Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Reverse (-)

1978613 .. 1979605

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00158630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGAAGAGCTCCATGTTGTGACAAAGCTAGTGTCAAAAGAGGGCAATGGTCTCCTGAGGAAGATGAAGCTCTCAAGACTTACCTTGAGACTCATGGAACTGGTGGCAATTGGATTCATCTGCCTCAAAAAGCTGGTAAAGGCTTAGGAGATGTGGGAAGAGCTGCCCGTCTGCGGTGGTTGAACTATCTGAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAGGAGGACAACATTATCTGTAACCTCTACACTCAAATGGGAAGCCGATGGTCATACATAGCTGCTCAAATGCCTGGAAGAACAGACAATGATGTGAAGAACTATTGGAACACCAAATTGAAGAAGAGTTCTGTTTCAATGTCTCAAGATGGTTCGAGTGTTTCAGATTCGTCTTCAATGCTGCTGCAGTTTGACAATGGTTTACTACATGGAAATAGCTTCATAAATGAGGATGCTGCTGGGATATCAATGGATTTTGGATTTGGAGGATTGCCTTATGATGTTGTCAATCAGATGTGGTTTGGAGAAAAAGCCAATGAAGTTGTTCACCCCCACTTGCTCCACAAGTTTGGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

194

Amino Acids

21.67

Weight (kDa)

6.15

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 64	2.8e-06	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 78	3.5e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 113	3.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 117	1.9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	4 cut(s)	184, 346, 363, 402
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	7 cut(s)	11, 29, 71, 134, 164, 287, 444
AluI	AGCT	7 cut(s)	11, 29, 71, 134, 164, 287, 444
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	3 cut(s)	57, 83, 372
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	5 cut(s)	164, 287, 406, 409, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
Asp700I	GAANNNNTTC	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	545
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	5 cut(s)	151, 274, 393, 396, 448
BccI	CCATC	3 cut(s)	267, 368, 573
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	3 cut(s)	57, 83, 372
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	410
BisI	GCNGC	5 cut(s)	165, 288, 407, 410, 462
BlsI	GCNGC	5 cut(s)	166, 289, 408, 411, 463
Bme1390I	CCNGG	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	145
BpuEI	CTTGAG	3 cut(s)	59, 107, 354
BsaI	GGTCTC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	463, 584
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	48, 182
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	5 cut(s)	151, 274, 393, 396, 448
BseYI	CCCAGC	1 cut(s)	464
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	3 cut(s)	57, 83, 372
BsnI	GGCC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	49, 183
BspMAI	CTGCAG	1 cut(s)	414
BspQI	GCTCTTC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	300
Bst6I	CTCTTC	3 cut(s)	154, 219, 344
BstDEI	CTNAG	3 cut(s)	57, 145, 191
BstF5I	GGATG	2 cut(s)	463, 584
BstMAI	GTCTC	3 cut(s)	57, 83, 372
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	410
BstV1I	GCAGC	5 cut(s)	151, 274, 393, 396, 448
BstV2I	GAAGAC	1 cut(s)	390
BstXI	CCANNNNNNTGG	1 cut(s)	575
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	463, 584
BtsIMutI	CAGTG	1 cut(s)	219
CviAII	CATG	4 cut(s)	15, 95, 209, 434
DdeI	CTNAG	3 cut(s)	57, 145, 191
Eam1104I	CTCTTC	3 cut(s)	154, 219, 344
EarI	CTCTTC	3 cut(s)	154, 219, 344
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	4 cut(s)	18, 98, 212, 437
FaiI	YATR	8 cut(s)	16, 96, 210, 280, 284, 435, 449, 504
FatI	CATG	4 cut(s)	14, 94, 208, 433
Fnu4HI	GCNGC	5 cut(s)	165, 288, 407, 410, 462
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	5 cut(s)	165, 288, 407, 410, 462
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	5 cut(s)	165, 288, 407, 410, 462
GsaI	CCCAGC	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	4 cut(s)	18, 98, 212, 437
HinfI	GANTC	3 cut(s)	91, 115, 392
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	2 cut(s)	428, 553
Hpy188I	TCNGA	3 cut(s)	192, 391, 519
Hpy188III	TCNNGA	3 cut(s)	56, 76, 371
Hpy8I	GTNNAC	2 cut(s)	428, 553
HpyCH4V	TGCA	1 cut(s)	412
HpyF3I	CTNAG	3 cut(s)	57, 145, 191
Hsp92II	CATG	4 cut(s)	18, 98, 212, 437
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	16, 570
LpnPI	CCDG	7 cut(s)	69, 87, 120, 210, 285, 312, 450
Lsp1109I	GCAGC	5 cut(s)	151, 274, 393, 396, 448
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	20, 245
MboII	GAAGA	9 cut(s)	18, 74, 171, 236, 315, 334, 358, 361, 390
MfeI	CAATTG	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	2 cut(s)	109, 341
MlyI	GAGTC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	549
MslI	CAYNNNNRTG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	300
MunI	CAATTG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	300
NlaIII	CATG	4 cut(s)	18, 98, 212, 437
NmuCI	GTSAC	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	115, 392
PkrI	GCNGC	5 cut(s)	166, 289, 408, 411, 463
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	154
SatI	GCNGC	5 cut(s)	165, 288, 407, 410, 462
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	9 cut(s)	13, 31, 73, 87, 136, 166, 252, 289, 446
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	3 cut(s)	74, 86, 369
SmoI	CTYRAG	3 cut(s)	74, 86, 369
Sse9I	AATT	2 cut(s)	109, 341
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	298
TaqI	TCGA	1 cut(s)	380
TasI	AATT	2 cut(s)	109, 341
TfiI	GAWTC	2 cut(s)	115, 392
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	5 cut(s)	164, 287, 406, 409, 461
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	81, 107, 436, 558
TspRI	CASTG	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.