Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Reverse (-)

6031793 .. 6032915

Gene Structure 1123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1074700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGACGCACTCCATGCTGTGACAAAGAGAACGTGAAGAGAGGTCCGTGGTCTCCGGAAGAAGACGCAGCTCTCAAGTCCTACCTCCAGTCTCATGGCAGTGATGGCACCGCCAGCAATTGGATTCATCTCCCCAAAAAAGCTGGCCTGAGGCGGTGCGGGAAGAGCTGCCGTCTGCGGTGGCTGAACTATCTGAGGCCAGACATCAAACACGGTGGCTTCACTGAGGAGGAGGACAGCATTATCTGCAACCTCTACAACCAGATGGGAAGCCGGCAAGTTTTCAATTATTTTCTAACTTATTTGCATTTTTTAAATTCCCCCAATTTTTTAAGATGGTCAGTCATTGCTTCTTACATGCCTGGAAGAACAGACAACGATGTGAAGAACTACTGGAACACCAAATTAAAGAAGAAGCTTTTGGGAGGAAAGATAAAGAATATCAGCAGCAAAGAGCCCACAATTGCAAACAATGCCAATTTTTTTGGAATCCCAGAAGCCGAGAAACCCCAAGACTCTGCCTTTTCGACGTCCGAACCCCAAGTTCCATCCACATTGCAGATGCTATATGATGTGAATTCTGGACTTAGTGCAGATAACCAGACCATGAGCTTAAACCCTGATCAGTTATACAACCCCAAGCTCTCGGGTTTTTCGGATTTGGGTGCAAGGTCAAGGAGGAATTACAGCACAACTGTTTCATTGTCTCAGGAGGGATCAAGCATTTCGGATACGTCTTCCATGGCTGGGAATCTTTATCTTGATCAGGATTCTGGATTTTTGATGGATTATGGATTTGGTGTGGCTTATGATAATAATGTCAACCATTATGGCATGTCCTTTGGAGACAAAACCAGTGAAGTTGGTCCAACTGGATGCACAGATTTTGGTGATTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

301

Amino Acids

33.51

Weight (kDa)

6.52

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 65	2.2e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 79	8.2e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 134	7.1e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	4 cut(s)	111, 154, 159, 178
AclWI	GGATC	1 cut(s)	724
AcsI	RAATTY	2 cut(s)	316, 577
AcyI	GRCGYC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	120, 747
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	6 cut(s)	71, 143, 168, 418, 612, 643
AluI	AGCT	6 cut(s)	71, 143, 168, 418, 612, 643
Alw26I	GTCTC	4 cut(s)	57, 96, 711, 840
AlwI	GGATC	1 cut(s)	724
Ama87I	CYCGRG	1 cut(s)	646
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	2 cut(s)	145, 197
ApeKI	GCWGC	3 cut(s)	68, 168, 447
ApoI	RAATTY	2 cut(s)	316, 577
AspS9I	GGNCC	2 cut(s)	44, 866
AsuHPI	GGTGA	1 cut(s)	902
AvaI	CYCGRG	1 cut(s)	646
AvaII	GGWCC	2 cut(s)	44, 866
AxyI	CCTNAGG	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	69, 729
BbvI	GCAGC	3 cut(s)	80, 155, 459
BccI	CCATC	5 cut(s)	98, 259, 330, 556, 778
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	363
BciVI	GTATCC	1 cut(s)	724
BclI	TGATCA	2 cut(s)	622, 763
BcoDI	GTCTC	4 cut(s)	57, 96, 711, 840
BfuI	GTATCC	1 cut(s)	724
BisI	GCNGC	3 cut(s)	69, 169, 448
BlsI	GCNGC	3 cut(s)	70, 170, 449
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	2 cut(s)	44, 866
BmeT110I	CYCGRG	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	44, 866
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	552, 866
BpiI	GAAGAC	2 cut(s)	69, 729
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	530
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	47, 741
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 747
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	4 cut(s)	88, 398, 855, 877
Bse21I	CCTNAGG	1 cut(s)	149
Bse3DI	GCAATG	2 cut(s)	345, 554
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	47, 741
BseGI	GGATG	2 cut(s)	548, 881
BseLI	CCNNNNNNNGG	2 cut(s)	120, 747
BseMI	GCAATG	2 cut(s)	345, 554
BseMII	CTCAG	4 cut(s)	140, 185, 216, 722
BseNI	ACTGG	4 cut(s)	88, 398, 855, 877
BseRI	GAGGAG	2 cut(s)	242, 245
BseXI	GCAGC	3 cut(s)	80, 155, 459
BseYI	CCCAGC	1 cut(s)	746
BsgI	GTGCAG	1 cut(s)	612
BshFI	GGCC	2 cut(s)	147, 199
BshNI	GGYRCC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	646
BsiSI	CCGG	2 cut(s)	56, 274
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	120, 747
BsmAI	GTCTC	4 cut(s)	57, 96, 711, 840
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	147, 199
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	622, 716, 763
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	4 cut(s)	111, 154, 159, 178
BspANI	GGCC	2 cut(s)	147, 199
BspCNI	CTCAG	4 cut(s)	141, 186, 217, 721
BspEI	TCCGGA	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	724
BspQI	GCTCTTC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	345, 554
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	4 cut(s)	88, 398, 855, 877
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	47, 741
BssMI	GATC	3 cut(s)	622, 716, 763
BssNI	GRCGYC	1 cut(s)	530
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	215, 697
Bst6I	CTCTTC	2 cut(s)	32, 158
BstACI	GRCGYC	1 cut(s)	530
BstAPI	GCANNNNNTGC	3 cut(s)	15, 246, 473
BstC8I	GCNNGC	3 cut(s)	115, 145, 275
BstDEI	CTNAG	5 cut(s)	149, 194, 225, 587, 708
BstDSI	CCRYGG	2 cut(s)	47, 741
BstF5I	GGATG	2 cut(s)	548, 881
BstKTI	GATC	3 cut(s)	625, 719, 766
BstMAI	GTCTC	4 cut(s)	57, 96, 711, 840
BstMBI	GATC	3 cut(s)	622, 716, 763
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 105, 114, 165, 246, 473
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	2 cut(s)	361, 838
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	3 cut(s)	80, 155, 459
BstV2I	GAAGAC	2 cut(s)	69, 729
BstXI	CCANNNNNNTGG	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	2 cut(s)	147, 199
BtgI	CCRYGG	2 cut(s)	47, 741
BtsCI	GGATG	2 cut(s)	548, 881
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	3 cut(s)	106, 222, 862
Cac8I	GCNNGC	3 cut(s)	115, 145, 275
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	44, 866
CseI	GACGC	2 cut(s)	15, 74
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	6 cut(s)	15, 95, 358, 607, 742, 835
DdeI	CTNAG	5 cut(s)	149, 194, 225, 587, 708
DpnI	GATC	3 cut(s)	624, 718, 765
DpnII	GATC	3 cut(s)	622, 716, 763
DraI	TTTAAA	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	32, 158
EarI	CTCTTC	2 cut(s)	32, 158
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	44, 866
Eco81I	CCTNAGG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	6 cut(s)	18, 98, 361, 610, 745, 838
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	6 cut(s)	14, 94, 357, 606, 741, 834
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	2 cut(s)	622, 763
Fnu4HI	GCNGC	3 cut(s)	69, 169, 448
FokI	GGATG	2 cut(s)	535, 888
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	3 cut(s)	69, 169, 448
GluI	GCNGC	3 cut(s)	69, 169, 448
GsaI	CCCAGC	1 cut(s)	750
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	147, 199
HapII	CCGG	2 cut(s)	56, 274
HgaI	GACGC	2 cut(s)	15, 74
Hin1I	GRCGYC	1 cut(s)	530
Hin1II	CATG	6 cut(s)	18, 98, 361, 610, 745, 838
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	5 cut(s)	124, 489, 515, 751, 770
HpaII	CCGG	2 cut(s)	56, 274
HphI	GGTGA	1 cut(s)	902
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	4 cut(s)	195, 535, 658, 730
Hpy188III	TCNNGA	6 cut(s)	56, 582, 710, 761, 767, 774
Hpy8I	GTNNAC	1 cut(s)	823
Hpy99I	CGWCG	1 cut(s)	532
HpyCH4III	ACNGT	2 cut(s)	215, 697
HpyCH4IV	ACGT	3 cut(s)	33, 530, 734
HpyCH4V	TGCA	7 cut(s)	249, 307, 467, 559, 593, 668, 879
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 105, 114, 165, 246, 473
HpyF3I	CTNAG	5 cut(s)	149, 194, 225, 587, 708
HpySE526I	ACGT	3 cut(s)	33, 530, 734
Hsp92I	GRCGYC	1 cut(s)	530
Hsp92II	CATG	6 cut(s)	18, 98, 361, 610, 745, 838
Kpn2I	TCCGGA	1 cut(s)	55
KroI	GCCGGC	1 cut(s)	273
KroNI	GCCGGC	1 cut(s)	275
Ksp22I	TGATCA	2 cut(s)	622, 763
Kzo9I	GATC	3 cut(s)	622, 716, 763
LguI	GCTCTTC	1 cut(s)	158
Lsp1109I	GCAGC	3 cut(s)	80, 155, 459
LweI	GCATC	2 cut(s)	552, 866
MaeII	ACGT	3 cut(s)	33, 530, 734
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	624, 718, 765
MboI	GATC	3 cut(s)	622, 716, 763
MboII	GAAGA	8 cut(s)	49, 71, 74, 175, 378, 397, 424, 729
MfeI	CAATTG	2 cut(s)	118, 462
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	9 cut(s)	118, 286, 316, 325, 404, 462, 478, 577, 682
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	893
MroI	TCCGGA	1 cut(s)	55
MroNI	GCCGGC	1 cut(s)	273
MseI	TTAA	4 cut(s)	314, 332, 407, 614
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	2 cut(s)	56, 274
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	2 cut(s)	118, 462
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	6 cut(s)	15, 105, 114, 165, 246, 473
NaeI	GCCGGC	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	3 cut(s)	622, 716, 763
NgoMIV	GCCGGC	1 cut(s)	273
NlaIII	CATG	6 cut(s)	18, 98, 361, 610, 745, 838
NlaIV	GGNNCC	1 cut(s)	109
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	2 cut(s)	361, 838
PciSI	GCTCTTC	1 cut(s)	158
PdiI	GCCGGC	1 cut(s)	275
PfeI	GAWTC	4 cut(s)	124, 489, 751, 770
PflMI	CCANNNNNTGG	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	70, 170, 449
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	2 cut(s)	44, 866
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	4 cut(s)	314, 332, 407, 614
SatI	GCNGC	3 cut(s)	69, 169, 448
Sau3AI	GATC	3 cut(s)	622, 716, 763
Sau96I	GGNCC	2 cut(s)	44, 866
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	552, 866
SinI	GGWCC	2 cut(s)	44, 866
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	9 cut(s)	118, 286, 316, 325, 404, 462, 478, 577, 682
SsiI	CCGC	4 cut(s)	111, 154, 159, 178
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	2 cut(s)	215, 697
TaiI	ACGT	3 cut(s)	36, 533, 737
TaqI	TCGA	1 cut(s)	527
TasI	AATT	9 cut(s)	118, 286, 316, 325, 404, 462, 478, 577, 682
TfiI	GAWTC	4 cut(s)	124, 489, 751, 770
Tru1I	TTAA	4 cut(s)	314, 332, 407, 614
Tru9I	TTAA	4 cut(s)	314, 332, 407, 614
TscAI	CASTG	3 cut(s)	106, 229, 862
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	68, 168, 447
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	116, 690
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	106, 229, 862
Van91I	CCANNNNNTGG	1 cut(s)	120
VpaK11BI	GGWCC	2 cut(s)	44, 866
XapI	RAATTY	2 cut(s)	316, 577
XceI	RCATGY	2 cut(s)	361, 838
ZraI	GACGTC	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.