Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Reverse (-)

2046858 .. 2047983

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGGCTTTACTGAAGAGGAGGACAACATTATCTGTAGCCTCTACAGTCAAATGGGAAGCCGCTGCTCAAATGCCTGGAAGAACAGACAATGATGTGAAGAACTATTGGAACACCAAATTGAAGAAGAAGTTTTTTAGCAAAAACCCAAATGCCTCCTCATTCACACTGCCTTGTGTTCCAAAACTTGAAACCAATGATGAGTTTCAGACCCAAATACTTCCCACATTGATGTTATCTGATTATAATTCTGGATTGAATGCCTATGATCAAAGTTTGAGCTTAAGGCCAAATCCAGTACACAACTCCAAGCTCACGGGTTTATCACAATTTGGTGCAAGTTCTGTCTCAATGTCTCAAGATGGTTCGAGTGTTTCGGACTCGTCTTCAATTGCTGCAGTTGACAATGGTTTACTACATGGAAATAGCTTCATAAATGAGGATGCTGCTGGGATATCAATGGATTTTGGATTTGGAGGATTGCCTTATGATGTTGTCAATCAGATGTGGTTTGGAGAAAAAGCCAATGAAGTTGTTCACCCCACTTGCTCCACAAGTTTGGATGATGGCCTCAGCATGTTTGCCTTTTTCTTTATGGGTCACAGCTTCACAGGGGTCATGAAATTTTCATGGAAGAATTCAAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

217

Amino Acids

23.67

Weight (kDa)

6.06

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AciI	CCGC	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	623, 637
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	300
AflII	CTTAAG	1 cut(s)	283
AgsI	TTSAA	5 cut(s)	124, 191, 259, 390, 642
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	5 cut(s)	282, 313, 429, 606, 646
AluI	AGCT	5 cut(s)	282, 313, 429, 606, 646
Alw26I	GTCTC	2 cut(s)	352, 360
AoxI	GGCC	2 cut(s)	287, 568
ApeKI	GCWGC	3 cut(s)	65, 395, 446
ApoI	RAATTY	2 cut(s)	623, 637
Asp700I	GAANNNNTTC	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	572
BbvI	GCAGC	3 cut(s)	52, 382, 433
BccI	CCATC	2 cut(s)	356, 560
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	352, 360
BfmI	CTRYAG	3 cut(s)	36, 45, 396
BfrI	CTTAAG	1 cut(s)	283
BisI	GCNGC	4 cut(s)	63, 66, 396, 447
BlsI	GCNGC	4 cut(s)	64, 67, 397, 448
Bme1390I	CCNGG	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	448, 568
BseMII	CTCAG	1 cut(s)	586
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	34, 148
BseXI	GCAGC	3 cut(s)	52, 382, 433
BseYI	CCCAGC	1 cut(s)	449
BshFI	GGCC	2 cut(s)	289, 570
BsmAI	GTCTC	2 cut(s)	352, 360
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	289, 570
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	2 cut(s)	289, 570
BspCNI	CTCAG	1 cut(s)	585
BspHI	TCATGA	1 cut(s)	618
BspMAI	CTGCAG	1 cut(s)	400
BspTI	CTTAAG	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	296
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	11
BstAFI	CTTAAG	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	572
BstF5I	GGATG	2 cut(s)	448, 568
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	352, 360
BstMBI	GATC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	3 cut(s)	36, 45, 396
BstV1I	GCAGC	3 cut(s)	52, 382, 433
BstV2I	GAAGAC	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	289, 570
BtsCI	GGATG	2 cut(s)	448, 568
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	4 cut(s)	419, 577, 619, 630
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	1 cut(s)	572
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	456
FaeI	CATG	4 cut(s)	422, 580, 622, 633
FaiI	YATR	9 cut(s)	246, 267, 420, 434, 489, 578, 596, 620, 631
FatI	CATG	4 cut(s)	418, 576, 618, 629
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	4 cut(s)	63, 66, 396, 447
FokI	GGATG	2 cut(s)	455, 575
Fsp4HI	GCNGC	4 cut(s)	63, 66, 396, 447
GluI	GCNGC	4 cut(s)	63, 66, 396, 447
GsaI	CCCAGC	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	289, 570
Hin1II	CATG	4 cut(s)	422, 580, 622, 633
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	1 cut(s)	380
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	4 cut(s)	301, 403, 413, 538
Hpy188I	TCNGA	5 cut(s)	210, 241, 379, 504, 650
Hpy188III	TCNNGA	3 cut(s)	252, 359, 619
Hpy8I	GTNNAC	4 cut(s)	301, 403, 413, 538
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	338, 398
HpyF3I	CTNAG	1 cut(s)	572
Hsp92II	CATG	4 cut(s)	422, 580, 622, 633
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	554
LpnPI	CCDG	6 cut(s)	63, 90, 237, 309, 435, 597
Lsp1109I	GCAGC	3 cut(s)	52, 382, 433
LweI	GCATC	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	7 cut(s)	28, 93, 112, 136, 139, 378, 646
MfeI	CAATTG	1 cut(s)	390
MluCI	AATT	6 cut(s)	119, 247, 329, 390, 623, 637
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	8 cut(s)	12, 15, 52, 166, 169, 433, 470, 581
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	4 cut(s)	422, 580, 622, 633
NmuCI	GTSAC	1 cut(s)	599
NspI	RCATGY	1 cut(s)	580
PagI	TCATGA	1 cut(s)	618
PctI	GAATGC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	534
PkrI	GCNGC	4 cut(s)	64, 67, 397, 448
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PsiI	TTATAA	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	400
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	4 cut(s)	63, 66, 396, 447
Sau3AI	GATC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	5 cut(s)	284, 315, 431, 608, 648
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	3 cut(s)	36, 45, 396
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	283, 357
SmoI	CTYRAG	2 cut(s)	283, 357
Sse9I	AATT	6 cut(s)	119, 247, 329, 390, 623, 637
SsiI	CCGC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	368
TasI	AATT	6 cut(s)	119, 247, 329, 390, 623, 637
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	3 cut(s)	65, 395, 446
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	4 cut(s)	421, 543, 618, 635
TspRI	CASTG	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	283
XapI	RAATTY	2 cut(s)	623, 637
XceI	RCATGY	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.