Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Forward (+)

70220221 .. 70221771

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG503100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGAAGAGCTCCATGTTGTGACAAAGCTAGTGTCAAAAGAGGGCAATGGTCTCCTGAGGAAGATGAAGCTCTCAAGACTTACCTTGAGACTCATGGAACTGGTGGCAATTGGATTCATCTGCCTCAAAAAGCTGGGCTTAGGAGATGTGGGAAGAGCTGCCGTCTGCGGTGGTTGAACTATCTGAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAGGAGGACAACATTATCTGTAACCTCTACACTCAAATGGGAAGCCGATGGTCATACATAGCTGCTCAAATGCCTGGAAGAACAGACAATGATGTGAAGAACTATTGGAACACCAAATTGAAGAAGAGGTTTTTTAGCAAAAACTCAAATGCCTCCTCACTCACACTGCCTTGTGTTCCAAAACTTGAAACCAATGATGAGTTTCAGACCCAAATACCTCCCACATTGATGTTATCTGATTATAATTCTGGATTGAATGCCTATGATCAAAGTTTGAGCTTAAAGCCAAATCCATTACACAACTCCAAGCTCACGGGTTTATCACAATTTGGTGCAAGTTCTGTTTCAATGTCTCAAGATGGTTCGAGTGTTTCAGATTCGTCTTCAATTGCTGCAGTTGACAATGGTTTACTACATGGAAATAGCTTCATAAATGAGGATGCTGCTGGGATATCAATGGATTTTGGATTTGGAGGATTGCCTTATGATGTTGTCAATCAGATGTGGTTTGGAGAAAAAGCCAATGAAGTTGTTCACCCCACTTGCTCCACAAGTTTGGATGGTGATTTCTTTTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

266

Amino Acids

29.45

Weight (kDa)

5.87

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	1.2e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.7e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	5.2e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 115	4.3e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AciI	CCGC	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	237
AgsI	TTSAA	6 cut(s)	178, 340, 407, 475, 567, 606
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	9 cut(s)	11, 29, 71, 134, 159, 281, 498, 529, 645
AluI	AGCT	9 cut(s)	11, 29, 71, 134, 159, 281, 498, 529, 645
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	3 cut(s)	57, 83, 576
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	4 cut(s)	159, 281, 611, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
Asp700I	GAANNNNTTC	1 cut(s)	750
AsuHPI	GGTGA	2 cut(s)	746, 794
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	146, 268, 598, 649
BccI	CCATC	3 cut(s)	261, 572, 773
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	3 cut(s)	57, 83, 576
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	612
BisI	GCNGC	4 cut(s)	160, 282, 612, 663
BlsI	GCNGC	4 cut(s)	161, 283, 613, 664
Bme1390I	CCNGG	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	649
BpiI	GAAGAC	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	3 cut(s)	59, 107, 558
BsaI	GGTCTC	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	664, 784
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	48, 176
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	2 cut(s)	236, 364
BseXI	GCAGC	4 cut(s)	146, 268, 598, 649
BseYI	CCCAGC	2 cut(s)	134, 665
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	13
BsmAI	GTCTC	3 cut(s)	57, 83, 576
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	484
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	49, 177
BspMAI	CTGCAG	1 cut(s)	616
BspQI	GCTCTTC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	294
Bst6I	CTCTTC	3 cut(s)	149, 213, 338
BstDEI	CTNAG	3 cut(s)	57, 140, 185
BstF5I	GGATG	2 cut(s)	664, 784
BstKTI	GATC	1 cut(s)	487
BstMAI	GTCTC	3 cut(s)	57, 83, 576
BstMBI	GATC	1 cut(s)	484
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	4 cut(s)	146, 268, 598, 649
BstV2I	GAAGAC	1 cut(s)	594
BstXI	CCANNNNNNTGG	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	664, 784
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	213, 383
CviAII	CATG	4 cut(s)	15, 95, 203, 635
DdeI	CTNAG	3 cut(s)	57, 140, 185
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
Eam1104I	CTCTTC	3 cut(s)	149, 213, 338
EarI	CTCTTC	3 cut(s)	149, 213, 338
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	672
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	4 cut(s)	18, 98, 206, 638
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	4 cut(s)	14, 94, 202, 634
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	4 cut(s)	160, 282, 612, 663
FokI	GGATG	2 cut(s)	671, 791
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	4 cut(s)	160, 282, 612, 663
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	4 cut(s)	160, 282, 612, 663
GsaI	CCCAGC	2 cut(s)	138, 669
HaeIII	GGCC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	18, 98, 206, 638
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	3 cut(s)	91, 115, 596
HphI	GGTGA	2 cut(s)	746, 794
Hpy166II	GTNNAC	3 cut(s)	619, 629, 754
Hpy188I	TCNGA	5 cut(s)	186, 426, 457, 595, 720
Hpy188III	TCNNGA	4 cut(s)	56, 76, 468, 575
Hpy8I	GTNNAC	3 cut(s)	619, 629, 754
HpyCH4V	TGCA	2 cut(s)	554, 614
HpyF3I	CTNAG	3 cut(s)	57, 140, 185
Hsp92II	CATG	4 cut(s)	18, 98, 206, 638
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	1 cut(s)	484
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	16, 770
LpnPI	CCDG	8 cut(s)	69, 87, 120, 204, 279, 306, 453, 651
Lsp1109I	GCAGC	4 cut(s)	146, 268, 598, 649
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	20, 239
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MboII	GAAGA	9 cut(s)	18, 74, 166, 230, 309, 328, 352, 355, 594
MfeI	CAATTG	2 cut(s)	109, 606
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	5 cut(s)	109, 335, 463, 545, 606
MlyI	GAGTC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	1 cut(s)	500
MslI	CAYNNNNRTG	2 cut(s)	254, 446
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	2 cut(s)	109, 606
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	484
NlaIII	CATG	4 cut(s)	18, 98, 206, 638
NmuCI	GTSAC	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	115, 596
PkrI	GCNGC	4 cut(s)	161, 283, 613, 664
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	2 cut(s)	134, 665
PspGI	CCWGG	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	616
RseI	CAYNNNNRTG	2 cut(s)	254, 446
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	4 cut(s)	160, 282, 612, 663
Sau3AI	GATC	1 cut(s)	484
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	649
SfcI	CTRYAG	1 cut(s)	612
SmiMI	CAYNNNNRTG	2 cut(s)	254, 446
SmlI	CTYRAG	3 cut(s)	74, 86, 573
SmoI	CTYRAG	3 cut(s)	74, 86, 573
Sse9I	AATT	5 cut(s)	109, 335, 463, 545, 606
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	292
TaqI	TCGA	1 cut(s)	584
TasI	AATT	5 cut(s)	109, 335, 463, 545, 606
TfiI	GAWTC	2 cut(s)	115, 596
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TscAI	CASTG	2 cut(s)	220, 390
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	159, 281, 611, 662
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	81, 107, 637, 759
TspRI	CASTG	2 cut(s)	220, 390
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.