Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001195.1

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Forward (+)

94938 .. 100029

Gene Structure 5092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001195.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggccccagctaggatgcatgggaggcccgtgggttcaaatgatactttgacacattccaatcttttgttcatcaagactcaaaatcagtctcatgagaatcttccggattatggttatcgttgggggacgcctcaacgacgaacagataatgatgtgaaaaactattggaacacaaagttgaagaaaaagctgctggcggttgctgcaagaaataacattgtggctgctagacggacatgtgatcacaacattgctgatcagttttcagctccagttcctcccaaaatcgaaacccctcatggccccaagacttcatcttgtttaggtggcacattaccatatgcagcgaacataagtttggtgcatagttttgatcaaccaaagcaaacttttgaaccctggtgcaatcattctgattcaaagcctatggaagtttctgattttggcagcactagtgaaagtaacagtttcagtattccactatctcatcaggaagtttcaaggcttcccagttcatccagtttggctcagctggatcagtaccattgctccttgtggtctggacatgaaggtatcaattacgttaacagcgagttccttatggacttcggattcgaaactccttctgctgatcagtttcttctgggtggctttggtcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

221

Amino Acids

24.61

Weight (kDa)

6.58

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	546
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	2 cut(s)	12, 113
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	5 cut(s)	39, 184, 398, 423, 504
AhlI	ACTAGT	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	401
AjuI	GAANNNNNNNTTGG	4 cut(s)	53, 85, 344, 376
AluBI	AGCT	4 cut(s)	11, 193, 272, 535
AluI	AGCT	4 cut(s)	11, 193, 272, 535
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	546
Aor13HI	TCCGGA	1 cut(s)	106
AoxI	GGCC	3 cut(s)	3, 26, 304
ApeKI	GCWGC	5 cut(s)	193, 206, 227, 347, 450
ArsI	GACNNNNNNTTYG	2 cut(s)	599, 631
AspS9I	GGNCC	3 cut(s)	4, 27, 305
AsuII	TTCGAA	1 cut(s)	618
BbvI	GCAGC	5 cut(s)	180, 193, 214, 359, 462
BciT130I	CCWGG	1 cut(s)	403
BclI	TGATCA	4 cut(s)	244, 259, 376, 634
BcoDI	GTCTC	1 cut(s)	96
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	3 cut(s)	12, 231, 456
BisI	GCNGC	5 cut(s)	194, 207, 228, 348, 451
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	5 cut(s)	195, 208, 229, 349, 452
Bme1390I	CCNGG	1 cut(s)	403
BmgT120I	GGNCC	3 cut(s)	4, 27, 305
BmiI	GGNNCC	2 cut(s)	6, 307
BmrFI	CCNGG	1 cut(s)	403
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	6
BmuI	ACTGGG	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	30, 401
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 113
Bse1I	ACTGG	3 cut(s)	275, 513, 522
Bse3DI	GCAATG	2 cut(s)	252, 547
BseAI	TCCGGA	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	2 cut(s)	30, 401
BseGI	GGATG	2 cut(s)	21, 518
BseLI	CCNNNNNNNGG	2 cut(s)	12, 113
BseMI	GCAATG	2 cut(s)	252, 547
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	3 cut(s)	275, 513, 522
BseXI	GCAGC	5 cut(s)	180, 193, 214, 359, 462
BseYI	CCCAGC	1 cut(s)	7
BshFI	GGCC	3 cut(s)	5, 28, 306
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	12, 113
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	3 cut(s)	5, 28, 306
Bsp119I	TTCGAA	1 cut(s)	618
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	5 cut(s)	244, 259, 376, 538, 634
Bsp1720I	GCTNAGC	1 cut(s)	531
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	3 cut(s)	5, 28, 306
BspCNI	CTCAG	1 cut(s)	544
BspEI	TCCGGA	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	6, 307
BspPI	GGATC	1 cut(s)	546
BspT104I	TTCGAA	1 cut(s)	618
BsrDI	GCAATG	2 cut(s)	252, 547
BsrI	ACTGG	3 cut(s)	275, 513, 522
BssECI	CCNNGG	2 cut(s)	30, 401
BssMI	GATC	5 cut(s)	244, 259, 376, 538, 634
BssNI	GRCGYC	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	618
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	531
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	21, 518
BstKTI	GATC	5 cut(s)	247, 262, 379, 541, 637
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	5 cut(s)	244, 259, 376, 538, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 206
BstNI	CCWGG	1 cut(s)	403
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	401
BstV1I	GCAGC	5 cut(s)	180, 193, 214, 359, 462
BsuRI	GGCC	3 cut(s)	5, 28, 306
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	21, 518
Cac8I	GCNNGC	1 cut(s)	198
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	4, 27, 305
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	5 cut(s)	20, 95, 240, 302, 569
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	5 cut(s)	246, 261, 378, 540, 636
DpnII	GATC	5 cut(s)	244, 259, 376, 538, 634
EcoRII	CCWGG	1 cut(s)	401
EcoT22I	ATGCAT	1 cut(s)	21
FaeI	CATG	5 cut(s)	23, 98, 243, 305, 572
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	5 cut(s)	19, 94, 239, 301, 568
FauNDI	CATATG	1 cut(s)	343
FbaI	TGATCA	4 cut(s)	244, 259, 376, 634
Fnu4HI	GCNGC	5 cut(s)	194, 207, 228, 348, 451
FokI	GGATG	2 cut(s)	28, 505
Fsp4HI	GCNGC	5 cut(s)	194, 207, 228, 348, 451
FspBI	CTAG	3 cut(s)	12, 231, 456
GluI	GCNGC	5 cut(s)	194, 207, 228, 348, 451
GsaI	CCCAGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	5, 28, 306
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	5 cut(s)	23, 98, 243, 305, 572
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	4 cut(s)	79, 100, 419, 615
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	3 cut(s)	418, 442, 614
Hpy188III	TCNNGA	5 cut(s)	76, 95, 107, 494, 564
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	2 cut(s)	566, 636
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	5 cut(s)	19, 209, 347, 367, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 206
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	5 cut(s)	23, 98, 243, 305, 572
Kpn2I	TCCGGA	1 cut(s)	106
Ksp22I	TGATCA	4 cut(s)	244, 259, 376, 634
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	5 cut(s)	244, 259, 376, 538, 634
LmnI	GCTCC	2 cut(s)	277, 557
Lsp1109I	GCAGC	5 cut(s)	180, 193, 214, 359, 462
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	3 cut(s)	12, 231, 456
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	5 cut(s)	246, 261, 378, 540, 636
MboI	GATC	5 cut(s)	244, 259, 376, 538, 634
MboII	GAAGA	3 cut(s)	95, 196, 635
MluCI	AATT	1 cut(s)	580
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	4 cut(s)	18, 144, 291, 309
Mph1103I	ATGCAT	1 cut(s)	21
MroI	TCCGGA	1 cut(s)	106
MseI	TTAA	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	535
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	2 cut(s)	25, 206
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	5 cut(s)	244, 259, 376, 538, 634
NlaIII	CATG	5 cut(s)	23, 98, 243, 305, 572
NlaIV	GGNNCC	2 cut(s)	6, 307
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	618
PagI	TCATGA	1 cut(s)	94
PciI	ACATGT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PfeI	GAWTC	3 cut(s)	100, 419, 615
PkrI	GCNGC	5 cut(s)	195, 208, 229, 349, 452
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PscI	ACATGT	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	6, 307
PspPI	GGNCC	3 cut(s)	4, 27, 305
PvuII	CAGCTG	1 cut(s)	535
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	5 cut(s)	194, 207, 228, 348, 451
Sau3AI	GATC	5 cut(s)	244, 259, 376, 538, 634
Sau96I	GGNCC	3 cut(s)	4, 27, 305
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	403
SetI	ASST	7 cut(s)	13, 195, 274, 331, 537, 577, 588
SfaNI	GCATC	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	618
SpeI	ACTAGT	1 cut(s)	455
Sse9I	AATT	1 cut(s)	580
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	3 cut(s)	12, 231, 456
StyD4I	CCNGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	291, 618
TasI	AATT	1 cut(s)	580
TfiI	GAWTC	3 cut(s)	100, 419, 615
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TseI	GCWGC	5 cut(s)	193, 206, 227, 347, 450
TspDTI	ATGAA	4 cut(s)	61, 306, 507, 585
TspGWI	ACGGA	1 cut(s)	250
XceI	RCATGY	1 cut(s)	243
XspI	CTAG	3 cut(s)	12, 231, 456
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.