Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002896

Physical Location & Seq

Genomic Coordinates Forward (+)

66913121 .. 66914676

Gene Structure 1556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG508100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGAAGCCGATGGTCATACATAGCTGCTCAAATGCCTGGAAGAACAGACAATGATGTGAAGAACTATTGGAACACCAAATTGAAGAAGAGGTTTTTTAGCAAAAACTCAAATGCCTCCTCACTCACACTGCCTTGTGTTCCAAAACTTGAAACCAATGATGAGTTTCAGACCCAAATACCTCCCACATTGATGTTATCTGATTATAATTCTGGATTGAATGCCTATGATCAAAGTTTGAGCTTAAAGCCAAATCCATTACACAACTCCAAGCTCACGGGTTTATCACAATTTGGTGCAAGTTCTGTTTCAATGTCTCAAGATGGTTCGAGTGTTTCAGATTCGTCTTCAATTGCTGCAGTTGACAATGGTTTACTACATGGAAATAGCTTCATAAATGAGGATGCTGCTGGGATATCAATGGATTTTGGATTTGGAGGATTGCCTTATGATGTTGTCAATCAGATGTGGTTTGGAGAAAAAGCCAATGAAGTTGTTCACCCCACTTGCTCCACAAGTTTGGATGGTGATTTCTTTTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

181

Amino Acids

19.72

Weight (kDa)

4.86

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 26	8.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37780
fragaria_vesca	FvH4_1g06660 FvH4_1g06660 FvH4_1g06660 FvH4_2g32340
malus_domestica	MD08G1074700.v1.1 MD15G1062400.v1.1 MD15G1201500.v1.1
prunus_persica	Prupe.1G416400_v2.0.a1 Prupe.1G416400_v2.0.a1 Prupe.7G216000_v2.0.a1 Prupe.7G216000_v2.0.a1
pyrus_communis	pycom08g06170 pycom15g05910 pycom15g17890
rosa_chinensis	RchiOBHm_Chr2g0092411 RchiOBHm_Chr6g0310351
rosa_laevigata	RLG00000010490 RLG00000016308
rosa_multiflora	Rmu_co8482105.1_g000001 Rmu_sc0001195.1_g000022 Rmu_sc0002348.1_g000005 Rmu_sc0004296.1_g000008
rosa_roxburghii	Rroxscaffold_7G00158630
rosa_rugosa	Rorug02G0026000.1 Rorug06G0379200 Rorug06G0379200
rosa_samantha	Rh2AG071900 Rh2BG072100 Rh2CG073400 Rh2DG070400 Rh2DG072100 Rh6AG493400 Rh6BG503100 Rh6CG508100 Rh6DG494200
rosa_wichuraiana	Rw2G006070 Rw6G042930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AgsI	TTSAA	5 cut(s)	85, 152, 220, 312, 351
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	4 cut(s)	26, 243, 274, 390
AluI	AGCT	4 cut(s)	26, 243, 274, 390
Alw26I	GTCTC	1 cut(s)	321
ApeKI	GCWGC	3 cut(s)	26, 356, 407
Asp700I	GAANNNNTTC	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	491, 539
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	13, 343, 394
BccI	CCATC	3 cut(s)	6, 317, 518
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	3 cut(s)	27, 357, 408
BlsI	GCNGC	3 cut(s)	28, 358, 409
Bme1390I	CCNGG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	409, 529
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	3 cut(s)	13, 343, 394
BseYI	CCCAGC	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	361
BssMI	GATC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	409, 529
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	229
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	13, 343, 394
BstV2I	GAAGAC	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	409, 529
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	128
CviAII	CATG	1 cut(s)	380
CviJI	RGCY	7 cut(s)	9, 26, 243, 250, 274, 390, 485
CviKI_1	RGCY	7 cut(s)	9, 26, 243, 250, 274, 390, 485
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	417
FaeI	CATG	1 cut(s)	383
FaiI	YATR	7 cut(s)	19, 23, 207, 228, 381, 395, 450
FatI	CATG	1 cut(s)	379
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	27, 357, 408
FokI	GGATG	2 cut(s)	416, 536
Fsp4HI	GCNGC	3 cut(s)	27, 357, 408
GluI	GCNGC	3 cut(s)	27, 357, 408
GsaI	CCCAGC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	1 cut(s)	341
HphI	GGTGA	2 cut(s)	491, 539
Hpy166II	GTNNAC	3 cut(s)	364, 374, 499
Hpy188I	TCNGA	4 cut(s)	171, 202, 340, 465
Hpy188III	TCNNGA	2 cut(s)	213, 320
Hpy8I	GTNNAC	3 cut(s)	364, 374, 499
HpyCH4V	TGCA	2 cut(s)	299, 359
Hsp92II	CATG	1 cut(s)	383
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	515
LpnPI	CCDG	4 cut(s)	24, 51, 198, 396
Lsp1109I	GCAGC	3 cut(s)	13, 343, 394
LweI	GCATC	1 cut(s)	394
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	5 cut(s)	54, 73, 97, 100, 339
MfeI	CAATTG	1 cut(s)	351
MluCI	AATT	4 cut(s)	80, 208, 290, 351
MnlI	CCTC	6 cut(s)	84, 127, 130, 192, 394, 431
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	39
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	383
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	28, 358, 409
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	3 cut(s)	27, 357, 408
Sau3AI	GATC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	6 cut(s)	28, 95, 184, 245, 276, 392
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	80, 208, 290, 351
StyD4I	CCNGG	1 cut(s)	37
TaqI	TCGA	1 cut(s)	329
TasI	AATT	4 cut(s)	80, 208, 290, 351
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	3 cut(s)	26, 356, 407
TspDTI	ATGAA	2 cut(s)	382, 504
TspRI	CASTG	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.