Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Forward (+)

52511017 .. 52536702

Gene Structure 25686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0379200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1989 bp

ATGAAGTCCCTTGCGGCCACCGCGGCGGACATCTTGAAGACCCCGACGTTCATCAAAATTACAGCTATTGCCGTCGCCTCCCTCACCCTCTTCGTCCTCGCCAACCACTACTCCGCTTCCTACTCTCCCTTCTCCTCCTCCACCGCCACCGCCACCGCCACAACCTCCGCCACTCACTCTCTCGCATCTCCGGCGCCGGAATCCTCTCCACCGACACCTCCCGCTTCTCCTCCACCGCCGCCGCCTTCACCGCCTCCGCCTCCACCCCCGGAGGTGGAGAGGATGGGGATAGTGGACGAGAACGGCGCGATGTCGGAGGAGTTCAAGGTCGGCGAGTTCGACGCGAGCCTGGCCGAGGAGCTGAAGAATGCGAGCGGTGGAGTGAAGGATGGGAGTGGCGGTGACGGCAATGGCGGTGGTGTTAGGGTTAAGATTGACAAGTTTGGGGTGTGTGATCAGAAATTCACTGATTATATACCGTGTTTGGACAATGTGGATGAGATTAAGAAGCTGAACTCGACTGAGAGAGGTGAAAAGTTTGAAAGGCATTGTCCTGGAGAAGGCAAGAGGCTGAATTGCTTGGTGCCGAGGCCGAAAGGGTATCAGATTCGAATTCCTTGGCCTCAGAGCAGAGATGAGGTGTGGTTCAGTAATGTACCCCATACAAGACTTGTCGAAGATAAAGGTGGTCAAAATTGGATAGCGATTAAGAAAGATAAATTTGTGTTTCCTGGAGGCGGAACACAGTTTATTCATGGGGCAAATGAGTACTTGGATCAGATTTCTCAGATGATTCCTGAAATTGCATTTGGCCGCAAGACCCGAGTAGCGTTAGATGTTGGTTGTGGAGTAGCGAGTTTTGGTGCCTTTTTGATGCAACGGAATGTGACCACTCTGTCAGTAGCGCCAAAAGATGTCCATGAGAACCAGATCCAGTTTGCACTAGAGCGTGGTGTGCCTGCCATGGTGGCAGTGTTTGCAACTCACCGCTTGTTGTATCCAAGCCAGGCTTTTGACTTGATCCACTGTTCAAGATGTAGAATTAATTGGACTCGTGATGACGGAATTTGGCTTCTCGAGGTTGACAGGTTGCTGAGAGCAGGAGGATATTTTGTTTGGGCAGCGCAGCCTGTTTATAAACATGAAGAAGCCCTACAAGTACAATGGAAAGAAATGGAGGACCTGACTACACGCATTTGCTGGGAACTTATAAAGAAGGAAGGGATGATTGCCATATGGAGGAAACCTTTGAACAACAGCTGCTATCTTAGTCGTGATGTCGAAGTGCAGCCTCCATTATGTGATTCCAGTGATGATCCAGACAATGTTTGGTATGTTGGTTTGAAGGCATGCATCACTCGGTTACCTGAAAATGGTTATGGAGCAAATGTTTCTTTGTGGCCTGCAAGGCTTCAGGATCCACCAGACAGACTCCAGAGCATACGATTAGATGCCTATATATCTAGAAAAGAAATCTTCACGGCTGAGGCAAAGTACTGGAATGAAATATTAACAGGTTATGTTGGTGCTTACCATTGGAAAGAGTTAAACTTTAGAAACATAATGGACATGAGGGCTGGATATGGAGGGTTTGCAGCAGCATTGCATGACCACGGGCTAGATTGTTGGGTAATGAATGTTGTTCCTGTTTCTGGGTTCAACACCTTACCAGTTATTTATGACCGTGGACTTATCGGAGTAATGCATGACTGGTGTGAGCCATTTGACACTTATCCAAGAACATATGACTTATTGCACGCAGCGGGTCTCTTCTCTATCGAGCAAAAGAGGTGTAAGATCTCAACCATCATTCTTGAAATGGACCGAATGTTAAGGCCTGGGGGACGCGTTTATATACGTGACTCTGTGTCTGTAATTGGTGAGCTTCACGAACTTGCAAATGCGGTTGGATGGGTGCCTGCACTACACGATACAGGAGAAGGACCCCATGCAAGCTGGAAGATCTTAATAGGTGACAAGCGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

662

Amino Acids

73.6

Weight (kDa)

6.05

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	157 - 660	1.3e-226	Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_11	PF08241	278 - 372	4.7e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1137, 1211
AasI	GACNNNNNNGTC	1 cut(s)	895
AccB1I	GGYRCC	4 cut(s)	193, 583, 863, 1915
AccBSI	CCGCTC	1 cut(s)	375
AccII	CGCG	4 cut(s)	23, 308, 344, 1848
AclWI	GGATC	6 cut(s)	783, 925, 1015, 1310, 1412, 1425
AcoI	YGGCCR	3 cut(s)	15, 351, 811
AcsI	RAATTY	4 cut(s)	461, 612, 719, 1065
AcuI	CTGAAG	2 cut(s)	383, 1397
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	4 cut(s)	657, 770, 1161, 1496
AfiI	CCNNNNNNNGG	7 cut(s)	274, 355, 560, 737, 1239, 1373, 1652
AflIII	ACRYGT	1 cut(s)	1846
AgsI	TTSAA	8 cut(s)	37, 325, 542, 1032, 1252, 1345, 1660, 1817
AhdI	GACNNNNNGTC	1 cut(s)	1867
AjnI	CCWGG	5 cut(s)	348, 553, 730, 1005, 1837
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AluBI	AGCT	6 cut(s)	65, 361, 511, 1260, 1885, 1956
AluI	AGCT	6 cut(s)	65, 361, 511, 1260, 1885, 1956
Alw26I	GTCTC	1 cut(s)	1772
AlwI	GGATC	6 cut(s)	783, 925, 1015, 1310, 1412, 1425
Ama87I	CYCGRG	2 cut(s)	822, 1076
AoxI	GGCC	7 cut(s)	15, 351, 590, 620, 811, 1400, 1835
ApeKI	GCWGC	7 cut(s)	1121, 1126, 1260, 1288, 1595, 1598, 1760
ApoI	RAATTY	4 cut(s)	461, 612, 719, 1065
AseI	ATTAAT	1 cut(s)	1044
AspLEI	GCGC	4 cut(s)	196, 308, 907, 1126
AspS9I	GGNCC	3 cut(s)	1180, 1822, 1943
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	7 cut(s)	76, 240, 413, 542, 977, 1892, 1985
AsuII	TTCGAA	1 cut(s)	610
AvaI	CYCGRG	2 cut(s)	822, 1076
AvaII	GGWCC	3 cut(s)	1180, 1822, 1943
BamHI	GGATCC	1 cut(s)	1417
BanI	GGYRCC	4 cut(s)	193, 583, 863, 1915
BarI	GAAGNNNNNNTAC	2 cut(s)	1137, 1169
BauI	CACGAG	1 cut(s)	1053
BbsI	GAAGAC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	1485
BbvI	GCAGC	7 cut(s)	1133, 1138, 1247, 1300, 1607, 1610, 1772
BccI	CCATC	4 cut(s)	277, 383, 1814, 1905
BceAI	ACGGC	4 cut(s)	56, 319, 421, 1497
BciT130I	CCWGG	5 cut(s)	350, 555, 732, 1007, 1839
BciVI	GTATCC	1 cut(s)	1008
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	1772
BfaI	CTAG	3 cut(s)	944, 1464, 1619
BfoI	RGCGCY	2 cut(s)	197, 908
BfuI	GTATCC	1 cut(s)	1008
BglI	GCCNNNNNGGC	3 cut(s)	23, 968, 1408
BglII	AGATCT	2 cut(s)	1797, 1962
BmcAI	AGTACT	2 cut(s)	770, 1496
Bme1390I	CCNGG	6 cut(s)	269, 350, 555, 732, 1007, 1839
Bme18I	GGWCC	3 cut(s)	1180, 1822, 1943
BmeRI	GACNNNNNGTC	1 cut(s)	1867
BmeT110I	CYCGRG	2 cut(s)	822, 1076
BmgT120I	GGNCC	3 cut(s)	1180, 1822, 1943
BmiI	GGNNCC	6 cut(s)	195, 585, 865, 1419, 1917, 1945
BmrFI	CCNGG	6 cut(s)	269, 350, 555, 732, 1007, 1839
BmsI	GCATC	4 cut(s)	194, 864, 1362, 1441
BpiI	GAAGAC	1 cut(s)	44
BpmI	CTGGAG	3 cut(s)	576, 753, 1418
Bpu10I	CCTNAGC	1 cut(s)	1485
Bpu14I	TTCGAA	1 cut(s)	610
BpuMI	CCSGG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	1859
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	1772
BsaJI	CCNNGG	9 cut(s)	21, 267, 354, 587, 617, 963, 1612, 1684, 1838
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 385, 415, 1374, 1404
Bsc4I	CCNNNNNNNGG	7 cut(s)	274, 355, 560, 737, 1239, 1373, 1652
Bse1I	ACTGG	5 cut(s)	934, 1308, 1502, 1670, 1715
Bse3DI	GCAATG	2 cut(s)	415, 1601
BseBI	CCWGG	5 cut(s)	350, 555, 732, 1007, 1839
BseDI	CCNNGG	9 cut(s)	21, 267, 354, 587, 617, 963, 1612, 1684, 1838
BseGI	GGATG	5 cut(s)	288, 394, 502, 1230, 1916
BseLI	CCNNNNNNNGG	7 cut(s)	274, 355, 560, 737, 1239, 1373, 1652
BseMI	GCAATG	2 cut(s)	415, 1601
BseMII	CTCAG	5 cut(s)	513, 638, 800, 1085, 1476
BseNI	ACTGG	5 cut(s)	934, 1308, 1502, 1670, 1715
BseRI	GAGGAG	5 cut(s)	124, 127, 219, 332, 371
BseXI	GCAGC	7 cut(s)	1133, 1138, 1247, 1300, 1607, 1610, 1772
BseYI	CCCAGC	1 cut(s)	1200
BsgI	GTGCAG	2 cut(s)	1307, 1905
Bsh1236I	CGCG	4 cut(s)	23, 308, 344, 1848
BshFI	GGCC	7 cut(s)	17, 353, 592, 622, 813, 1402, 1837
BshNI	GGYRCC	4 cut(s)	193, 583, 863, 1915
BsiHKCI	CYCGRG	2 cut(s)	822, 1076
BsiSI	CCGG	3 cut(s)	191, 197, 269
BslFI	GGGAC	1 cut(s)	1857
BslI	CCNNNNNNNGG	7 cut(s)	274, 355, 560, 737, 1239, 1373, 1652
BsmAI	GTCTC	1 cut(s)	1772
BsmFI	GGGAC	1 cut(s)	1857
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	7 cut(s)	17, 353, 592, 622, 813, 1402, 1837
Bso31I	GGTCTC	1 cut(s)	1772
BsoBI	CYCGRG	2 cut(s)	822, 1076
Bsp119I	TTCGAA	1 cut(s)	610
Bsp143I	GATC	8 cut(s)	454, 775, 930, 1020, 1315, 1417, 1797, 1962
Bsp19I	CCATGG	1 cut(s)	963
BspANI	GGCC	7 cut(s)	17, 353, 592, 622, 813, 1402, 1837
BspCNI	CTCAG	5 cut(s)	514, 637, 799, 1086, 1477
BspFNI	CGCG	4 cut(s)	23, 308, 344, 1848
BspLI	GGNNCC	6 cut(s)	195, 585, 865, 1419, 1917, 1945
BspPI	GGATC	6 cut(s)	783, 925, 1015, 1310, 1412, 1425
BspT104I	TTCGAA	1 cut(s)	610
BspT107I	GGYRCC	4 cut(s)	193, 583, 863, 1915
BspTNI	GGTCTC	1 cut(s)	1772
BsrBI	CCGCTC	1 cut(s)	375
BsrDI	GCAATG	2 cut(s)	415, 1601
BsrI	ACTGG	5 cut(s)	934, 1308, 1502, 1670, 1715
BssECI	CCNNGG	9 cut(s)	21, 267, 354, 587, 617, 963, 1612, 1684, 1838
BssMI	GATC	8 cut(s)	454, 775, 930, 1020, 1315, 1417, 1797, 1962
BssNI	GRCGYC	1 cut(s)	194
BssSI	CACGAG	1 cut(s)	1053
BssT1I	CCWWGG	2 cut(s)	617, 963
Bst2BI	CACGAG	1 cut(s)	1053
Bst2UI	CCWGG	5 cut(s)	350, 555, 732, 1007, 1839
Bst4CI	ACNGT	4 cut(s)	480, 747, 1028, 1685
Bst6I	CTCTTC	2 cut(s)	95, 1775
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstBAI	YACGTR	1 cut(s)	1859
BstBI	TTCGAA	1 cut(s)	610
BstC8I	GCNNGC	8 cut(s)	346, 373, 960, 1351, 1404, 1758, 1920, 1954
BstDEI	CTNAG	6 cut(s)	522, 624, 786, 1094, 1268, 1485
BstDSI	CCRYGG	4 cut(s)	21, 963, 1612, 1684
BstEII	GGTNACC	1 cut(s)	1362
BstENI	CCTNNNNNAGG	2 cut(s)	353, 558
BstF5I	GGATG	5 cut(s)	288, 394, 502, 1230, 1916
BstFNI	CGCG	4 cut(s)	23, 308, 344, 1848
BstH2I	RGCGCY	2 cut(s)	197, 908
BstHHI	GCGC	4 cut(s)	196, 308, 907, 1126
BstKTI	GATC	8 cut(s)	457, 778, 933, 1023, 1318, 1420, 1800, 1965
BstMAI	GTCTC	1 cut(s)	1772
BstMBI	GATC	8 cut(s)	454, 775, 930, 1020, 1315, 1417, 1797, 1962
BstNI	CCWGG	5 cut(s)	350, 555, 732, 1007, 1839
BstNSI	RCATGY	1 cut(s)	1353
BstPI	GGTNACC	1 cut(s)	1362
BstSCI	CCNGG	6 cut(s)	267, 348, 553, 730, 1005, 1837
BstUI	CGCG	4 cut(s)	23, 308, 344, 1848
BstV1I	GCAGC	7 cut(s)	1133, 1138, 1247, 1300, 1607, 1610, 1772
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	4 cut(s)	930, 1417, 1797, 1962
BstYI	RGATCY	4 cut(s)	930, 1417, 1797, 1962
BsuI	GTATCC	1 cut(s)	1008
BsuRI	GGCC	7 cut(s)	17, 353, 592, 622, 813, 1402, 1837
BtgI	CCRYGG	4 cut(s)	21, 963, 1612, 1684
BtgZI	GCGATG	1 cut(s)	323
BtsCI	GGATG	5 cut(s)	288, 394, 502, 1230, 1916
BtsI	GCAGTG	1 cut(s)	978
BtsIMutI	CAGTG	4 cut(s)	465, 978, 1024, 1315
Cac8I	GCNNGC	8 cut(s)	346, 373, 960, 1351, 1404, 1758, 1920, 1954
CfoI	GCGC	4 cut(s)	196, 308, 907, 1126
Cfr13I	GGNCC	3 cut(s)	1180, 1822, 1943
Cfr42I	CCGCGG	1 cut(s)	24
CseI	GACGC	2 cut(s)	350, 1854
Csp6I	GTAC	4 cut(s)	656, 769, 1160, 1495
CspCI	CAANNNNNGTGG	2 cut(s)	397, 432
CviAII	CATG	9 cut(s)	755, 920, 964, 1142, 1350, 1570, 1607, 1706, 1949
CviQI	GTAC	4 cut(s)	656, 769, 1160, 1495
DdeI	CTNAG	6 cut(s)	522, 624, 786, 1094, 1268, 1485
DinI	GGCGCC	1 cut(s)	195
DpnI	GATC	8 cut(s)	456, 777, 932, 1022, 1317, 1419, 1799, 1964
DpnII	GATC	8 cut(s)	454, 775, 930, 1020, 1315, 1417, 1797, 1962
DrdI	GACNNNNNNGTC	1 cut(s)	895
DriI	GACNNNNNGTC	1 cut(s)	1867
DseDI	GACNNNNNNGTC	1 cut(s)	895
EaeI	YGGCCR	3 cut(s)	15, 351, 811
Eam1104I	CTCTTC	2 cut(s)	95, 1775
Eam1105I	GACNNNNNGTC	1 cut(s)	1867
EarI	CTCTTC	2 cut(s)	95, 1775
EciI	GGCGGA	4 cut(s)	41, 157, 246, 753
Eco130I	CCWWGG	2 cut(s)	617, 963
Eco147I	AGGCCT	1 cut(s)	1837
Eco31I	GGTCTC	1 cut(s)	1772
Eco47I	GGWCC	3 cut(s)	1180, 1822, 1943
Eco57I	CTGAAG	2 cut(s)	383, 1397
Eco88I	CYCGRG	2 cut(s)	822, 1076
Eco91I	GGTNACC	1 cut(s)	1362
EcoNI	CCTNNNNNAGG	2 cut(s)	353, 558
EcoO109I	RGGNCCY	2 cut(s)	1180, 1943
EcoO65I	GGTNACC	1 cut(s)	1362
EcoRI	GAATTC	1 cut(s)	612
EcoRII	CCWGG	5 cut(s)	348, 553, 730, 1005, 1837
EcoT14I	CCWWGG	2 cut(s)	617, 963
EcoT22I	ATGCAT	2 cut(s)	1355, 1707
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
ErhI	CCWWGG	2 cut(s)	617, 963
FaeI	CATG	9 cut(s)	758, 923, 967, 1145, 1353, 1573, 1610, 1709, 1952
FalI	AAGNNNNNCTT	2 cut(s)	994, 1026
FaqI	GGGAC	1 cut(s)	1857
FatI	CATG	9 cut(s)	754, 919, 963, 1141, 1349, 1569, 1606, 1705, 1948
FauI	CCCGC	2 cut(s)	229, 1756
FauNDI	CATATG	2 cut(s)	1235, 1744
FbaI	TGATCA	1 cut(s)	454
FokI	GGATG	5 cut(s)	295, 401, 509, 1237, 1923
FspBI	CTAG	3 cut(s)	944, 1464, 1619
GlaI	GCGC	4 cut(s)	195, 307, 906, 1125
GsaI	CCCAGC	1 cut(s)	1204
GsuI	CTGGAG	3 cut(s)	576, 753, 1418
HaeII	RGCGCY	2 cut(s)	197, 908
HaeIII	GGCC	7 cut(s)	17, 353, 592, 622, 813, 1402, 1837
HapII	CCGG	3 cut(s)	191, 197, 269
HgaI	GACGC	2 cut(s)	350, 1854
HhaI	GCGC	4 cut(s)	196, 308, 907, 1126
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	9 cut(s)	758, 923, 967, 1145, 1353, 1573, 1610, 1709, 1952
Hin6I	GCGC	4 cut(s)	194, 306, 905, 1124
HinP1I	GCGC	4 cut(s)	194, 306, 905, 1124
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HinfI	GANTC	7 cut(s)	200, 607, 793, 1051, 1304, 1431, 1862
HpaII	CCGG	3 cut(s)	191, 197, 269
HphI	GGTGA	7 cut(s)	76, 240, 413, 542, 977, 1892, 1985
Hpy166II	GTNNAC	3 cut(s)	295, 1084, 1688
Hpy188I	TCNGA	7 cut(s)	316, 459, 606, 627, 780, 789, 1697
Hpy8I	GTNNAC	3 cut(s)	295, 1084, 1688
Hpy99I	CGWCG	3 cut(s)	49, 77, 344
HpyAV	CCTTC	8 cut(s)	139, 255, 379, 554, 1210, 1214, 1339, 1934
HpyCH4III	ACNGT	4 cut(s)	480, 747, 1028, 1685
HpyCH4IV	ACGT	2 cut(s)	47, 1858
HpyF3I	CTNAG	6 cut(s)	522, 624, 786, 1094, 1268, 1485
HpySE526I	ACGT	2 cut(s)	47, 1858
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	9 cut(s)	758, 923, 967, 1145, 1353, 1573, 1610, 1709, 1952
HspAI	GCGC	4 cut(s)	194, 306, 905, 1124
KasI	GGCGCC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	454
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	8 cut(s)	454, 775, 930, 1020, 1315, 1417, 1797, 1962
LmnI	GCTCC	2 cut(s)	358, 1382
Lsp1109I	GCAGC	7 cut(s)	1133, 1138, 1247, 1300, 1607, 1610, 1772
LweI	GCATC	4 cut(s)	194, 864, 1362, 1441
MaeI	CTAG	3 cut(s)	944, 1464, 1619
MaeII	ACGT	2 cut(s)	47, 1858
MaeIII	GTNAC	5 cut(s)	401, 886, 1362, 1859, 1973
MalI	GATC	8 cut(s)	456, 777, 932, 1022, 1317, 1419, 1799, 1964
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	8 cut(s)	454, 775, 930, 1020, 1315, 1417, 1797, 1962
MboII	GAAGA	8 cut(s)	49, 82, 376, 689, 1157, 1468, 1762, 1972
MflI	RGATCY	4 cut(s)	930, 1417, 1797, 1962
MluI	ACGCGT	1 cut(s)	1846
Mly113I	GGCGCC	1 cut(s)	194
MlyI	GAGTC	3 cut(s)	1045, 1425, 1856
MmeI	TCCRAC	2 cut(s)	294, 1888
Mph1103I	ATGCAT	2 cut(s)	1355, 1707
MseI	TTAA	8 cut(s)	429, 504, 708, 1044, 1511, 1547, 1832, 1967
MspA1I	CMGCKG	3 cut(s)	23, 1260, 1763
MspI	CCGG	3 cut(s)	191, 197, 269
MspR9I	CCNGG	6 cut(s)	269, 350, 555, 732, 1007, 1839
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	5 cut(s)	350, 555, 732, 1007, 1839
MvnI	CGCG	4 cut(s)	23, 308, 344, 1848
NarI	GGCGCC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	963
NdeI	CATATG	2 cut(s)	1235, 1744
NdeII	GATC	8 cut(s)	454, 775, 930, 1020, 1315, 1417, 1797, 1962
NlaIII	CATG	9 cut(s)	758, 923, 967, 1145, 1353, 1573, 1610, 1709, 1952
NlaIV	GGNNCC	6 cut(s)	195, 585, 865, 1419, 1917, 1945
NmeAIII	GCCGAG	2 cut(s)	379, 612
NmuCI	GTSAC	4 cut(s)	401, 886, 1859, 1973
NsiI	ATGCAT	2 cut(s)	1355, 1707
NspI	RCATGY	1 cut(s)	1353
NspV	TTCGAA	1 cut(s)	610
PaeI	GCATGC	1 cut(s)	1353
PaeR7I	CTCGAG	1 cut(s)	1076
PceI	AGGCCT	1 cut(s)	1837
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	4 cut(s)	200, 607, 793, 1304
PfoI	TCCNGGA	2 cut(s)	553, 730
PleI	GAGTC	3 cut(s)	1045, 1425, 1856
PluTI	GGCGCC	1 cut(s)	197
PpsI	GAGTC	3 cut(s)	1045, 1425, 1856
Ppu21I	YACGTR	1 cut(s)	1859
PpuMI	RGGWCCY	2 cut(s)	1180, 1943
PshBI	ATTAAT	1 cut(s)	1044
PsiI	TTATAA	2 cut(s)	1137, 1211
Psp5II	RGGWCCY	2 cut(s)	1180, 1943
Psp6I	CCWGG	5 cut(s)	348, 553, 730, 1005, 1837
PspEI	GGTNACC	1 cut(s)	1362
PspFI	CCCAGC	1 cut(s)	1200
PspGI	CCWGG	5 cut(s)	348, 553, 730, 1005, 1837
PspN4I	GGNNCC	6 cut(s)	195, 585, 865, 1419, 1917, 1945
PspPI	GGNCC	3 cut(s)	1180, 1822, 1943
PspPPI	RGGWCCY	2 cut(s)	1180, 1943
PsuI	RGATCY	4 cut(s)	930, 1417, 1797, 1962
PvuII	CAGCTG	1 cut(s)	1260
RsaI	GTAC	4 cut(s)	657, 770, 1161, 1496
RsaNI	GTAC	4 cut(s)	656, 769, 1160, 1495
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	8 cut(s)	429, 504, 708, 1044, 1511, 1547, 1832, 1967
Sau3AI	GATC	8 cut(s)	454, 775, 930, 1020, 1315, 1417, 1797, 1962
Sau96I	GGNCC	3 cut(s)	1180, 1822, 1943
ScaI	AGTACT	2 cut(s)	770, 1496
SchI	GAGTC	3 cut(s)	1045, 1425, 1856
ScrFI	CCNGG	6 cut(s)	269, 350, 555, 732, 1007, 1839
SfaNI	GCATC	4 cut(s)	194, 864, 1362, 1441
SfoI	GGCGCC	1 cut(s)	195
Sfr274I	CTCGAG	1 cut(s)	1076
Sfr303I	CCGCGG	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	610
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	3 cut(s)	1180, 1822, 1943
SlaI	CTCGAG	1 cut(s)	1076
SmlI	CTYRAG	1 cut(s)	1076
SmoI	CTYRAG	1 cut(s)	1076
SphI	GCATGC	1 cut(s)	1353
SseBI	AGGCCT	1 cut(s)	1837
SspDI	GGCGCC	1 cut(s)	193
SspI	AATATT	1 cut(s)	1509
SspMI	CTAG	3 cut(s)	944, 1464, 1619
StuI	AGGCCT	1 cut(s)	1837
StyD4I	CCNGG	6 cut(s)	267, 348, 553, 730, 1005, 1837
StyI	CCWWGG	2 cut(s)	617, 963
TaaI	ACNGT	4 cut(s)	480, 747, 1028, 1685
TaiI	ACGT	2 cut(s)	50, 1861
TaqI	TCGA	7 cut(s)	339, 518, 610, 675, 1077, 1281, 1779
TaqII	GACCGA	1 cut(s)	1839
TatI	WGTACW	3 cut(s)	768, 1159, 1494
TauI	GCSGC	5 cut(s)	17, 26, 241, 244, 816
TfiI	GAWTC	4 cut(s)	200, 607, 793, 1304
Tru1I	TTAA	8 cut(s)	429, 504, 708, 1044, 1511, 1547, 1832, 1967
Tru9I	TTAA	8 cut(s)	429, 504, 708, 1044, 1511, 1547, 1832, 1967
TscAI	CASTG	4 cut(s)	472, 978, 1031, 1315
TseFI	GTSAC	4 cut(s)	401, 886, 1859, 1973
TseI	GCWGC	7 cut(s)	1121, 1126, 1260, 1288, 1595, 1598, 1760
Tsp45I	GTSAC	4 cut(s)	401, 886, 1859, 1973
TspDTI	ATGAA	6 cut(s)	17, 40, 743, 1158, 1518, 1649
TspGWI	ACGGA	2 cut(s)	895, 1077
TspRI	CASTG	4 cut(s)	472, 978, 1031, 1315
VpaK11BI	GGWCC	3 cut(s)	1180, 1822, 1943
VspI	ATTAAT	1 cut(s)	1044
XagI	CCTNNNNNAGG	2 cut(s)	353, 558
XapI	RAATTY	4 cut(s)	461, 612, 719, 1065
XbaI	TCTAGA	1 cut(s)	1463
XceI	RCATGY	1 cut(s)	1353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1326
XhoI	CTCGAG	1 cut(s)	1076
XspI	CTAG	3 cut(s)	944, 1464, 1619
ZrmI	AGTACT	2 cut(s)	770, 1496
Zsp2I	ATGCAT	2 cut(s)	1355, 1707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.