Rh2DG072100
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002896
Physical Location & Seq
Forward (+)
5549384 .. 5550405
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG072100.1

Sequence Viewer

Length: 513 bp
ATGGGAAGAGCTCCATGCTGTGACAAATCTAAAGTGAAAAGAGGACCATGGTCTCCAGAAGAAGACGCCACCCTCAAGAACTACCTCCACGAACATGGCACCACTGGCAATTGGATTACTCTCCCAACCAGAGCAGCTTCTCAACCGCCAGGACGAACAGATAATGATGTGAAAAACTATTGGAACACAAAGTTGAAGAAAAAGCTGCTGGCTGTTGCTGCCAGAAACAACATTGTGGCTACTAGACAGACATGTGATCACAACATTGCTCAGTTTTCAGCTCCAGTTCCTCCCAAAATCGAAACCCCTCATGGCCCCGAGACTTCATCTTGTTTAGGTGGCACATTACCATATGCAGCGAACATAAGTTTGGTGCGTAGTTTTGATCAACCAAAGCAAACTTTTGAACCCTGGTGCAAACCGTGCAATCATTCTGATTCAAAACCTATGGAAGTTTCTGATTTTGGCAGCATTAGTGAAAGTAACAGTTTCAGTATTCCACTATCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

170

Amino Acids

18.73

Weight (kDa)

8.75

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 63 2e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 1 cut(s) 146
AcyI GRCGYC 1 cut(s) 66
AflIII ACRYGT 1 cut(s) 251
AgsI TTSAA 3 cut(s) 196, 407, 441
AjnI CCWGG 2 cut(s) 148, 410
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 4 cut(s) 11, 137, 205, 281
AluI AGCT 4 cut(s) 11, 137, 205, 281
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 57, 314
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 5 cut(s) 134, 205, 218, 356, 468
AspS9I GGNCC 2 cut(s) 44, 314
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 5 cut(s) 146, 192, 205, 368, 480
BciT130I CCWGG 2 cut(s) 150, 412
BclI TGATCA 2 cut(s) 256, 385
BcoDI GTCTC 2 cut(s) 57, 314
BfaI CTAG 1 cut(s) 243
BisI GCNGC 5 cut(s) 135, 206, 219, 357, 469
BlsI GCNGC 5 cut(s) 136, 207, 220, 358, 470
Bme1390I CCNGG 2 cut(s) 150, 412
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 2 cut(s) 44, 314
BmiI GGNNCC 2 cut(s) 100, 316
BmrFI CCNGG 2 cut(s) 150, 412
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 2 cut(s) 39, 267
BpuEI CTTGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 47, 410
Bse1I ACTGG 2 cut(s) 109, 284
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 150, 412
BseDI CCNNGG 2 cut(s) 47, 410
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 109, 284
BseXI GCAGC 5 cut(s) 146, 192, 205, 368, 480
BshFI GGCC 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 57, 314
BsnI GGCC 1 cut(s) 315
Bso31I GGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 256, 385
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 146
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 100, 316
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 2 cut(s) 109, 284
BssECI CCNNGG 2 cut(s) 47, 410
BssMI GATC 2 cut(s) 256, 385
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 150, 412
Bst4CI ACNGT 2 cut(s) 423, 488
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 47
BstKTI GATC 2 cut(s) 259, 388
BstMAI GTCTC 2 cut(s) 57, 314
BstMBI GATC 2 cut(s) 256, 385
BstMWI GCNNNNNNNGC 3 cut(s) 105, 218, 423
BstNI CCWGG 2 cut(s) 150, 412
BstNSI RCATGY 1 cut(s) 255
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 148, 410
BstV1I GCAGC 5 cut(s) 146, 192, 205, 368, 480
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 210
Cfr13I GGNCC 2 cut(s) 44, 314
CseI GACGC 1 cut(s) 74
CviAII CATG 5 cut(s) 15, 48, 95, 252, 311
CviJI RGCY 7 cut(s) 11, 137, 205, 212, 239, 281, 315
CviKI_1 RGCY 7 cut(s) 11, 137, 205, 212, 239, 281, 315
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 258, 387
DpnII GATC 2 cut(s) 256, 385
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 148, 410
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 18, 51, 98, 255, 314
FaiI YATR 9 cut(s) 16, 49, 96, 253, 312, 352, 354, 365, 449
FatI CATG 5 cut(s) 14, 47, 94, 251, 310
FauNDI CATATG 1 cut(s) 352
FbaI TGATCA 2 cut(s) 256, 385
Fnu4HI GCNGC 5 cut(s) 135, 206, 219, 357, 469
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 5 cut(s) 135, 206, 219, 357, 469
FspBI CTAG 1 cut(s) 243
GluI GCNGC 5 cut(s) 135, 206, 219, 357, 469
GsuI CTGGAG 2 cut(s) 39, 267
HaeIII GGCC 1 cut(s) 315
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 5 cut(s) 18, 51, 98, 255, 314
HinfI GANTC 1 cut(s) 437
Hpy188I TCNGA 2 cut(s) 436, 460
Hpy188III TCNNGA 2 cut(s) 56, 76
HpyCH4III ACNGT 2 cut(s) 423, 488
HpyCH4V TGCA 3 cut(s) 356, 417, 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 218, 423
HpyF3I CTNAG 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 5 cut(s) 18, 51, 98, 255, 314
Ksp22I TGATCA 2 cut(s) 256, 385
Kzo9I GATC 2 cut(s) 256, 385
LmnI GCTCC 2 cut(s) 16, 286
Lsp1109I GCAGC 5 cut(s) 146, 192, 205, 368, 480
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 20, 482
MalI GATC 2 cut(s) 258, 387
MboI GATC 2 cut(s) 256, 385
MboII GAAGA 4 cut(s) 18, 71, 74, 208
MfeI CAATTG 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 109
MnlI CCTC 5 cut(s) 35, 83, 95, 300, 318
MslI CAYNNNNRTG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 150, 412
MunI CAATTG 1 cut(s) 109
MvaI CCWGG 2 cut(s) 150, 412
MwoI GCNNNNNNNGC 3 cut(s) 105, 218, 423
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 352
NdeII GATC 2 cut(s) 256, 385
NlaIII CATG 5 cut(s) 18, 51, 98, 255, 314
NlaIV GGNNCC 2 cut(s) 100, 316
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 255
PciI ACATGT 1 cut(s) 251
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 5 cut(s) 136, 207, 220, 358, 470
PscI ACATGT 1 cut(s) 251
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 148, 410
PspGI CCWGG 2 cut(s) 148, 410
PspN4I GGNNCC 2 cut(s) 100, 316
PspPI GGNCC 2 cut(s) 44, 314
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 13
SatI GCNGC 5 cut(s) 135, 206, 219, 357, 469
Sau3AI GATC 2 cut(s) 256, 385
Sau96I GGNCC 2 cut(s) 44, 314
ScrFI CCNGG 2 cut(s) 150, 412
SduI GDGCHC 1 cut(s) 13
SetI ASST 7 cut(s) 13, 87, 139, 207, 283, 340, 448
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 109
SsiI CCGC 1 cut(s) 146
SspMI CTAG 1 cut(s) 243
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 148, 410
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 423, 488
TaqI TCGA 1 cut(s) 300
TasI AATT 1 cut(s) 109
TfiI GAWTC 1 cut(s) 437
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 5 cut(s) 134, 205, 218, 356, 468
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 44
XceI RCATGY 1 cut(s) 255
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.