Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Reverse (-)

4729234 .. 4730344

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGACGCACTCCATGCTGTGACAAAGAGAACGTGAAGAGAGGTCCGTGGTCTCCGGAAGAAGACGCAGCTCTCAAGTCCTACCTCCAGTCTCATGGCAGTGATGGCACCGCCAGCAATTGGATTCATCTCCCCAAAAAAGCTGGCCTGAGGCGGTGCGGGAAGAGCTGCCGTCTGCGGTGGCTGAACTATCTGAGGCCAGACATCAAACACGGTGGCTTCACTGAGGAGGAGGACAGCATTATCTGCAACCTCTACAACCAGATGGGAAGCCGATGGTCAGTCATTGCTTCTTACATGCCTGGAAGAACAGACAATGATGTGAAGAACTACTGGAACACCAAATTAAAGAAGAAGCTTTTGGGAGGAAAGATAAAGAATATCAGCAGCAGAGAGCCCACAGTTGCAAACAATGCCAATTTTTCTGGAATCCCAGAAGCCGAGAAACCCCAAGACTCTACCTTTTGGACTTCCCAAACCCAAGTTCCATCCACATTGCAGATGCTATATGATGTGAATTCTGGACTGAGTGCAGATAACCAGACCATGAGCTTAAACCCTGATCAGTTATACAACCCCAAGCTGTCGGGTTTTTCGGATTTCGGTGCAAGGTCAAGGGGGAGTTACAGCACTACTGTTTCATTGTCTCAGGAGGGATCAAGCGTTTCGGATTCATCTTCCATAGCTGGGAATCGTTATCTTGATCAGGATTATGGGTTTTTGATGGATTATGGATTTGGTGTGGCTTATGATAATAATGTCAACCATTATGGCATGTGTTTTGGAGACAAAACCAGTGAAGTTGGTCCAACTGGATGCACAGATTTTGGTGATTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

281

Amino Acids

31.08

Weight (kDa)

6.43

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	4 cut(s)	111, 154, 159, 178
AclWI	GGATC	1 cut(s)	664
AcsI	RAATTY	1 cut(s)	517
AfiI	CCNNNNNNNGG	2 cut(s)	120, 687
AjnI	CCWGG	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	4 cut(s)	344, 376, 468, 500
AluBI	AGCT	7 cut(s)	71, 143, 168, 358, 552, 583, 686
AluI	AGCT	7 cut(s)	71, 143, 168, 358, 552, 583, 686
Alw26I	GTCTC	4 cut(s)	57, 96, 651, 780
AlwI	GGATC	1 cut(s)	664
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	2 cut(s)	145, 197
ApeKI	GCWGC	3 cut(s)	68, 168, 387
ApoI	RAATTY	1 cut(s)	517
AspS9I	GGNCC	2 cut(s)	44, 806
AsuHPI	GGTGA	1 cut(s)	842
AvaII	GGWCC	2 cut(s)	44, 806
AxyI	CCTNAGG	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	80, 155, 399
BccI	CCATC	5 cut(s)	98, 259, 270, 496, 718
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	303
BclI	TGATCA	2 cut(s)	562, 703
BcoDI	GTCTC	4 cut(s)	57, 96, 651, 780
BisI	GCNGC	3 cut(s)	69, 169, 388
BlsI	GCNGC	3 cut(s)	70, 170, 389
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	2 cut(s)	44, 806
BmgT120I	GGNCC	2 cut(s)	44, 806
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	492, 806
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 687
Bse1I	ACTGG	4 cut(s)	88, 338, 795, 817
Bse21I	CCTNAGG	1 cut(s)	149
Bse3DI	GCAATG	2 cut(s)	285, 494
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	488, 821
BseLI	CCNNNNNNNGG	2 cut(s)	120, 687
BseMI	GCAATG	2 cut(s)	285, 494
BseMII	CTCAG	5 cut(s)	140, 185, 216, 518, 662
BseNI	ACTGG	4 cut(s)	88, 338, 795, 817
BseRI	GAGGAG	2 cut(s)	242, 245
BseXI	GCAGC	3 cut(s)	80, 155, 399
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	1 cut(s)	552
BshFI	GGCC	2 cut(s)	147, 199
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	120, 687
BsmAI	GTCTC	4 cut(s)	57, 96, 651, 780
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	147, 199
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	562, 656, 703
BspACI	CCGC	4 cut(s)	111, 154, 159, 178
BspANI	GGCC	2 cut(s)	147, 199
BspCNI	CTCAG	5 cut(s)	141, 186, 217, 519, 661
BspEI	TCCGGA	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	664
BspQI	GCTCTTC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	285, 494
BsrI	ACTGG	4 cut(s)	88, 338, 795, 817
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	562, 656, 703
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	215, 403, 637
Bst6I	CTCTTC	2 cut(s)	32, 158
BstAPI	GCANNNNNTGC	3 cut(s)	15, 246, 413
BstC8I	GCNNGC	2 cut(s)	115, 145
BstDEI	CTNAG	5 cut(s)	149, 194, 225, 527, 648
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	488, 821
BstKTI	GATC	3 cut(s)	565, 659, 706
BstMAI	GTCTC	4 cut(s)	57, 96, 651, 780
BstMBI	GATC	3 cut(s)	562, 656, 703
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 105, 114, 165, 246, 413
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	2 cut(s)	301, 778
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	80, 155, 399
BstV2I	GAAGAC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	147, 199
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	488, 821
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	3 cut(s)	106, 222, 802
Cac8I	GCNNGC	2 cut(s)	115, 145
Cfr13I	GGNCC	2 cut(s)	44, 806
CseI	GACGC	2 cut(s)	15, 74
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	5 cut(s)	15, 95, 298, 547, 775
DdeI	CTNAG	5 cut(s)	149, 194, 225, 527, 648
DpnI	GATC	3 cut(s)	564, 658, 705
DpnII	GATC	3 cut(s)	562, 656, 703
Eam1104I	CTCTTC	2 cut(s)	32, 158
EarI	CTCTTC	2 cut(s)	32, 158
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	44, 806
Eco81I	CCTNAGG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	399
FaeI	CATG	5 cut(s)	18, 98, 301, 550, 778
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	14, 94, 297, 546, 774
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	2 cut(s)	562, 703
Fnu4HI	GCNGC	3 cut(s)	69, 169, 388
FokI	GGATG	2 cut(s)	475, 828
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	3 cut(s)	69, 169, 388
GluI	GCNGC	3 cut(s)	69, 169, 388
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	147, 199
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	2 cut(s)	15, 74
Hin1II	CATG	5 cut(s)	18, 98, 301, 550, 778
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	5 cut(s)	124, 429, 455, 671, 691
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	1 cut(s)	763
Hpy188I	TCNGA	3 cut(s)	195, 598, 670
Hpy188III	TCNNGA	6 cut(s)	56, 426, 522, 650, 701, 707
Hpy8I	GTNNAC	1 cut(s)	763
HpyCH4III	ACNGT	3 cut(s)	215, 403, 637
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	6 cut(s)	249, 407, 499, 533, 608, 819
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 105, 114, 165, 246, 413
HpyF3I	CTNAG	5 cut(s)	149, 194, 225, 527, 648
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	18, 98, 301, 550, 778
Kpn2I	TCCGGA	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	562, 703
Kzo9I	GATC	3 cut(s)	562, 656, 703
LguI	GCTCTTC	1 cut(s)	158
Lsp1109I	GCAGC	3 cut(s)	80, 155, 399
LweI	GCATC	2 cut(s)	492, 806
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	20, 623
MalI	GATC	3 cut(s)	564, 658, 705
MboI	GATC	3 cut(s)	562, 656, 703
MboII	GAAGA	8 cut(s)	49, 71, 74, 175, 318, 337, 364, 669
MfeI	CAATTG	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	4 cut(s)	118, 344, 418, 517
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	833
MroI	TCCGGA	1 cut(s)	55
MseI	TTAA	2 cut(s)	347, 554
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	303
MunI	CAATTG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	6 cut(s)	15, 105, 114, 165, 246, 413
NdeII	GATC	3 cut(s)	562, 656, 703
NlaIII	CATG	5 cut(s)	18, 98, 301, 550, 778
NlaIV	GGNNCC	1 cut(s)	109
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	2 cut(s)	301, 778
PciSI	GCTCTTC	1 cut(s)	158
PfeI	GAWTC	4 cut(s)	124, 429, 671, 691
PflMI	CCANNNNNTGG	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	70, 170, 389
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	2 cut(s)	44, 806
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	347, 554
SatI	GCNGC	3 cut(s)	69, 169, 388
Sau3AI	GATC	3 cut(s)	562, 656, 703
Sau96I	GGNCC	2 cut(s)	44, 806
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	2 cut(s)	492, 806
SinI	GGWCC	2 cut(s)	44, 806
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	118, 344, 418, 517
SsiI	CCGC	4 cut(s)	111, 154, 159, 178
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	3 cut(s)	215, 403, 637
TaiI	ACGT	1 cut(s)	36
TasI	AATT	4 cut(s)	118, 344, 418, 517
TfiI	GAWTC	4 cut(s)	124, 429, 671, 691
Tru1I	TTAA	2 cut(s)	347, 554
Tru9I	TTAA	2 cut(s)	347, 554
TscAI	CASTG	3 cut(s)	106, 229, 802
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	68, 168, 387
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	116, 630, 663
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	106, 229, 802
Van91I	CCANNNNNTGG	1 cut(s)	120
VpaK11BI	GGWCC	2 cut(s)	44, 806
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	2 cut(s)	301, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.