Rh2BG072100
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002896
Physical Location & Seq
Forward (+)
5430530 .. 5431725
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG072100.1

Sequence Viewer

Length: 477 bp
ATGGGAAGAGCTCCATGCTGTGACAAATCTAAAGTGAAAAGAGGACCATGGTCTCCCGAAGAAGACGCCACCCTCAAGAACTACCTCCACGAACATGGCACCACTGGCAATTGGATTACTCTACCAACCAAAGCAGGTGGCACATTACCATATGCAGCGAACATAAGTTTGGTGCATAGTTTTGATCAACCAAAGCAAACTTTTGAACCCTGGTGCAATCATTCTGATTCAAAGCCTATGGAAGTTTCTGATTTTGGCAGCACTAGTGAAAGTAACAGTTTCAGTATTCCACTATCTCATCAGGAAGTTTCAAGTCTTCCCAGTTCATCCAGTTTGGCTCAGCTGGATCAGTACCATTGCTCCTTGTGGTCTGGACATGAAGGTATCAATTACGTTAACAGCGAGTTCCTTATGGATGACTTCGGATTCGAAACTCCTCCTGCTGATCAGTTTCTTCTGGGTGGCTTTGGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

158

Amino Acids

17.4

Weight (kDa)

5.05

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 47 1.3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 98
AclWI GGATC 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 353
AgsI TTSAA 3 cut(s) 206, 231, 312
AhlI ACTAGT 1 cut(s) 263
AjnI CCWGG 1 cut(s) 209
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 2 cut(s) 11, 343
AluI AGCT 2 cut(s) 11, 343
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 155, 258
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AspS9I GGNCC 1 cut(s) 44
AsuII TTCGAA 1 cut(s) 429
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 69, 308
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 167, 270
BciT130I CCWGG 1 cut(s) 211
BclI TGATCA 2 cut(s) 184, 445
BcoDI GTCTC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 125
BisI GCNGC 2 cut(s) 156, 259
BlpI GCTNAGC 1 cut(s) 339
BlsI GCNGC 2 cut(s) 157, 260
Bme1390I CCNGG 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 315
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 2 cut(s) 69, 308
Bpu1102I GCTNAGC 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 47, 209
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bse1I ACTGG 3 cut(s) 109, 321, 330
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 2 cut(s) 47, 209
BseGI GGATG 2 cut(s) 326, 421
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 3 cut(s) 109, 321, 330
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 2 cut(s) 167, 270
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 3 cut(s) 184, 346, 445
Bsp1720I GCTNAGC 1 cut(s) 339
Bsp19I CCATGG 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 354
BspT104I TTCGAA 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 3 cut(s) 109, 321, 330
BssECI CCNNGG 2 cut(s) 47, 209
BssMI GATC 3 cut(s) 184, 346, 445
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 278
BstACI GRCGYC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 326, 421
BstKTI GATC 3 cut(s) 187, 349, 448
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 3 cut(s) 184, 346, 445
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 211
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 167, 270
BstV2I GAAGAC 2 cut(s) 69, 308
BstXI CCANNNNNNTGG 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 326, 421
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 352
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 4 cut(s) 15, 48, 95, 377
CviJI RGCY 5 cut(s) 11, 235, 338, 343, 465
CviKI_1 RGCY 5 cut(s) 11, 235, 338, 343, 465
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 1 cut(s) 339
DpnI GATC 3 cut(s) 186, 348, 447
DpnII GATC 3 cut(s) 184, 346, 445
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 4 cut(s) 18, 51, 98, 380
FatI CATG 4 cut(s) 14, 47, 94, 376
FauNDI CATATG 1 cut(s) 151
FbaI TGATCA 2 cut(s) 184, 445
Fnu4HI GCNGC 2 cut(s) 156, 259
FokI GGATG 2 cut(s) 313, 428
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 156, 259
FspBI CTAG 1 cut(s) 264
GluI GCNGC 2 cut(s) 156, 259
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 4 cut(s) 18, 51, 98, 380
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 2 cut(s) 227, 426
HpaI GTTAAC 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 3 cut(s) 226, 250, 425
Hpy188III TCNNGA 4 cut(s) 56, 76, 302, 372
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 1 cut(s) 374
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 3 cut(s) 155, 175, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 393
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 4 cut(s) 18, 51, 98, 380
Ksp22I TGATCA 2 cut(s) 184, 445
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 3 cut(s) 184, 346, 445
LmnI GCTCC 2 cut(s) 16, 365
Lsp1109I GCAGC 2 cut(s) 167, 270
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 20, 272
MalI GATC 3 cut(s) 186, 348, 447
MboI GATC 3 cut(s) 184, 346, 445
MboII GAAGA 5 cut(s) 18, 71, 74, 308, 446
MfeI CAATTG 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 109, 388
MnlI CCTC 4 cut(s) 35, 83, 95, 447
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 211
MunI CAATTG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 105
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 151
NdeII GATC 3 cut(s) 184, 346, 445
NlaIII CATG 4 cut(s) 18, 51, 98, 380
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 20
NspV TTCGAA 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PfeI GAWTC 2 cut(s) 227, 426
PkrI GCNGC 2 cut(s) 157, 260
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 343
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 2 cut(s) 156, 259
Sau3AI GATC 3 cut(s) 184, 346, 445
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 1 cut(s) 13
SetI ASST 6 cut(s) 13, 87, 139, 345, 385, 396
SfuI TTCGAA 1 cut(s) 429
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 263
Sse9I AATT 2 cut(s) 109, 388
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 429
TasI AATT 2 cut(s) 109, 388
TfiI GAWTC 2 cut(s) 227, 426
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 155, 258
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 315, 393
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 44
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.