RLG00000016308
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002896
Physical Location & Seq
Forward (+)
5580660 .. 5582296
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016308

Sequence Viewer

Length: 720 bp
ATGTTATCTGCACTCTCTTTAGAAGCATTGGAAGCAGGCAAGTGGTCTGTCATAGCTTCTCAACTGGCAGGACGAACAGATAATGATGTGAAAAACTATTGGAACACAAAGTTGAAGAAAAAGCTGCTGGCGGTTGCTGCAAGAAAAAACATTGTGGCTACTAGACAGACATGTGATCACAACATTGCTCAGTTTTCAGCTCCAGTTCCTCCCAAAATCGAAACCCCTCATGGCCCCGAGACTTCATCTTGTTTAGGTGGCACATTACCATATGCAGTGAACATAAGTTTGGTGCATAGTTTTGATCAACCAAAGCAAACTTTTGAACCCTGGTGCAATCATTCTGATTCAAAGCCTGTGGAAGTTTCTGATTTTGGCAGCACTAGTGAAAGTAACAGTTTCAGTATTCCACTATCTCATCAGGAAGTTTCAAGTCTTCCAAGTTCATCCAGTTTGGCTCAGCTGGGTCAGTACCATTGCTCCTTGTGGTCTGGATATGAAGAGGACGAAGCCATGCTTCCCCGTCAGAGACGAGAACAAGCACGAAAAGCCTCCTCCGTCTCCGCCTGCGGCTTCCAGAAGCTCGGCCGATTCGATGCCGTCGATTTGTTCAACGGATCTCTGGTCGTCGTCGCCGGGGACTCTCAGGCGAGGCTGGTCGCGGTCTTCTGCTCAGTCTGGTTTTGGATTCGGAGTGGATGGACAAGGTTGAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

240

Amino Acids

26.33

Weight (kDa)

8.53

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 11 - 36 1.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 662
AciI CCGC 4 cut(s) 131, 564, 570, 662
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 1 cut(s) 586
AfaI GTAC 1 cut(s) 473
AflIII ACRYGT 1 cut(s) 170
AgsI TTSAA 5 cut(s) 115, 326, 351, 432, 613
AhlI ACTAGT 1 cut(s) 383
AjnI CCWGG 1 cut(s) 329
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 5 cut(s) 56, 124, 200, 463, 583
AluI AGCT 5 cut(s) 56, 124, 200, 463, 583
Alw26I GTCTC 3 cut(s) 233, 523, 565
AlwI GGATC 1 cut(s) 625
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 232, 586
ApeKI GCWGC 3 cut(s) 124, 137, 378
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 637
AvaI CYCGRG 1 cut(s) 236
BbsI GAAGAC 2 cut(s) 428, 658
BbvI GCAGC 3 cut(s) 111, 124, 390
BccI CCATC 1 cut(s) 693
BceAI ACGGC 1 cut(s) 584
BciT130I CCWGG 1 cut(s) 331
BclI TGATCA 2 cut(s) 175, 304
BcnI CCSGG 1 cut(s) 637
BcoDI GTCTC 3 cut(s) 233, 523, 565
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 2 cut(s) 162, 384
BisI GCNGC 4 cut(s) 125, 138, 379, 571
BlpI GCTNAGC 1 cut(s) 459
BlsI GCNGC 4 cut(s) 126, 139, 380, 572
Bme1390I CCNGG 2 cut(s) 331, 637
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 2 cut(s) 331, 637
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 2 cut(s) 428, 658
BpmI CTGGAG 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 637
BsaJI CCNNGG 2 cut(s) 329, 636
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bse1I ACTGG 3 cut(s) 69, 203, 450
Bse3DI GCAATG 2 cut(s) 183, 475
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 329, 636
BseGI GGATG 2 cut(s) 446, 704
BseMI GCAATG 2 cut(s) 183, 475
BseMII CTCAG 4 cut(s) 203, 473, 659, 687
BseNI ACTGG 3 cut(s) 69, 203, 450
BseRI GAGGAG 1 cut(s) 544
BseX3I CGGCCG 1 cut(s) 586
BseXI GCAGC 3 cut(s) 111, 124, 390
BseYI CCCAGC 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 662
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 2 cut(s) 234, 588
BsiEI CGRYCG 1 cut(s) 589
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 636
BslFI GGGAC 1 cut(s) 653
BsmAI GTCTC 3 cut(s) 233, 523, 565
BsmBI CGTCTC 2 cut(s) 523, 565
BsmFI GGGAC 1 cut(s) 653
BsnI GGCC 2 cut(s) 234, 588
BsoBI CYCGRG 1 cut(s) 236
Bsp143I GATC 3 cut(s) 175, 304, 617
Bsp1720I GCTNAGC 1 cut(s) 459
BspACI CCGC 4 cut(s) 131, 564, 570, 662
BspANI GGCC 2 cut(s) 234, 588
BspCNI CTCAG 4 cut(s) 202, 472, 658, 686
BspFNI CGCG 1 cut(s) 662
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 625
BsrDI GCAATG 2 cut(s) 183, 475
BsrI ACTGG 3 cut(s) 69, 203, 450
BssECI CCNNGG 2 cut(s) 329, 636
BssMI GATC 3 cut(s) 175, 304, 617
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 37, 129, 568
BstDEI CTNAG 4 cut(s) 189, 459, 645, 673
BstF5I GGATG 2 cut(s) 446, 704
BstFNI CGCG 1 cut(s) 662
BstKTI GATC 3 cut(s) 178, 307, 620
BstMAI GTCTC 3 cut(s) 233, 523, 565
BstMBI GATC 3 cut(s) 175, 304, 617
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 3 cut(s) 32, 137, 548
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 329, 635
BstUI CGCG 1 cut(s) 662
BstV1I GCAGC 3 cut(s) 111, 124, 390
BstV2I GAAGAC 2 cut(s) 428, 658
BstX2I RGATCY 1 cut(s) 617
BstYI RGATCY 1 cut(s) 617
BstZI CGGCCG 1 cut(s) 586
BsuRI GGCC 2 cut(s) 234, 588
BtsCI GGATG 2 cut(s) 446, 704
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 3 cut(s) 37, 129, 568
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 472
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 3 cut(s) 171, 230, 514
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 4 cut(s) 189, 459, 645, 673
DpnI GATC 3 cut(s) 177, 306, 619
DpnII GATC 3 cut(s) 175, 304, 617
EaeI YGGCCR 1 cut(s) 586
EagI CGGCCG 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
EciI GGCGGA 1 cut(s) 553
EclXI CGGCCG 1 cut(s) 586
Eco52I CGGCCG 1 cut(s) 586
Eco88I CYCGRG 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 329
Esp3I CGTCTC 2 cut(s) 523, 565
FaeI CATG 3 cut(s) 174, 233, 517
FaiI YATR 9 cut(s) 53, 172, 231, 271, 273, 284, 297, 498, 515
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 1 cut(s) 653
FatI CATG 3 cut(s) 170, 229, 513
FauNDI CATATG 1 cut(s) 271
FbaI TGATCA 2 cut(s) 175, 304
Fnu4HI GCNGC 4 cut(s) 125, 138, 379, 571
FokI GGATG 2 cut(s) 433, 711
Fsp4HI GCNGC 4 cut(s) 125, 138, 379, 571
FspBI CTAG 2 cut(s) 162, 384
GluI GCNGC 4 cut(s) 125, 138, 379, 571
GsaI CCCAGC 1 cut(s) 467
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 234, 588
HapII CCGG 1 cut(s) 636
Hin1II CATG 3 cut(s) 174, 233, 517
HinfI GANTC 4 cut(s) 347, 591, 641, 688
HpaII CCGG 1 cut(s) 636
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 4 cut(s) 346, 370, 528, 693
Hpy188III TCNNGA 3 cut(s) 422, 492, 577
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 3 cut(s) 605, 632, 635
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 5 cut(s) 11, 140, 275, 295, 336
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 137, 548
HpyF3I CTNAG 4 cut(s) 189, 459, 645, 673
Hsp92II CATG 3 cut(s) 174, 233, 517
Ksp22I TGATCA 2 cut(s) 175, 304
Kzo9I GATC 3 cut(s) 175, 304, 617
LmnI GCTCC 2 cut(s) 205, 485
Lsp1109I GCAGC 3 cut(s) 111, 124, 390
LweI GCATC 1 cut(s) 586
MaeI CTAG 2 cut(s) 162, 384
MaeIII GTNAC 1 cut(s) 392
MalI GATC 3 cut(s) 177, 306, 619
MboI GATC 3 cut(s) 175, 304, 617
MboII GAAGA 4 cut(s) 127, 428, 512, 658
MflI RGATCY 1 cut(s) 617
MlyI GAGTC 1 cut(s) 635
MnlI CCTC 6 cut(s) 219, 237, 496, 562, 565, 645
MspA1I CMGCKG 1 cut(s) 463
MspI CCGG 1 cut(s) 636
MspR9I CCNGG 2 cut(s) 331, 637
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 1 cut(s) 662
MwoI GCNNNNNNNGC 3 cut(s) 32, 137, 548
NciI CCSGG 1 cut(s) 637
NdeI CATATG 1 cut(s) 271
NdeII GATC 3 cut(s) 175, 304, 617
NlaIII CATG 3 cut(s) 174, 233, 517
NlaIV GGNNCC 1 cut(s) 235
NmeAIII GCCGAG 1 cut(s) 564
NspI RCATGY 1 cut(s) 174
PciI ACATGT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 2 cut(s) 591, 600
PfeI GAWTC 3 cut(s) 347, 591, 688
PkrI GCNGC 4 cut(s) 126, 139, 380, 572
PleI GAGTC 1 cut(s) 635
PpsI GAGTC 1 cut(s) 635
PscI ACATGT 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 463
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 233
PsuI RGATCY 1 cut(s) 617
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SatI GCNGC 4 cut(s) 125, 138, 379, 571
Sau3AI GATC 3 cut(s) 175, 304, 617
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 2 cut(s) 331, 637
SetI ASST 7 cut(s) 58, 126, 202, 259, 465, 585, 710
SfaNI GCATC 1 cut(s) 586
SpeI ACTAGT 1 cut(s) 383
SsiI CCGC 4 cut(s) 131, 564, 570, 662
SspMI CTAG 2 cut(s) 162, 384
StyD4I CCNGG 2 cut(s) 329, 635
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 3 cut(s) 219, 594, 603
TauI GCSGC 1 cut(s) 573
TfiI GAWTC 3 cut(s) 347, 591, 688
TscAI CASTG 1 cut(s) 282
TseI GCWGC 3 cut(s) 124, 137, 378
TspDTI ATGAA 3 cut(s) 234, 435, 513
TspGWI ACGGA 2 cut(s) 547, 630
TspRI CASTG 1 cut(s) 282
XceI RCATGY 1 cut(s) 174
XspI CTAG 2 cut(s) 162, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.