Rmu_co8482105.1_g000001
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8482105.1
OG0002896
Physical Location & Seq
Forward (+)
485 .. 1678
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8482105.1_g000001.1.cds

Sequence Viewer

Length: 852 bp
atgggaagagctccatgctgtgacaaatctaaagtgaaaagaggaccatggtctcccgaagaagacgccaccctcaagaactacctccacgaacatggcaccactggcaattggattactctaccaaccaaagcaggcctgaatcgttgcggtaagagttgtcgtttgagatggctgaactatcttaggccagacatcaagcgtggtactttcacggagatagaagacaatgttatctgcactctctttagaagcattggaagcaggcaagtgaatgactatggcactcatatatggtggtctgtcatagcttctcaactgccaggacgaacagataatgatgtgaaaaactattggaacacaaagttgaagaaaaagctgctggcggttgctgcaagaaataacattgtggctgctagacggacatgtgatcacaacattgctgatcagttttcagctccagttcctcccaaaatcgaaacccctcatggccccaagacttcatcttgtttaggtggcacattaccatatgcagcgaacataagtttggtgcatagttttgatcaaccaaagcaaacttttgaaccctggtgcaatcattctgattcaaagcctatggaagtttctgattttggcagcactagtgaaagtaacagtttcagtattccactatctcatcaggaagtttcaaggcttcccagttcatccagtttggctcagctggatcagtaccattgctccttgtggtctggacatgaaggtatcaattacgttaacagcgagttccttatggacttcggattcgaaactccttctgctgatcagtttcttctgggtggctttggtcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

283

Amino Acids

31.63

Weight (kDa)

8.06

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 2 cut(s) 150, 386
AclWI GGATC 1 cut(s) 732
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 208, 731
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 4 cut(s) 370, 584, 609, 690
AhlI ACTAGT 1 cut(s) 641
AjnI CCWGG 2 cut(s) 322, 587
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 5 cut(s) 11, 311, 379, 458, 721
AluI AGCT 5 cut(s) 11, 311, 379, 458, 721
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 732
AoxI GGCC 3 cut(s) 136, 188, 490
ApeKI GCWGC 5 cut(s) 379, 392, 413, 533, 636
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
AspS9I GGNCC 2 cut(s) 44, 491
AsuII TTCGAA 1 cut(s) 804
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 69, 231
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 5 cut(s) 366, 379, 400, 545, 648
BccI CCATC 1 cut(s) 165
BciT130I CCWGG 2 cut(s) 324, 589
BclI TGATCA 4 cut(s) 430, 445, 562, 820
BcoDI GTCTC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 2 cut(s) 417, 642
BisI GCNGC 5 cut(s) 380, 393, 414, 534, 637
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 5 cut(s) 381, 394, 415, 535, 638
Bme1390I CCNGG 2 cut(s) 324, 589
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 44, 491
BmiI GGNNCC 2 cut(s) 100, 493
BmrFI CCNGG 2 cut(s) 324, 589
BmrI ACTGGG 1 cut(s) 693
BmuI ACTGGG 1 cut(s) 693
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 2 cut(s) 69, 231
BpmI CTGGAG 1 cut(s) 444
Bpu1102I GCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 47, 587
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bse1I ACTGG 4 cut(s) 109, 461, 699, 708
Bse3DI GCAATG 2 cut(s) 438, 733
BseBI CCWGG 2 cut(s) 324, 589
BseDI CCNNGG 2 cut(s) 47, 587
BseGI GGATG 1 cut(s) 704
BseMI GCAATG 2 cut(s) 438, 733
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 4 cut(s) 109, 461, 699, 708
BseXI GCAGC 5 cut(s) 366, 379, 400, 545, 648
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 3 cut(s) 138, 190, 492
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 3 cut(s) 138, 190, 492
Bso31I GGTCTC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 5 cut(s) 430, 445, 562, 724, 820
Bsp1720I GCTNAGC 1 cut(s) 717
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 150, 386
BspANI GGCC 3 cut(s) 138, 190, 492
BspCNI CTCAG 1 cut(s) 730
BspLI GGNNCC 2 cut(s) 100, 493
BspPI GGATC 1 cut(s) 732
BspT104I TTCGAA 1 cut(s) 804
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 2 cut(s) 438, 733
BsrI ACTGG 4 cut(s) 109, 461, 699, 708
BssECI CCNNGG 2 cut(s) 47, 587
BssMI GATC 5 cut(s) 430, 445, 562, 724, 820
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 324, 589
Bst4CI ACNGT 1 cut(s) 656
BstACI GRCGYC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 804
BstC8I GCNNGC 3 cut(s) 136, 266, 384
BstDEI CTNAG 2 cut(s) 185, 717
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 704
BstKTI GATC 5 cut(s) 433, 448, 565, 727, 823
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 5 cut(s) 430, 445, 562, 724, 820
BstMWI GCNNNNNNNGC 3 cut(s) 105, 261, 392
BstNI CCWGG 2 cut(s) 324, 589
BstNSI RCATGY 1 cut(s) 429
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 322, 587
BstV1I GCAGC 5 cut(s) 366, 379, 400, 545, 648
BstV2I GAAGAC 2 cut(s) 69, 231
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 3 cut(s) 138, 190, 492
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 704
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 3 cut(s) 136, 266, 384
Cfr13I GGNCC 2 cut(s) 44, 491
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 207, 730
CviAII CATG 6 cut(s) 15, 48, 95, 426, 488, 755
CviQI GTAC 2 cut(s) 207, 730
DdeI CTNAG 2 cut(s) 185, 717
DpnI GATC 5 cut(s) 432, 447, 564, 726, 822
DpnII GATC 5 cut(s) 430, 445, 562, 724, 820
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 322, 587
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 6 cut(s) 18, 51, 98, 429, 491, 758
FatI CATG 6 cut(s) 14, 47, 94, 425, 487, 754
FauNDI CATATG 1 cut(s) 529
FbaI TGATCA 4 cut(s) 430, 445, 562, 820
Fnu4HI GCNGC 5 cut(s) 380, 393, 414, 534, 637
FokI GGATG 1 cut(s) 691
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 5 cut(s) 380, 393, 414, 534, 637
FspBI CTAG 2 cut(s) 417, 642
GluI GCNGC 5 cut(s) 380, 393, 414, 534, 637
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 3 cut(s) 138, 190, 492
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 6 cut(s) 18, 51, 98, 429, 491, 758
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 3 cut(s) 142, 605, 801
HpaI GTTAAC 1 cut(s) 775
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 3 cut(s) 604, 628, 800
Hpy188III TCNNGA 4 cut(s) 56, 76, 680, 750
Hpy8I GTNNAC 1 cut(s) 775
HpyAV CCTTC 2 cut(s) 752, 822
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4IV ACGT 1 cut(s) 771
HpyCH4V TGCA 5 cut(s) 240, 395, 533, 553, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 261, 392
HpyF3I CTNAG 2 cut(s) 185, 717
HpySE526I ACGT 1 cut(s) 771
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 6 cut(s) 18, 51, 98, 429, 491, 758
Ksp22I TGATCA 4 cut(s) 430, 445, 562, 820
KspAI GTTAAC 1 cut(s) 775
Kzo9I GATC 5 cut(s) 430, 445, 562, 724, 820
LmnI GCTCC 3 cut(s) 16, 463, 743
Lsp1109I GCAGC 5 cut(s) 366, 379, 400, 545, 648
MaeI CTAG 2 cut(s) 417, 642
MaeII ACGT 1 cut(s) 771
MaeIII GTNAC 2 cut(s) 20, 650
MalI GATC 5 cut(s) 432, 447, 564, 726, 822
MboI GATC 5 cut(s) 430, 445, 562, 724, 820
MboII GAAGA 6 cut(s) 18, 71, 74, 236, 382, 821
MfeI CAATTG 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 109, 766
MnlI CCTC 5 cut(s) 35, 83, 95, 477, 495
MseI TTAA 1 cut(s) 774
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 721
MspR9I CCNGG 2 cut(s) 324, 589
MunI CAATTG 1 cut(s) 109
MvaI CCWGG 2 cut(s) 324, 589
MwoI GCNNNNNNNGC 3 cut(s) 105, 261, 392
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 529
NdeII GATC 5 cut(s) 430, 445, 562, 724, 820
NlaIII CATG 6 cut(s) 18, 51, 98, 429, 491, 758
NlaIV GGNNCC 2 cut(s) 100, 493
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 429
NspV TTCGAA 1 cut(s) 804
PceI AGGCCT 1 cut(s) 138
PciI ACATGT 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PfeI GAWTC 3 cut(s) 142, 605, 801
PkrI GCNGC 5 cut(s) 381, 394, 415, 535, 638
PscI ACATGT 1 cut(s) 425
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 322, 587
PspGI CCWGG 2 cut(s) 322, 587
PspN4I GGNNCC 2 cut(s) 100, 493
PspPI GGNCC 2 cut(s) 44, 491
PvuII CAGCTG 1 cut(s) 721
RsaI GTAC 2 cut(s) 208, 731
RsaNI GTAC 2 cut(s) 207, 730
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 5 cut(s) 380, 393, 414, 534, 637
Sau3AI GATC 5 cut(s) 430, 445, 562, 724, 820
Sau96I GGNCC 2 cut(s) 44, 491
ScrFI CCNGG 2 cut(s) 324, 589
SduI GDGCHC 1 cut(s) 13
SetI ASST 9 cut(s) 13, 87, 313, 381, 460, 517, 723, 763, 774
SfuI TTCGAA 1 cut(s) 804
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 641
Sse9I AATT 2 cut(s) 109, 766
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 2 cut(s) 150, 386
SspMI CTAG 2 cut(s) 417, 642
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 322, 587
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 656
TaiI ACGT 1 cut(s) 774
TaqI TCGA 2 cut(s) 477, 804
TasI AATT 2 cut(s) 109, 766
TfiI GAWTC 3 cut(s) 142, 605, 801
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 5 cut(s) 379, 392, 413, 533, 636
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 492, 693, 771
TspGWI ACGGA 2 cut(s) 230, 436
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 44
XceI RCATGY 1 cut(s) 429
XspI CTAG 2 cut(s) 417, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.