Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Forward (+)

67021166 .. 67022171

Gene Structure 1006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG493400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGAAGAGCTCCATGTTGTGACAAAGCTAGTGTCAAAAGGGGGCAATGGTCTCCTGAGGAAGATGAAGCTCTCAAGACTTACCTTGAGACTCATGGAACTGGTGGCAATTGGATTCATCTGCCTCAAAAAGCTGGTAAAGTTTATCAAAGGGTCTTTCTAGTTTTGTTCATTATGTTAACTAATTTCCACAATATGAGTTTGTTTCTAAAATTTGGAACACCCCCACCAAAAAAAAAAATTCATGTAGGGCTTAGGAGATGTGGGAAGAGCTGCCGTCTGCGGTGGTTGAACTATCTGAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAGGAGGACAACATTATCTGTAACCTCTACACTCAAATGGGAAGCCGATGGTCATACATAGCTGCTCAAATGCCTGGAAGAACAGACAATGATGTGAAGAACTATTGGAACACCAAATTGAAGAAGAGGTTTTTTAGCAAAAACCCAAATGCCTCCTCACTCACACTGCCTTGTGTTCCAAAACTTGAAACCAATGATGAGTTTCAGACCCAAATACCTCCCACATTGATGTTATCTGATTATAATTCTGGATTGAATGCCTATGATCAAAGTTTGAGCTTAAAGCCAAATCCATTACACAACTCCAAGCTCACGGGCTTATCACAATTTGGTGCAAGTTCTGTTTCAATGTCTCAAGATGGTTCTAGTGTTTCAGATTCGTCTTCAATTGCTGCAGTTGAAAATGGTTTACTACATGGAAATAGCTTCATAAATGAGGATGCTGCTGGGATACCAATGGATTTTGGATTTGGAGGATTGCCTTATGATGTTGTCAATCAGATGTGGTTTGGAGAAAAAGCCAATGAAGTTGTTCACCCCACTTGCTCCACAGGTTTGGATGGTGATTTCTTTTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

304

Amino Acids

33.93

Weight (kDa)

8.06

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	17 - 114	1.4e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	107 - 149	6.4e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	109 - 153	5.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AciI	CCGC	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	212, 240
AcuI	CTGAAG	1 cut(s)	351
AgsI	TTSAA	7 cut(s)	292, 454, 521, 589, 681, 720, 734
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	9 cut(s)	11, 29, 71, 134, 273, 395, 612, 643, 759
AluI	AGCT	9 cut(s)	11, 29, 71, 134, 273, 395, 612, 643, 759
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	3 cut(s)	57, 83, 690
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	4 cut(s)	273, 395, 725, 776
ApoI	RAATTY	2 cut(s)	212, 240
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
Asp700I	GAANNNNTTC	1 cut(s)	864
AsuHPI	GGTGA	2 cut(s)	860, 908
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	260, 382, 712, 763
BccI	CCATC	3 cut(s)	375, 686, 887
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	777
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	3 cut(s)	57, 83, 690
BfaI	CTAG	3 cut(s)	30, 161, 699
BfmI	CTRYAG	1 cut(s)	726
BfuI	GTATCC	1 cut(s)	777
BisI	GCNGC	4 cut(s)	274, 396, 726, 777
BlsI	GCNGC	4 cut(s)	275, 397, 727, 778
Bme1390I	CCNGG	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	763
BpiI	GAAGAC	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	3 cut(s)	59, 107, 672
BsaI	GGTCTC	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	408
BseGI	GGATG	2 cut(s)	778, 898
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	48, 290
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	2 cut(s)	350, 478
BseXI	GCAGC	4 cut(s)	260, 382, 712, 763
BseYI	CCCAGC	1 cut(s)	779
BshFI	GGCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	13
BsmAI	GTCTC	3 cut(s)	57, 83, 690
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	598
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	49, 291
BspMAI	CTGCAG	1 cut(s)	730
BspQI	GCTCTTC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	408
Bst6I	CTCTTC	3 cut(s)	263, 327, 452
BstDEI	CTNAG	3 cut(s)	57, 254, 299
BstF5I	GGATG	2 cut(s)	778, 898
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	3 cut(s)	57, 83, 690
BstMBI	GATC	1 cut(s)	598
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	726
BstV1I	GCAGC	4 cut(s)	260, 382, 712, 763
BstV2I	GAAGAC	1 cut(s)	708
BstXI	CCANNNNNNTGG	1 cut(s)	889
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	777
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	778, 898
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	2 cut(s)	327, 497
CviAII	CATG	5 cut(s)	15, 95, 245, 317, 749
DdeI	CTNAG	3 cut(s)	57, 254, 299
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
Eam1104I	CTCTTC	3 cut(s)	263, 327, 452
EarI	CTCTTC	3 cut(s)	263, 327, 452
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	351
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	5 cut(s)	18, 98, 248, 320, 752
FatI	CATG	5 cut(s)	14, 94, 244, 316, 748
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	4 cut(s)	274, 396, 726, 777
FokI	GGATG	2 cut(s)	785, 905
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	4 cut(s)	274, 396, 726, 777
FspBI	CTAG	3 cut(s)	30, 161, 699
GluI	GCNGC	4 cut(s)	274, 396, 726, 777
GsaI	CCCAGC	1 cut(s)	783
HaeIII	GGCC	1 cut(s)	304
Hin1II	CATG	5 cut(s)	18, 98, 248, 320, 752
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	91, 115, 710
HpaI	GTTAAC	1 cut(s)	180
HphI	GGTGA	2 cut(s)	860, 908
Hpy166II	GTNNAC	3 cut(s)	180, 743, 868
Hpy188I	TCNGA	5 cut(s)	300, 540, 571, 709, 834
Hpy188III	TCNNGA	4 cut(s)	56, 76, 582, 689
Hpy8I	GTNNAC	3 cut(s)	180, 743, 868
HpyCH4V	TGCA	2 cut(s)	668, 728
HpyF3I	CTNAG	3 cut(s)	57, 254, 299
Hsp92II	CATG	5 cut(s)	18, 98, 248, 320, 752
Ksp22I	TGATCA	1 cut(s)	598
KspAI	GTTAAC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	598
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	2 cut(s)	16, 884
LpnPI	CCDG	9 cut(s)	69, 87, 120, 318, 393, 420, 567, 765, 870
Lsp1109I	GCAGC	4 cut(s)	260, 382, 712, 763
LweI	GCATC	1 cut(s)	763
MaeI	CTAG	3 cut(s)	30, 161, 699
MaeIII	GTNAC	2 cut(s)	20, 353
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	9 cut(s)	18, 74, 280, 344, 423, 442, 466, 469, 708
MfeI	CAATTG	2 cut(s)	109, 720
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	8 cut(s)	109, 184, 212, 240, 449, 577, 659, 720
MlyI	GAGTC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	864
MseI	TTAA	2 cut(s)	179, 614
MslI	CAYNNNNRTG	2 cut(s)	368, 560
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	2 cut(s)	109, 720
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	408
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	5 cut(s)	18, 98, 248, 320, 752
NmuCI	GTSAC	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	263
PctI	GAATGC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	2 cut(s)	115, 710
PkrI	GCNGC	4 cut(s)	275, 397, 727, 778
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	730
RseI	CAYNNNNRTG	2 cut(s)	368, 560
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	179, 614
SatI	GCNGC	4 cut(s)	274, 396, 726, 777
Sau3AI	GATC	1 cut(s)	598
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	763
SfcI	CTRYAG	1 cut(s)	726
SmiMI	CAYNNNNRTG	2 cut(s)	368, 560
SmlI	CTYRAG	3 cut(s)	74, 86, 687
SmoI	CTYRAG	3 cut(s)	74, 86, 687
Sse9I	AATT	8 cut(s)	109, 184, 212, 240, 449, 577, 659, 720
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	3 cut(s)	30, 161, 699
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	406
TasI	AATT	8 cut(s)	109, 184, 212, 240, 449, 577, 659, 720
TfiI	GAWTC	2 cut(s)	115, 710
Tru1I	TTAA	2 cut(s)	179, 614
Tru9I	TTAA	2 cut(s)	179, 614
TscAI	CASTG	2 cut(s)	334, 504
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	273, 395, 725, 776
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	6 cut(s)	81, 107, 160, 233, 751, 873
TspRI	CASTG	2 cut(s)	334, 504
XapI	RAATTY	2 cut(s)	212, 240
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	3 cut(s)	30, 161, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.