATC 1 cut(s) 438
BspQI GCTCTTC 1 cut(s) 732
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 464
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 47, 94, 755
BssMI GATC 2 cut(s) 430, 505
BssT1I CCWWGG 2 cut(s) 94, 755
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 48, 146, 251
Bst6I CTCTTC 1 cut(s) 732
BstC8I GCNNGC 2 cut(s) 136, 736
BstDEI CTNAG 3 cut(s) 185, 216, 426
BstDSI CCRYGG 2 cut(s) 47, 94
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 2 cut(s) 433, 508
BstMBI GATC 2 cut(s) 430, 505
BstMWI GCNNNNNNNGC 2 cut(s) 105, 731
BstNI CCWGG 1 cut(s) 294
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 368
BstV2I GAAGAC 3 cut(s) 69, 231, 614
BstXI CCANNNNNNTGG 2 cut(s) 95, 101
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 2 cut(s) 138, 190
BtgI CCRYGG 2 cut(s) 47, 94
BtgZI GCGATG 1 cut(s) 690
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 136, 736
Cfr13I GGNCC 2 cut(s) 44, 51
Csp6I GTAC 2 cut(s) 252, 462
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 4 cut(s) 15, 95, 367, 434
CviQI GTAC 2 cut(s) 252, 462
DdeI CTNAG 3 cut(s) 185, 216, 426
DpnI GATC 2 cut(s) 432, 507
DpnII GATC 2 cut(s) 430, 505
DraIII CACNNNGTG 1 cut(s) 666
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 94, 755
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 2 cut(s) 13, 691
Eco47I GGWCC 2 cut(s) 44, 51
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 381
Eco81I CCTNAGG 1 cut(s) 426
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 2 cut(s) 94, 755
EcoT38I GRGCYC 2 cut(s) 13, 691
ErhI CCWWGG 2 cut(s) 94, 755
FaeI CATG 4 cut(s) 18, 98, 370, 437
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 2 cut(s) 37, 451
FatI CATG 4 cut(s) 14, 94, 366, 433
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 1 cut(s) 268
FriOI GRGCYC 2 cut(s) 13, 691
Fsp4HI GCNGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 2 cut(s) 138, 190
HapII CCGG 1 cut(s) 392
Hin1II CATG 4 cut(s) 18, 98, 370, 437
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 1 cut(s) 413
HpaII CCGG 1 cut(s) 392
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 1 cut(s) 780
Hpy188III TCNNGA 7 cut(s) 76, 381, 417, 428, 548, 608, 748
Hpy8I GTNNAC 1 cut(s) 780
HpyCH4III ACNGT 3 cut(s) 48, 146, 251
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 731
HpyF3I CTNAG 3 cut(s) 185, 216, 426
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 4 cut(s) 18, 98, 370, 437
KpnI GGTACC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 2 cut(s) 430, 505
LguI GCTCTTC 1 cut(s) 732
LmnI GCTCC 2 cut(s) 16, 126
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 3 cut(s) 290, 712, 741
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 432, 507
MboI GATC 2 cut(s) 430, 505
MboII GAAGA 9 cut(s) 18, 71, 74, 236, 309, 343, 352, 614, 719
MfeI CAATTG 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 13, 691
MluCI AATT 8 cut(s) 109, 178, 347, 370, 407, 527, 541, 655
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 1 cut(s) 555
MslI CAYNNNNRTG 1 cut(s) 93
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 1 cut(s) 294
MunI CAATTG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 105, 731
NcoI CCATGG 1 cut(s) 94
NdeII GATC 2 cut(s) 430, 505
NlaIII CATG 4 cut(s) 18, 98, 370, 437
NlaIV GGNNCC 3 cut(s) 53, 253, 421
NmuCI GTSAC 1 cut(s) 20
PceI AGGCCT 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 732
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 1 cut(s) 358
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 3 cut(s) 53, 253, 421
PspPI GGNCC 2 cut(s) 44, 51
RsaI GTAC 2 cut(s) 253, 463
RsaNI GTAC 2 cut(s) 252, 462
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 732
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 2 cut(s) 430, 505
Sau96I GGNCC 2 cut(s) 44, 51
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 2 cut(s) 13, 691
SetI ASST 8 cut(s) 13, 87, 211, 234, 269, 486, 491, 616
SfaNI GCATC 3 cut(s) 290, 712, 741
SinI GGWCC 2 cut(s) 44, 51
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 3 cut(s) 74, 606, 746
SmoI CTYRAG 3 cut(s) 74, 606, 746
Sse9I AATT 8 cut(s) 109, 178, 347, 370, 407, 527, 541, 655
SseBI AGGCCT 1 cut(s) 138
SspI AATATT 1 cut(s) 595
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 2 cut(s) 94, 755
TaaI ACNGT 3 cut(s) 48, 146, 251
TaiI ACGT 1 cut(s) 486
TaqI TCGA 1 cut(s) 163
TasI AATT 8 cut(s) 109, 178, 347, 370, 407, 527, 541, 655
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 383, 432, 588, 621, 693
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 44, 51
XapI RAATTY 4 cut(s) 347, 370, 407, 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.