Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Reverse (-)

4272733 .. 4274001

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1062400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGACGCACTCCATGCTGTGACAAAGACAACGTGAAGAGAGGCCCGTGGTCTCCGGAAGAAGACGCAGCTCTCAAGTCCTACCTCGAGTCTCATGGCACCGGCGGCAACTGGATTCTTCTCCCCAAAAAAGCTGGTCTGAGGCGGTGCGGGAAGAGCTGCCGTCTGCGGTGGCTGAACTATCTGAGGCCAGACATCAAACATGGAAGCTTCACTGAAGAGGAAGACAGCATTATCTGCAGCCTCTACAACCAGATGGGAAGCCGATGGTCAGTCATTGCTTCTCACATGCCTGGAAGAACAGACAACGATGTGAAGAACTATTGGAATACCAAATTAAAGAAGAAACTTATGGTTTTGGGAGGAAAGGTAAAGAATATCAGTAGCAAAGAGAGAGAGCCCACGATTACAAACAATGCCATTTTTTCTGGAATCCGAAAAACTGAGGAACCCCAAGACCCTGCCTTCTCAACTTTCCAACCAGCCACATTGCAGACGCTATCCGATGTGAACTCTGGACTCAATGCCTACAACCAGACCCTGAGCTTAAACCCTGATCAGTTATACAGCCCCAAGTTCTTGGGTTTTTCAAATTTCGGTGCAAGTTCAAGGAGGAGTTTCAGCACCACTGTTTCATTGTCTCAGGAAGGATCAAGCGTTTCGGATTCGTCTTCGATTGCTGGGAACGGTTATCTTGATCAGGATTCTTGGTTTTGTATGGATTATGGATATGGTTTGGCTTATGATAATAATGTCAATTACTATGGCATGTGTTTTGAGAAAACAACCAGTGAAGCTGTCCCATCAGGCTGCACGGATTTGGGTGAATTGTTTCAAGCTGAAATTTACAACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

286

Amino Acids

31.8

Weight (kDa)

6.82

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	7.2e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	3.1e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 116	8.2e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	4 cut(s)	105, 145, 150, 169
AclWI	GGATC	1 cut(s)	658
AcsI	RAATTY	2 cut(s)	592, 843
AcuI	CTGAAG	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	591, 609, 836
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	7 cut(s)	71, 134, 159, 210, 546, 797, 839
AluI	AGCT	7 cut(s)	71, 134, 159, 210, 546, 797, 839
Alw26I	GTCTC	3 cut(s)	57, 96, 645
AlwI	GGATC	1 cut(s)	658
AlwNI	CAGNNNCTG	1 cut(s)	541
Ama87I	CYCGRG	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	2 cut(s)	43, 188
ApeKI	GCWGC	4 cut(s)	68, 159, 240, 810
ApoI	RAATTY	2 cut(s)	592, 843
Asp700I	GAANNNNTTC	1 cut(s)	831
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	836
AvaI	CYCGRG	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	3 cut(s)	69, 231, 663
BbvI	GCAGC	4 cut(s)	80, 146, 252, 797
BccI	CCATC	3 cut(s)	250, 261, 811
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	2 cut(s)	556, 697
BcoDI	GTCTC	3 cut(s)	57, 96, 645
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	5 cut(s)	69, 106, 160, 241, 811
BlsI	GCNGC	5 cut(s)	70, 107, 161, 242, 812
Bme1390I	CCNGG	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	100, 450
BmrFI	CCNGG	1 cut(s)	294
BpiI	GAAGAC	3 cut(s)	69, 231, 663
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	116, 789
Bse3DI	GCAATG	2 cut(s)	276, 488
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	47
BseMI	GCAATG	2 cut(s)	276, 488
BseMII	CTCAG	5 cut(s)	131, 176, 435, 533, 656
BseNI	ACTGG	2 cut(s)	116, 789
BseRI	GAGGAG	1 cut(s)	628
BseXI	GCAGC	4 cut(s)	80, 146, 252, 797
BseYI	CCCAGC	1 cut(s)	680
BsgI	GTGCAG	1 cut(s)	796
BshFI	GGCC	2 cut(s)	45, 190
BshNI	GGYRCC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	56, 102
BslFI	GGGAC	2 cut(s)	18, 785
BsmAI	GTCTC	3 cut(s)	57, 96, 645
BsmFI	GGGAC	2 cut(s)	18, 785
BsnI	GGCC	2 cut(s)	45, 190
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	556, 650, 697
BspACI	CCGC	4 cut(s)	105, 145, 150, 169
BspANI	GGCC	2 cut(s)	45, 190
BspCNI	CTCAG	5 cut(s)	132, 177, 436, 534, 655
BspEI	TCCGGA	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	100, 450
BspMAI	CTGCAG	1 cut(s)	242
BspPI	GGATC	1 cut(s)	658
BspQI	GCTCTTC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	276, 488
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	116, 789
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	556, 650, 697
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	631, 689
Bst6I	CTCTTC	3 cut(s)	32, 149, 213
BstAPI	GCANNNNNTGC	2 cut(s)	15, 237
BstDEI	CTNAG	5 cut(s)	140, 185, 444, 542, 642
BstDSI	CCRYGG	1 cut(s)	47
BstKTI	GATC	3 cut(s)	559, 653, 700
BstMAI	GTCTC	3 cut(s)	57, 96, 645
BstMBI	GATC	3 cut(s)	556, 650, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 105, 156, 237
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	2 cut(s)	292, 772
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	4 cut(s)	80, 146, 252, 797
BstV2I	GAAGAC	3 cut(s)	69, 231, 663
BstXI	CCANNNNNNTGG	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	45, 190
BtgI	CCRYGG	1 cut(s)	47
BtsIMutI	CAGTG	3 cut(s)	213, 627, 796
CaiI	CAGNNNCTG	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	3 cut(s)	15, 74, 505
CviAII	CATG	5 cut(s)	15, 95, 203, 289, 769
DdeI	CTNAG	5 cut(s)	140, 185, 444, 542, 642
DpnI	GATC	3 cut(s)	558, 652, 699
DpnII	GATC	3 cut(s)	556, 650, 697
Eam1104I	CTCTTC	3 cut(s)	32, 149, 213
EarI	CTCTTC	3 cut(s)	32, 149, 213
Eco24I	GRGCYC	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	5 cut(s)	18, 98, 206, 292, 772
FaqI	GGGAC	2 cut(s)	18, 785
FatI	CATG	5 cut(s)	14, 94, 202, 288, 768
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	2 cut(s)	556, 697
Fnu4HI	GCNGC	5 cut(s)	69, 106, 160, 241, 811
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	5 cut(s)	69, 106, 160, 241, 811
GluI	GCNGC	5 cut(s)	69, 106, 160, 241, 811
GsaI	CCCAGC	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	45, 190
HapII	CCGG	2 cut(s)	56, 102
HgaI	GACGC	3 cut(s)	15, 74, 505
Hin1II	CATG	5 cut(s)	18, 98, 206, 292, 772
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	6 cut(s)	89, 115, 432, 519, 665, 704
HpaII	CCGG	2 cut(s)	56, 102
HphI	GGTGA	1 cut(s)	836
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	5 cut(s)	141, 186, 437, 505, 664
Hpy188III	TCNNGA	6 cut(s)	56, 429, 516, 644, 695, 701
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	2 cut(s)	475, 641
HpyCH4III	ACNGT	2 cut(s)	631, 689
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	240, 493, 602, 813
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 105, 156, 237
HpyF3I	CTNAG	5 cut(s)	140, 185, 444, 542, 642
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	18, 98, 206, 292, 772
Kpn2I	TCCGGA	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	556, 697
Kzo9I	GATC	3 cut(s)	556, 650, 697
LguI	GCTCTTC	1 cut(s)	149
Lsp1109I	GCAGC	4 cut(s)	80, 146, 252, 797
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	558, 652, 699
MboI	GATC	3 cut(s)	556, 650, 697
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	5 cut(s)	335, 592, 757, 827, 843
MlyI	GAGTC	2 cut(s)	98, 513
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	9 cut(s)	35, 95, 135, 180, 214, 254, 356, 439, 606
MroI	TCCGGA	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	831
MseI	TTAA	2 cut(s)	338, 548
MspI	CCGG	2 cut(s)	56, 102
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	15, 105, 156, 237
NdeII	GATC	3 cut(s)	556, 650, 697
NlaIII	CATG	5 cut(s)	18, 98, 206, 292, 772
NlaIV	GGNNCC	2 cut(s)	100, 450
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	2 cut(s)	292, 772
PaeR7I	CTCGAG	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	4 cut(s)	115, 432, 665, 704
PkrI	GCNGC	5 cut(s)	70, 107, 161, 242, 812
PleI	GAGTC	2 cut(s)	97, 513
PpsI	GAGTC	2 cut(s)	97, 513
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	100, 450
PspPI	GGNCC	1 cut(s)	44
PspXI	VCTCGAGB	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	541
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	338, 548
SatI	GCNGC	5 cut(s)	69, 106, 160, 241, 811
Sau3AI	GATC	3 cut(s)	556, 650, 697
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	98, 513
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	86
SgrAI	CRCCGGYG	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	74, 86
SmoI	CTYRAG	2 cut(s)	74, 86
Sse9I	AATT	5 cut(s)	335, 592, 757, 827, 843
SsiI	CCGC	4 cut(s)	105, 145, 150, 169
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	631, 689
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	87, 674
TasI	AATT	5 cut(s)	335, 592, 757, 827, 843
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	4 cut(s)	115, 432, 665, 704
Tru1I	TTAA	2 cut(s)	338, 548
Tru9I	TTAA	2 cut(s)	338, 548
TscAI	CASTG	3 cut(s)	220, 634, 796
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	68, 159, 240, 810
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	624
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	3 cut(s)	220, 634, 796
XapI	RAATTY	2 cut(s)	592, 843
XceI	RCATGY	2 cut(s)	292, 772
XhoI	CTCGAG	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.