Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Reverse (-)

3567756 .. 3568862

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGACGCACTCCATGCTGTGACAAAGACAACGTGAAGAGAGGCCCGTGGTCTCCGGAAGAAGACGCAGCTCTCAAGTCCTACCTCGAGTCTCATGGCACCGGCGGCAACTGGATTCTTCTCCCCAAAAAAGCTGGTCTGAGGCGGTGCGGGAAGAGCTGCCGTCTGCGGTGGCTGAACTATCTGAGGCCAGACATCAAACATGGAAGCTTCACTGAAGAGGAAGACAGCATTATCTTCAGTCTCTACAACCAGATGGGAAGCCGGCAAGTAAACAAATTTAAATGTTTTCTAATTTATTTGCATTTTTTAAATTTCCCCCATTTTTTTAGATGGTCGGTCATTGCTTCTCACATGCCTGGAAGAACAGACAACGATGTGAAGAACTATTGGAATACCAAGTTAAAGAAGAAACTTTTGGTTTTGGGAGGAAAGGTAAAGAATATCAGTAGCGAAGAGAGAGAGCCCACGATTACAAACAATGCCAATTTTTCTGGAATCCCAAAAACTGAGGAACCTCAAGACCCTGCCTTCTCAACTTTCCAACCAGGCACATTGCAGACGCTTTCCGATGTGAACTCCGGACTCAATGCCTACAACCAGACGCTGAGCTTAAACCCTGATCAGTTATACAGCCCCAAGCCCTTGGGTTTTTTGAATTTCGGTGCAAGTTCAAGGAGGAATTTCAGCACCACTGTTTCATTGTCTCAGGAAGGATCGAGCGTTTCGGATTCGTCTTCGATTGCTGGGAATGGTTATCTTGATCAGGATTCTTGGTTTTGTATGGATTATGGATATGGTATGGCTTATGATAATAATGTCAATTACTATGGCATGTGTTTTGAGAAAAAAACCAGTGAAGCTGTCCCATCAGGCTACACGGATTTGGGTGAATTGTTTTCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

303

Amino Acids

34.0

Weight (kDa)

8.07

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	7.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	3.1e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 133	1.9e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AccIII	TCCGGA	2 cut(s)	55, 581
AciI	CCGC	4 cut(s)	105, 145, 150, 169
AclWI	GGATC	1 cut(s)	724
AcsI	RAATTY	4 cut(s)	278, 313, 658, 682
AcuI	CTGAAG	2 cut(s)	223, 237
AgsI	TTSAA	3 cut(s)	658, 675, 903
AjnI	CCWGG	2 cut(s)	358, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	7 cut(s)	71, 134, 159, 210, 612, 863, 906
AluI	AGCT	7 cut(s)	71, 134, 159, 210, 612, 863, 906
Alw26I	GTCTC	4 cut(s)	57, 96, 248, 711
AlwI	GGATC	1 cut(s)	724
AlwNI	CAGNNNCTG	1 cut(s)	607
Ama87I	CYCGRG	1 cut(s)	86
Aor13HI	TCCGGA	2 cut(s)	55, 581
AoxI	GGCC	2 cut(s)	43, 188
ApeKI	GCWGC	2 cut(s)	68, 159
ApoI	RAATTY	4 cut(s)	278, 313, 658, 682
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	902
AvaI	CYCGRG	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	468
BbsI	GAAGAC	3 cut(s)	69, 231, 729
BbvI	GCAGC	2 cut(s)	80, 146
BccI	CCATC	3 cut(s)	250, 327, 877
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	2 cut(s)	360, 549
BclI	TGATCA	2 cut(s)	622, 763
BcoDI	GTCTC	4 cut(s)	57, 96, 248, 711
BisI	GCNGC	3 cut(s)	69, 106, 160
BlpI	GCTNAGC	1 cut(s)	608
BlsI	GCNGC	3 cut(s)	70, 107, 161
Bme1390I	CCNGG	2 cut(s)	360, 549
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	100, 516
BmrFI	CCNGG	2 cut(s)	360, 549
BpiI	GAAGAC	3 cut(s)	69, 231, 729
Bpu1102I	GCTNAGC	1 cut(s)	608
BpuEI	CTTGAG	2 cut(s)	59, 504
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	47, 645
BsaWI	WCCGGW	2 cut(s)	55, 581
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bse118I	RCCGGY	2 cut(s)	101, 264
Bse1I	ACTGG	2 cut(s)	116, 855
Bse3DI	GCAATG	2 cut(s)	342, 554
BseAI	TCCGGA	2 cut(s)	55, 581
BseBI	CCWGG	2 cut(s)	360, 549
BseDI	CCNNGG	2 cut(s)	47, 645
BseMI	GCAATG	2 cut(s)	342, 554
BseMII	CTCAG	5 cut(s)	131, 176, 501, 599, 722
BseNI	ACTGG	2 cut(s)	116, 855
BseXI	GCAGC	2 cut(s)	80, 146
BseYI	CCCAGC	1 cut(s)	746
BshFI	GGCC	2 cut(s)	45, 190
BshNI	GGYRCC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	4 cut(s)	56, 102, 265, 582
BslFI	GGGAC	2 cut(s)	18, 851
BsmAI	GTCTC	4 cut(s)	57, 96, 248, 711
BsmFI	GGGAC	2 cut(s)	18, 851
BsnI	GGCC	2 cut(s)	45, 190
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp13I	TCCGGA	2 cut(s)	55, 581
Bsp143I	GATC	3 cut(s)	622, 716, 763
Bsp1720I	GCTNAGC	1 cut(s)	608
BspACI	CCGC	4 cut(s)	105, 145, 150, 169
BspANI	GGCC	2 cut(s)	45, 190
BspCNI	CTCAG	5 cut(s)	132, 177, 502, 600, 721
BspEI	TCCGGA	2 cut(s)	55, 581
BspLI	GGNNCC	2 cut(s)	100, 516
BspPI	GGATC	1 cut(s)	724
BspQI	GCTCTTC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	342, 554
BsrFI	RCCGGY	2 cut(s)	101, 264
BsrI	ACTGG	2 cut(s)	116, 855
BssAI	RCCGGY	2 cut(s)	101, 264
BssECI	CCNNGG	2 cut(s)	47, 645
BssMI	GATC	3 cut(s)	622, 716, 763
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	2 cut(s)	360, 549
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	4 cut(s)	32, 149, 213, 450
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	5 cut(s)	140, 185, 510, 608, 708
BstDSI	CCRYGG	1 cut(s)	47
BstKTI	GATC	3 cut(s)	625, 719, 766
BstMAI	GTCTC	4 cut(s)	57, 96, 248, 711
BstMBI	GATC	3 cut(s)	622, 716, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 105, 156
BstNI	CCWGG	2 cut(s)	360, 549
BstNSI	RCATGY	2 cut(s)	358, 838
BstSCI	CCNGG	2 cut(s)	358, 547
BstV1I	GCAGC	2 cut(s)	80, 146
BstV2I	GAAGAC	3 cut(s)	69, 231, 729
BstXI	CCANNNNNNTGG	1 cut(s)	646
BsuRI	GGCC	2 cut(s)	45, 190
BtgI	CCRYGG	1 cut(s)	47
BtsIMutI	CAGTG	3 cut(s)	213, 693, 862
Cac8I	GCNNGC	1 cut(s)	266
CaiI	CAGNNNCTG	1 cut(s)	607
Cfr10I	RCCGGY	2 cut(s)	101, 264
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	4 cut(s)	15, 74, 571, 613
CviAII	CATG	5 cut(s)	15, 95, 203, 355, 835
DdeI	CTNAG	5 cut(s)	140, 185, 510, 608, 708
DpnI	GATC	3 cut(s)	624, 718, 765
DpnII	GATC	3 cut(s)	622, 716, 763
DraI	TTTAAA	2 cut(s)	283, 312
Eam1104I	CTCTTC	4 cut(s)	32, 149, 213, 450
EarI	CTCTTC	4 cut(s)	32, 149, 213, 450
Eco130I	CCWWGG	1 cut(s)	645
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	223, 237
Eco88I	CYCGRG	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	358, 547
EcoT14I	CCWWGG	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	5 cut(s)	18, 98, 206, 358, 838
FaqI	GGGAC	2 cut(s)	18, 851
FatI	CATG	5 cut(s)	14, 94, 202, 354, 834
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	2 cut(s)	622, 763
Fnu4HI	GCNGC	3 cut(s)	69, 106, 160
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	3 cut(s)	69, 106, 160
GluI	GCNGC	3 cut(s)	69, 106, 160
GsaI	CCCAGC	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	45, 190
HapII	CCGG	4 cut(s)	56, 102, 265, 582
HgaI	GACGC	4 cut(s)	15, 74, 571, 613
Hin1II	CATG	5 cut(s)	18, 98, 206, 358, 838
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	6 cut(s)	89, 115, 498, 585, 731, 770
HpaII	CCGG	4 cut(s)	56, 102, 265, 582
HphI	GGTGA	1 cut(s)	902
Hpy166II	GTNNAC	2 cut(s)	274, 577
Hpy188I	TCNGA	4 cut(s)	141, 186, 571, 730
Hpy188III	TCNNGA	7 cut(s)	56, 495, 521, 582, 710, 761, 767
Hpy8I	GTNNAC	2 cut(s)	274, 577
HpyAV	CCTTC	2 cut(s)	541, 707
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	304, 559, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 105, 156
HpyF3I	CTNAG	5 cut(s)	140, 185, 510, 608, 708
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	18, 98, 206, 358, 838
Kpn2I	TCCGGA	2 cut(s)	55, 581
KroI	GCCGGC	1 cut(s)	264
KroNI	GCCGGC	1 cut(s)	266
Ksp22I	TGATCA	2 cut(s)	622, 763
Kzo9I	GATC	3 cut(s)	622, 716, 763
LguI	GCTCTTC	1 cut(s)	149
Lsp1109I	GCAGC	2 cut(s)	80, 146
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	624, 718, 765
MboI	GATC	3 cut(s)	622, 716, 763
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	8 cut(s)	278, 294, 313, 487, 658, 682, 823, 893
MlyI	GAGTC	2 cut(s)	98, 579
MmeI	TCCRAC	1 cut(s)	568
MnlI	CCTC	9 cut(s)	35, 95, 135, 180, 214, 422, 505, 528, 672
MroI	TCCGGA	2 cut(s)	55, 581
MroNI	GCCGGC	1 cut(s)	264
MseI	TTAA	4 cut(s)	282, 311, 404, 614
MspI	CCGG	4 cut(s)	56, 102, 265, 582
MspR9I	CCNGG	2 cut(s)	360, 549
MvaI	CCWGG	2 cut(s)	360, 549
MwoI	GCNNNNNNNGC	3 cut(s)	15, 105, 156
NaeI	GCCGGC	1 cut(s)	266
NdeII	GATC	3 cut(s)	622, 716, 763
NgoMIV	GCCGGC	1 cut(s)	264
NlaIII	CATG	5 cut(s)	18, 98, 206, 358, 838
NlaIV	GGNNCC	2 cut(s)	100, 516
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	2 cut(s)	358, 838
PaeR7I	CTCGAG	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	266
PfeI	GAWTC	4 cut(s)	115, 498, 731, 770
PkrI	GCNGC	3 cut(s)	70, 107, 161
PleI	GAGTC	2 cut(s)	97, 579
PpsI	GAGTC	2 cut(s)	97, 579
Psp6I	CCWGG	2 cut(s)	358, 547
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	2 cut(s)	358, 547
PspN4I	GGNNCC	2 cut(s)	100, 516
PspPI	GGNCC	1 cut(s)	44
PspXI	VCTCGAGB	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	607
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	4 cut(s)	282, 311, 404, 614
SatI	GCNGC	3 cut(s)	69, 106, 160
Sau3AI	GATC	3 cut(s)	622, 716, 763
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	98, 579
ScrFI	CCNGG	2 cut(s)	360, 549
SduI	GDGCHC	1 cut(s)	468
Sfr274I	CTCGAG	1 cut(s)	86
SgrAI	CRCCGGYG	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	86
SmiI	ATTTAAAT	1 cut(s)	283
SmlI	CTYRAG	3 cut(s)	74, 86, 519
SmoI	CTYRAG	3 cut(s)	74, 86, 519
Sse9I	AATT	8 cut(s)	278, 294, 313, 487, 658, 682, 823, 893
SsiI	CCGC	4 cut(s)	105, 145, 150, 169
StyD4I	CCNGG	2 cut(s)	358, 547
StyI	CCWWGG	1 cut(s)	645
SwaI	ATTTAAAT	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	697
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	87, 719, 740
TaqII	GACCGA	1 cut(s)	328
TasI	AATT	8 cut(s)	278, 294, 313, 487, 658, 682, 823, 893
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	4 cut(s)	115, 498, 731, 770
Tru1I	TTAA	4 cut(s)	282, 311, 404, 614
Tru9I	TTAA	4 cut(s)	282, 311, 404, 614
TscAI	CASTG	3 cut(s)	220, 700, 862
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	68, 159
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	690
TspGWI	ACGGA	1 cut(s)	896
TspRI	CASTG	3 cut(s)	220, 700, 862
XapI	RAATTY	4 cut(s)	278, 313, 658, 682
XceI	RCATGY	2 cut(s)	358, 838
XhoI	CTCGAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.