Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Forward (+)

16033850 .. 16035028

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1201500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGAAGAGCTCCATGCTGTGACAAGTCCAGAGTGAAGAAAGGACCCTGGTCACCGGAAGAAGACACCACCCTCAAGAACTACCTCCACAAACATGGCACTGGTGGCAACTGGATTGCTCTACCGACCAAAGCAGGCCTCAATCGTTGCGGTAAGAGTTGTCGTTTGAGATGGCTAAACTATCTTAGGCCTGACATCAAGCGTGGAGGTTTTACTGAGGGAGAAGACAATGTTATTTGCACTCTCCATGGTACCATTGGAACTTCTCAACTTCCAGGAAGAACTGACAATGATATTAAAAACTATTGGAACACCAAGTTGAAGAAAAAACTCTTGGCAACAAACAACATGAATTTGGCTACTAGAGACACTGTTGATACCAACTTGTCACAGTTTTCGGATTCGATTCCGAAAACTGAAACCCTACATGACCAGGGAGCACCATCTTGTTTTGATGGCACATTGCCATATCTAATGGATGTAAGCTCGGGGCAAAGTTTTGATCCCTGCACTCAAATTTCTCCTTCAAACCCTATGGAAGTTAATGGTTTTGAGACTAGAGAAGGCAAGAGTTTCAGCATTATTTCACCATCTCAAGAAGTTTCAAGCCTTCCAACTTCATCTGGTTTGGGTTTGGAGAACAATTACAGCATCTGGTCTGGCAATGAAGGTGTCGATAATGTCAGTGGGGTTCTTATGGACTATGGATTTGAGACTCCTAATGATGATCTTCTGGATGGCTTCGGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

251

Amino Acids

27.44

Weight (kDa)

5.42

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	1.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	352, 516
AfaI	GTAC	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	322, 528, 606
AjnI	CCWGG	3 cut(s)	47, 274, 432
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	2 cut(s)	11, 486
AluI	AGCT	2 cut(s)	11, 486
Alw21I	GWGCWC	2 cut(s)	13, 442
Alw26I	GTCTC	3 cut(s)	360, 548, 707
AlwI	GGATC	1 cut(s)	497
AlwNI	CAGNNNCTG	1 cut(s)	654
Ama87I	CYCGRG	1 cut(s)	487
AoxI	GGCC	2 cut(s)	136, 188
ApoI	RAATTY	2 cut(s)	352, 516
ArsI	GACNNNNNNTTYG	2 cut(s)	692, 724
Asp718I	GGTACC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	45, 579
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	2 cut(s)	69, 231
Bbv12I	GWGCWC	2 cut(s)	13, 442
BccI	CCATC	5 cut(s)	165, 449, 451, 598, 731
BciT130I	CCWGG	3 cut(s)	49, 276, 434
BcoDI	GTCTC	3 cut(s)	360, 548, 707
BfaI	CTAG	2 cut(s)	363, 558
Bme1390I	CCNGG	3 cut(s)	49, 276, 434
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	46, 253
BmrFI	CCNGG	3 cut(s)	49, 276, 434
BmsI	GCATC	1 cut(s)	660
BoxI	GACNNNNGTC	1 cut(s)	49
BpiI	GAAGAC	2 cut(s)	69, 231
BpuEI	CTTGAG	2 cut(s)	59, 579
BsaJI	CCNNGG	3 cut(s)	47, 247, 433
BsaWI	WCCGGW	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	106, 116
Bse3DI	GCAATG	2 cut(s)	461, 670
BseBI	CCWGG	3 cut(s)	49, 276, 434
BseDI	CCNNGG	3 cut(s)	47, 247, 433
BseGI	GGATG	2 cut(s)	484, 742
BseMI	GCAATG	2 cut(s)	461, 670
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	106, 116
BsgI	GTGCAG	1 cut(s)	493
BshFI	GGCC	2 cut(s)	138, 190
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	2 cut(s)	13, 442
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	3 cut(s)	360, 548, 707
BsnI	GGCC	2 cut(s)	138, 190
BsoBI	CYCGRG	1 cut(s)	487
Bsp1286I	GDGCHC	2 cut(s)	13, 442
Bsp143I	GATC	2 cut(s)	502, 727
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	138, 190
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	46, 253
BspPI	GGATC	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	2 cut(s)	461, 670
BsrI	ACTGG	2 cut(s)	106, 116
BssECI	CCNNGG	3 cut(s)	47, 247, 433
BssMI	GATC	2 cut(s)	502, 727
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	3 cut(s)	49, 276, 434
Bst4CI	ACNGT	2 cut(s)	373, 393
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	185, 216
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	484, 742
BstKTI	GATC	2 cut(s)	505, 730
BstMAI	GTCTC	3 cut(s)	360, 548, 707
BstMBI	GATC	2 cut(s)	502, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	3 cut(s)	49, 276, 434
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	47, 274, 432
BstV2I	GAAGAC	2 cut(s)	69, 231
BstXI	CCANNNNNNTGG	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	138, 190
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	484, 742
BtsIMutI	CAGTG	3 cut(s)	99, 369, 691
Cac8I	GCNNGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	654
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	5 cut(s)	15, 95, 248, 349, 428
CviJI	RGCY	8 cut(s)	11, 138, 175, 190, 359, 486, 609, 741
CviKI_1	RGCY	8 cut(s)	11, 138, 175, 190, 359, 486, 609, 741
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	2 cut(s)	185, 216
DpnI	GATC	2 cut(s)	504, 729
DpnII	GATC	2 cut(s)	502, 727
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	247
Eco147I	AGGCCT	2 cut(s)	138, 190
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	487
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	3 cut(s)	47, 274, 432
EcoT14I	CCWWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	5 cut(s)	18, 98, 251, 352, 431
FaiI	YATR	9 cut(s)	16, 96, 249, 350, 429, 469, 536, 698, 705
FatI	CATG	5 cut(s)	14, 94, 247, 348, 427
FokI	GGATG	2 cut(s)	491, 749
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	2 cut(s)	363, 558
HaeIII	GGCC	2 cut(s)	138, 190
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	5 cut(s)	18, 98, 251, 352, 431
HinfI	GANTC	3 cut(s)	401, 406, 715
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	2 cut(s)	45, 579
Hpy188I	TCNGA	2 cut(s)	400, 411
Hpy188III	TCNNGA	4 cut(s)	30, 76, 596, 734
HpyAV	CCTTC	4 cut(s)	534, 557, 620, 662
HpyCH4III	ACNGT	2 cut(s)	373, 393
HpyCH4V	TGCA	2 cut(s)	240, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	185, 216
Hsp92II	CATG	5 cut(s)	18, 98, 251, 352, 431
KpnI	GGTACC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	502, 727
LmnI	GCTCC	2 cut(s)	16, 437
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	2 cut(s)	363, 558
MaeIII	GTNAC	3 cut(s)	20, 51, 387
MalI	GATC	2 cut(s)	504, 729
MboI	GATC	2 cut(s)	502, 727
MboII	GAAGA	8 cut(s)	18, 49, 71, 74, 236, 291, 334, 722
MhlI	GDGCHC	2 cut(s)	13, 442
MluCI	AATT	3 cut(s)	352, 516, 643
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	638
MnlI	CCTC	5 cut(s)	83, 95, 149, 200, 211
MseI	TTAA	3 cut(s)	297, 543, 751
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	3 cut(s)	49, 276, 434
MvaI	CCWGG	3 cut(s)	49, 276, 434
MwoI	GCNNNNNNNGC	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	2 cut(s)	502, 727
NlaIII	CATG	5 cut(s)	18, 98, 251, 352, 431
NlaIV	GGNNCC	2 cut(s)	46, 253
NmuCI	GTSAC	3 cut(s)	20, 51, 387
PceI	AGGCCT	2 cut(s)	138, 190
PfeI	GAWTC	2 cut(s)	401, 406
PfoI	TCCNGGA	1 cut(s)	274
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PpuMI	RGGWCCY	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	3 cut(s)	47, 274, 432
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	3 cut(s)	47, 274, 432
PspN4I	GGNNCC	2 cut(s)	46, 253
PspPI	GGNCC	1 cut(s)	44
PspPPI	RGGWCCY	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	654
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	297, 543, 751
Sau3AI	GATC	2 cut(s)	502, 727
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	3 cut(s)	49, 276, 434
SduI	GDGCHC	2 cut(s)	13, 442
SetI	ASST	5 cut(s)	13, 87, 211, 488, 673
SfaNI	GCATC	1 cut(s)	660
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	74, 594
SmoI	CTYRAG	2 cut(s)	74, 594
Sse9I	AATT	3 cut(s)	352, 516, 643
SseBI	AGGCCT	2 cut(s)	138, 190
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	2 cut(s)	363, 558
SstI	GAGCTC	1 cut(s)	13
StuI	AGGCCT	2 cut(s)	138, 190
StyD4I	CCNGG	3 cut(s)	47, 274, 432
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	373, 393
TaqI	TCGA	2 cut(s)	404, 675
TasI	AATT	3 cut(s)	352, 516, 643
TfiI	GAWTC	2 cut(s)	401, 406
Tru1I	TTAA	3 cut(s)	297, 543, 751
Tru9I	TTAA	3 cut(s)	297, 543, 751
TscAI	CASTG	3 cut(s)	106, 376, 691
TseFI	GTSAC	3 cut(s)	20, 51, 387
Tsp45I	GTSAC	3 cut(s)	20, 51, 387
TspDTI	ATGAA	3 cut(s)	365, 609, 681
TspRI	CASTG	3 cut(s)	106, 376, 691
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	352, 516
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XspI	CTAG	2 cut(s)	363, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.