Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Forward (+)

66373949 .. 66374956

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G042930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGAAGAGCTCCATGTTGTGACAAAGCTAGTGTCAAAAGAGGGCAATGGTCTCCTGAGGAAGATGAAGCTCTCAAGACTTACCTTGAGACTCATGGAACTGGTGGCAATTGGATTCATCTGCCTCAAAAAGCTGGGCTTAGGAGATGTGGGAAGAGCTGCCGTCTGCGGTGGTTGAACTATCTGAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAGGAGGACAACATTATCTGTAACCTCTACACTCAAATGGGAAGCCGATGGTCATACATAGCTGCTCAAATGCCTGGAAGAACAGACAATGATGTGAAGAACTATTGGAACACCAAATTGAAGAAGAGGTTGTTTAGCAAAAACCCAAATGCCTGCTCACTCACACTGCCTTGTGTTCCAAAACTTGAAACCAATGATGAGTTTCAGACCCAAATACCTCCCACATTGATGTTATCTGATTATAATTCTGGATTGAATGCCTATGATCAAAGTTTGAGCTTAAAGCCAAATCCATTACACAACTCCAAGCTCACGGGTTTTTCACAATTTGGTGCAAGTTCTGTTTCAATGTCTCAAGATGGTTCTAGTGTTTCAGATTCGATGCTGCTGGGATACCAATGGATTTTGGATTTGGAGGATTGTCTTGTGATGTTGTCAATCAGATGTGGTTTGGAGAAAAAGCCAATGAAGTTGTTCACCCCACTTGCTCCACAGGTTTGGATGGTGATTTCTTTTTCTGCTGATGCTACTGTTCAACAAAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

255

Amino Acids

28.75

Weight (kDa)

8.51

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	1.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.5e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	4.9e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 115	3.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AciI	CCGC	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	237
AgsI	TTSAA	6 cut(s)	178, 340, 407, 475, 567, 755
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	8 cut(s)	11, 29, 71, 134, 159, 281, 498, 529
AluI	AGCT	8 cut(s)	11, 29, 71, 134, 159, 281, 498, 529
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	3 cut(s)	57, 83, 576
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	159, 281, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
Asp700I	GAANNNNTTC	1 cut(s)	692
AsuHPI	GGTGA	2 cut(s)	688, 736
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	146, 268, 591
BccI	CCATC	3 cut(s)	261, 572, 715
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	605
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	3 cut(s)	57, 83, 576
BfaI	CTAG	2 cut(s)	30, 585
BfuI	GTATCC	1 cut(s)	605
BisI	GCNGC	3 cut(s)	160, 282, 605
BlsI	GCNGC	3 cut(s)	161, 283, 606
Bme1390I	CCNGG	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	591, 733
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	3 cut(s)	59, 107, 558
BsaI	GGTCTC	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	726
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	48, 176
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	146, 268, 591
BseYI	CCCAGC	2 cut(s)	134, 607
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	13
BsmAI	GTCTC	3 cut(s)	57, 83, 576
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	484
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	49, 177
BspQI	GCTCTTC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	3 cut(s)	149, 213, 338
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	57, 140, 185
BstF5I	GGATG	1 cut(s)	726
BstKTI	GATC	1 cut(s)	487
BstMAI	GTCTC	3 cut(s)	57, 83, 576
BstMBI	GATC	1 cut(s)	484
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	3 cut(s)	146, 268, 591
BstXI	CCANNNNNNTGG	1 cut(s)	717
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	726
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	3 cut(s)	213, 383, 763
Cac8I	GCNNGC	1 cut(s)	373
CviAII	CATG	3 cut(s)	15, 95, 203
DdeI	CTNAG	3 cut(s)	57, 140, 185
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
Eam1104I	CTCTTC	3 cut(s)	149, 213, 338
EarI	CTCTTC	3 cut(s)	149, 213, 338
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	3 cut(s)	18, 98, 206
FaiI	YATR	7 cut(s)	16, 96, 204, 274, 278, 462, 483
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	3 cut(s)	14, 94, 202
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	160, 282, 605
FokI	GGATG	1 cut(s)	733
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	160, 282, 605
FspBI	CTAG	2 cut(s)	30, 585
GluI	GCNGC	3 cut(s)	160, 282, 605
GsaI	CCCAGC	2 cut(s)	138, 611
HaeIII	GGCC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	18, 98, 206
HinfI	GANTC	3 cut(s)	91, 115, 596
HphI	GGTGA	2 cut(s)	688, 736
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	5 cut(s)	186, 426, 457, 595, 662
Hpy188III	TCNNGA	4 cut(s)	56, 76, 468, 575
Hpy8I	GTNNAC	1 cut(s)	696
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4V	TGCA	1 cut(s)	554
HpyF3I	CTNAG	3 cut(s)	57, 140, 185
Hsp92II	CATG	3 cut(s)	18, 98, 206
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	1 cut(s)	484
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	16, 712
Lsp1109I	GCAGC	3 cut(s)	146, 268, 591
LweI	GCATC	2 cut(s)	591, 733
MaeI	CTAG	2 cut(s)	30, 585
MaeIII	GTNAC	2 cut(s)	20, 239
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MboII	GAAGA	8 cut(s)	18, 74, 166, 230, 309, 328, 352, 355
MfeI	CAATTG	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	4 cut(s)	109, 335, 463, 545
MlyI	GAGTC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	1 cut(s)	500
MslI	CAYNNNNRTG	2 cut(s)	254, 446
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	484
NlaIII	CATG	3 cut(s)	18, 98, 206
NmuCI	GTSAC	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	115, 596
PkrI	GCNGC	3 cut(s)	161, 283, 606
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	2 cut(s)	134, 607
PspGI	CCWGG	1 cut(s)	292
RseI	CAYNNNNRTG	2 cut(s)	254, 446
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	3 cut(s)	160, 282, 605
Sau3AI	GATC	1 cut(s)	484
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	591, 733
SmiMI	CAYNNNNRTG	2 cut(s)	254, 446
SmlI	CTYRAG	3 cut(s)	74, 86, 573
SmoI	CTYRAG	3 cut(s)	74, 86, 573
Sse9I	AATT	4 cut(s)	109, 335, 463, 545
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	2 cut(s)	30, 585
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	751
TaqI	TCGA	1 cut(s)	599
TasI	AATT	4 cut(s)	109, 335, 463, 545
TfiI	GAWTC	2 cut(s)	115, 596
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TscAI	CASTG	2 cut(s)	220, 390
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	159, 281, 604
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	81, 107, 701
TspRI	CASTG	2 cut(s)	220, 390
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	2 cut(s)	30, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.