Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Reverse (-)

24539143 .. 24540566

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGAAGAGCTCCATGTTGTGACAAAGCTAATGTCAAGAAAGGCCAATGGTCTCCTGAGGAAGATGAAGCTCTCAAGACTTACCTTGAGACTCATGGAAGTGGTGGCAATTGGATTCATCTGCCTCAAAAAGCTGGGCTTAGGAGATGTGGGAAGAGCTGCCGTCTGCGGTGGTTGAATTATCTGAGGCCAGACATCAAACACGGACACTTCACTGAAGAGGAGGACAACATTATTTGTAACCTCTACACCCAAATGGGAAGCCGATGGTCATACATAGCTGCTCAAATGCCTGGAAGAACAGACAATGATGTGAAGAACTATTGGAACACCAAACTGAAGAAGAAGTACTTTCTGCCTGCAAAACCAAGTCTTACAGCAAAAGAGAGCAAAAACCCAAACGCCTCCCCACTCACACTGCCTTGTGCTCCAAAACTTGAAACCAGTGATGAGTTTCAGACACAAATTCATCCCACATTGATGGTATCTGATTCTAATTCTGGATTGGATGCCTATGATCAGTGCTTAAGCTTGAACCCAAATCCATTGTACAACTCCCAGCTCATGGGTTTTTCACAATTTGGTGCAACTTCTGTTTCAATGTCTCAAGATGGTTCGAGTGTTTCAGATTCTTCTTCAATTGCTGCAGTTGACAATGGTTTACTACATGGAAATAACTTTATAAATGAGGATGCTGCTGGGATATCAATGGATTTTGGATTTGGAGGATTGCCTTATGATGTTGTCAATCAGATGTGGTTTGGAGAAAAAGCCAGTGAAGTTGTTCACCCAACTTGCTCCACAAGTTTAGATGCTGATTTCTTTTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

278

Amino Acids

30.67

Weight (kDa)

5.64

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	1.6e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	2.9e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 116	3.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	683
AccB7I	CCANNNNNTGG	1 cut(s)	565
AciI	CCGC	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	2 cut(s)	237, 359
AfaI	GTAC	2 cut(s)	350, 551
AfiI	CCNNNNNNNGG	1 cut(s)	565
AflII	CTTAAG	1 cut(s)	526
AgsI	TTSAA	5 cut(s)	178, 440, 535, 600, 639
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	8 cut(s)	11, 29, 71, 134, 159, 281, 531, 562
AluI	AGCT	8 cut(s)	11, 29, 71, 134, 159, 281, 531, 562
Alw21I	GWGCWC	2 cut(s)	13, 430
Alw26I	GTCTC	3 cut(s)	57, 83, 609
AoxI	GGCC	2 cut(s)	43, 188
ApeKI	GCWGC	4 cut(s)	159, 281, 644, 695
ApoI	RAATTY	1 cut(s)	465
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
Asp700I	GAANNNNTTC	1 cut(s)	783
AsuHPI	GGTGA	1 cut(s)	779
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
Bbv12I	GWGCWC	2 cut(s)	13, 430
BbvI	GCAGC	4 cut(s)	146, 268, 631, 682
BccI	CCATC	3 cut(s)	261, 475, 605
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	3 cut(s)	57, 83, 609
BfmI	CTRYAG	1 cut(s)	645
BfrI	CTTAAG	1 cut(s)	526
BisI	GCNGC	4 cut(s)	160, 282, 645, 696
BlsI	GCNGC	4 cut(s)	161, 283, 646, 697
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	3 cut(s)	499, 682, 802
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	3 cut(s)	59, 107, 591
BsaI	GGTCTC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse1I	ACTGG	2 cut(s)	444, 774
Bse21I	CCTNAGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	3 cut(s)	469, 514, 697
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseMII	CTCAG	2 cut(s)	48, 176
BseNI	ACTGG	2 cut(s)	444, 774
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	4 cut(s)	146, 268, 631, 682
BseYI	CCCAGC	3 cut(s)	134, 558, 698
BshFI	GGCC	2 cut(s)	45, 190
BsiHKAI	GWGCWC	2 cut(s)	13, 430
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmAI	GTCTC	3 cut(s)	57, 83, 609
BsnI	GGCC	2 cut(s)	45, 190
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	13, 430
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	45, 190
BspCNI	CTCAG	2 cut(s)	49, 177
BspMAI	CTGCAG	1 cut(s)	649
BspQI	GCTCTTC	1 cut(s)	149
BspTI	CTTAAG	1 cut(s)	526
BspTNI	GGTCTC	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	444, 774
BssMI	GATC	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	294
Bst6I	CTCTTC	2 cut(s)	149, 213
BstAFI	CTTAAG	1 cut(s)	526
BstAUI	TGTACA	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	57, 140, 185
BstF5I	GGATG	3 cut(s)	469, 514, 697
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	3 cut(s)	57, 83, 609
BstMBI	GATC	1 cut(s)	517
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	4 cut(s)	146, 268, 631, 682
BstXI	CCANNNNNNTGG	1 cut(s)	481
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	45, 190
BtsCI	GGATG	3 cut(s)	469, 514, 697
BtsI	GCAGTG	1 cut(s)	416
BtsIMutI	CAGTG	5 cut(s)	213, 416, 451, 527, 781
Cac8I	GCNNGC	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	349, 550
CviAII	CATG	4 cut(s)	15, 95, 565, 668
CviQI	GTAC	2 cut(s)	349, 550
DdeI	CTNAG	3 cut(s)	57, 140, 185
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	149, 213
EarI	CTCTTC	2 cut(s)	149, 213
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	705
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	237, 359
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	705
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	4 cut(s)	18, 98, 568, 671
FaiI	YATR	9 cut(s)	16, 96, 274, 278, 516, 566, 669, 683, 738
FalI	AAGNNNNNCTT	4 cut(s)	123, 155, 335, 367
FatI	CATG	4 cut(s)	14, 94, 564, 667
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	4 cut(s)	160, 282, 645, 696
FokI	GGATG	3 cut(s)	456, 521, 704
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	4 cut(s)	160, 282, 645, 696
GluI	GCNGC	4 cut(s)	160, 282, 645, 696
GsaI	CCCAGC	3 cut(s)	138, 562, 702
HaeIII	GGCC	2 cut(s)	45, 190
Hin1II	CATG	4 cut(s)	18, 98, 568, 671
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	4 cut(s)	91, 115, 491, 629
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	3 cut(s)	652, 662, 787
Hpy188I	TCNGA	5 cut(s)	186, 459, 490, 628, 753
Hpy188III	TCNNGA	5 cut(s)	37, 56, 76, 501, 608
Hpy8I	GTNNAC	3 cut(s)	652, 662, 787
HpyCH4V	TGCA	3 cut(s)	362, 587, 647
HpyF3I	CTNAG	3 cut(s)	57, 140, 185
Hsp92II	CATG	4 cut(s)	18, 98, 568, 671
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	1 cut(s)	517
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	3 cut(s)	16, 433, 803
Lsp1109I	GCAGC	4 cut(s)	146, 268, 631, 682
LweI	GCATC	3 cut(s)	499, 682, 802
MaeIII	GTNAC	2 cut(s)	20, 239
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MfeI	CAATTG	2 cut(s)	109, 639
MhlI	GDGCHC	2 cut(s)	13, 430
MluCI	AATT	6 cut(s)	109, 178, 465, 496, 578, 639
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	9 cut(s)	52, 135, 180, 214, 217, 254, 415, 682, 719
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	1 cut(s)	527
MslI	CAYNNNNRTG	3 cut(s)	99, 254, 479
MspCI	CTTAAG	1 cut(s)	526
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	2 cut(s)	109, 639
MvaI	CCWGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	517
NlaIII	CATG	4 cut(s)	18, 98, 568, 671
NmuCI	GTSAC	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	3 cut(s)	115, 491, 629
PflMI	CCANNNNNTGG	1 cut(s)	565
PkrI	GCNGC	4 cut(s)	161, 283, 646, 697
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	3 cut(s)	134, 558, 698
PspGI	CCWGG	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	649
RsaI	GTAC	2 cut(s)	350, 551
RsaNI	GTAC	2 cut(s)	349, 550
RseI	CAYNNNNRTG	3 cut(s)	99, 254, 479
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	527
SatI	GCNGC	4 cut(s)	160, 282, 645, 696
Sau3AI	GATC	1 cut(s)	517
ScaI	AGTACT	1 cut(s)	350
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	2 cut(s)	13, 430
SfaNI	GCATC	3 cut(s)	499, 682, 802
SfcI	CTRYAG	1 cut(s)	645
SmiMI	CAYNNNNRTG	3 cut(s)	99, 254, 479
SmlI	CTYRAG	4 cut(s)	74, 86, 526, 606
SmoI	CTYRAG	4 cut(s)	74, 86, 526, 606
Sse9I	AATT	6 cut(s)	109, 178, 465, 496, 578, 639
SsiI	CCGC	1 cut(s)	169
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	292
TaqI	TCGA	1 cut(s)	617
TasI	AATT	6 cut(s)	109, 178, 465, 496, 578, 639
TatI	WGTACW	2 cut(s)	348, 549
TfiI	GAWTC	3 cut(s)	115, 491, 629
Tru1I	TTAA	1 cut(s)	527
Tru9I	TTAA	1 cut(s)	527
TscAI	CASTG	5 cut(s)	220, 423, 451, 527, 781
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	159, 281, 644, 695
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	81, 107, 458
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	5 cut(s)	220, 423, 451, 527, 781
Van91I	CCANNNNNTGG	1 cut(s)	565
Vha464I	CTTAAG	1 cut(s)	526
XapI	RAATTY	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	783
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.