FvH4_1g06660
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002896
Physical Location & Seq
Forward (+)
3517461 .. 3518932
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06660.t2

Sequence Viewer

Length: 600 bp
ATGTTGAATTGTGGATCATTATGTTTAATTATTGTCTATGTTTTTGGGATTAGGTGGTCTGTCATAGCTTCTAAACTGCCAGGACGAACAGATAATGATGTGAAAAACCATTGGAACACAAAGTTGAAGAAGAAGCTGCTCGCGGTGGCAGCAAGAAAAAACATCTTTTCTACCAGAAAGAACAACATTGCTCAGTTTTCGTCTCCAGTTCCTCCCAAAATCGAAACCCCTCAAGGCGCCGAGACTGCTTCATCTTGTCTAAGTGGCACATTACCATATGCTGCGAACACAAGCTTTGTGCATAGTTTTGATCAAGCAAAGCAAACTTTGGAACCCTGGTGCAGTTATTTTTCTGGTTCAAAGCCTATGGAAGTTTCTGATTTCGGCAGCACCAGTGAAAGTAACAGTTTCAGTATTCCACAGTCTCATCAGGAAGTCTCAAGTCTTCCCAGCTCATCTAGTTTAGCTCAGCTGGATCAGAACCACTACTCCTTATGGTCTGGATTTGAAGATTTCAACATTAACAGCGATTTCCTTGTGAACTTCGAATTCGAAACTCCTCCTGGTGATCATTTTCTTCCGGGTGGCTTTGGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

200

Amino Acids

21.95

Weight (kDa)

6.19

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 40 4.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccII CGCG 1 cut(s) 143
AciI CCGC 1 cut(s) 143
AclWI GGATC 2 cut(s) 22, 483
AcsI RAATTY 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 237
AgsI TTSAA 5 cut(s) 7, 127, 360, 509, 517
AjnI CCWGG 3 cut(s) 79, 335, 562
AloI GAACNNNNNNTCC 2 cut(s) 473, 505
AluBI AGCT 6 cut(s) 68, 136, 294, 453, 467, 472
AluI AGCT 6 cut(s) 68, 136, 294, 453, 467, 472
Alw26I GTCTC 4 cut(s) 207, 236, 429, 442
AlwI GGATC 2 cut(s) 22, 483
ApeKI GCWGC 4 cut(s) 136, 149, 281, 387
ApoI RAATTY 1 cut(s) 548
AspLEI GCGC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 1 cut(s) 578
AsuII TTCGAA 2 cut(s) 546, 552
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 437
BbvI GCAGC 4 cut(s) 123, 161, 268, 399
BciT130I CCWGG 3 cut(s) 81, 337, 564
BclI TGATCA 2 cut(s) 310, 568
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 4 cut(s) 207, 236, 429, 442
BfaI CTAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 240
BisI GCNGC 4 cut(s) 137, 150, 282, 388
BlpI GCTNAGC 1 cut(s) 468
BlsI GCNGC 4 cut(s) 138, 151, 283, 389
Bme1390I CCNGG 4 cut(s) 81, 337, 564, 582
BmiI GGNNCC 2 cut(s) 238, 333
BmrFI CCNGG 4 cut(s) 81, 337, 564, 582
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 468
Bpu14I TTCGAA 2 cut(s) 546, 552
BpuEI CTTGAG 2 cut(s) 216, 424
BpuMI CCSGG 1 cut(s) 582
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bse1I ACTGG 2 cut(s) 206, 393
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 3 cut(s) 81, 337, 564
BseDI CCNNGG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 206, 482
BseNI ACTGG 2 cut(s) 206, 393
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 4 cut(s) 123, 161, 268, 399
BseYI CCCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 581
BsmAI GTCTC 4 cut(s) 207, 236, 429, 442
BsmBI CGTCTC 1 cut(s) 207
Bsp119I TTCGAA 2 cut(s) 546, 552
Bsp143I GATC 4 cut(s) 14, 310, 475, 568
Bsp1720I GCTNAGC 1 cut(s) 468
BspACI CCGC 1 cut(s) 143
BspCNI CTCAG 2 cut(s) 205, 481
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 238, 333
BspPI GGATC 2 cut(s) 22, 483
BspT104I TTCGAA 2 cut(s) 546, 552
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 2 cut(s) 206, 393
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 4 cut(s) 14, 310, 475, 568
BssNI GRCGYC 1 cut(s) 237
Bst2UI CCWGG 3 cut(s) 81, 337, 564
Bst4CI ACNGT 2 cut(s) 407, 423
BstACI GRCGYC 1 cut(s) 237
BstBI TTCGAA 2 cut(s) 546, 552
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 3 cut(s) 192, 260, 468
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 4 cut(s) 17, 313, 478, 571
BstMAI GTCTC 4 cut(s) 207, 236, 429, 442
BstMBI GATC 4 cut(s) 14, 310, 475, 568
BstMWI GCNNNNNNNGC 2 cut(s) 149, 245
BstNI CCWGG 3 cut(s) 81, 337, 564
BstSCI CCNGG 4 cut(s) 79, 335, 562, 580
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 4 cut(s) 123, 161, 268, 399
BstV2I GAAGAC 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 239
CviJI RGCY 8 cut(s) 68, 136, 294, 364, 453, 467, 472, 588
CviKI_1 RGCY 8 cut(s) 68, 136, 294, 364, 453, 467, 472, 588
DdeI CTNAG 3 cut(s) 192, 260, 468
DinI GGCGCC 1 cut(s) 238
DpnI GATC 4 cut(s) 16, 312, 477, 570
DpnII GATC 4 cut(s) 14, 310, 475, 568
EcoRI GAATTC 1 cut(s) 548
EcoRII CCWGG 3 cut(s) 79, 335, 562
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 207
FaiI YATR 8 cut(s) 22, 39, 65, 277, 279, 303, 368, 496
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 2 cut(s) 310, 568
Fnu4HI GCNGC 4 cut(s) 137, 150, 282, 388
Fsp4HI GCNGC 4 cut(s) 137, 150, 282, 388
FspBI CTAG 1 cut(s) 459
GlaI GCGC 1 cut(s) 238
GluI GCNGC 4 cut(s) 137, 150, 282, 388
GsaI CCCAGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 240
HapII CCGG 1 cut(s) 581
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 237
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 292
HpaII CCGG 1 cut(s) 581
HphI GGTGA 1 cut(s) 578
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 2 cut(s) 379, 480
Hpy188III TCNNGA 2 cut(s) 431, 501
Hpy8I GTNNAC 1 cut(s) 541
HpyCH4III ACNGT 2 cut(s) 407, 423
HpyCH4V TGCA 2 cut(s) 301, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 245
HpyF3I CTNAG 3 cut(s) 192, 260, 468
Hsp92I GRCGYC 1 cut(s) 237
HspAI GCGC 1 cut(s) 237
KasI GGCGCC 1 cut(s) 236
Ksp22I TGATCA 2 cut(s) 310, 568
Kzo9I GATC 4 cut(s) 14, 310, 475, 568
Lsp1109I GCAGC 4 cut(s) 123, 161, 268, 399
MaeI CTAG 1 cut(s) 459
MaeIII GTNAC 1 cut(s) 401
MalI GATC 4 cut(s) 16, 312, 477, 570
MboI GATC 4 cut(s) 14, 310, 475, 568
MboII GAAGA 5 cut(s) 139, 142, 437, 521, 569
MluCI AATT 3 cut(s) 7, 27, 548
Mly113I GGCGCC 1 cut(s) 237
MnlI CCTC 3 cut(s) 222, 240, 570
MseI TTAA 2 cut(s) 26, 522
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 1 cut(s) 581
MspR9I CCNGG 4 cut(s) 81, 337, 564, 582
MvaI CCWGG 3 cut(s) 81, 337, 564
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 149, 245
NarI GGCGCC 1 cut(s) 237
NciI CCSGG 1 cut(s) 582
NdeI CATATG 1 cut(s) 277
NdeII GATC 4 cut(s) 14, 310, 475, 568
NlaIV GGNNCC 2 cut(s) 238, 333
NmeAIII GCCGAG 1 cut(s) 265
NspV TTCGAA 2 cut(s) 546, 552
PkrI GCNGC 4 cut(s) 138, 151, 283, 389
PluTI GGCGCC 1 cut(s) 240
Psp6I CCWGG 3 cut(s) 79, 335, 562
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 3 cut(s) 79, 335, 562
PspN4I GGNNCC 2 cut(s) 238, 333
PvuII CAGCTG 1 cut(s) 472
SaqAI TTAA 2 cut(s) 26, 522
SatI GCNGC 4 cut(s) 137, 150, 282, 388
Sau3AI GATC 4 cut(s) 14, 310, 475, 568
ScrFI CCNGG 4 cut(s) 81, 337, 564, 582
SetI ASST 7 cut(s) 56, 70, 138, 296, 455, 469, 474
SfoI GGCGCC 1 cut(s) 238
SfuI TTCGAA 2 cut(s) 546, 552
SmlI CTYRAG 2 cut(s) 231, 439
SmoI CTYRAG 2 cut(s) 231, 439
Sse9I AATT 3 cut(s) 7, 27, 548
SsiI CCGC 1 cut(s) 143
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 4 cut(s) 79, 335, 562, 580
TaaI ACNGT 2 cut(s) 407, 423
TaqI TCGA 3 cut(s) 222, 546, 552
TasI AATT 3 cut(s) 7, 27, 548
Tru1I TTAA 2 cut(s) 26, 522
Tru9I TTAA 2 cut(s) 26, 522
TscAI CASTG 1 cut(s) 400
TseI GCWGC 4 cut(s) 136, 149, 281, 387
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 1 cut(s) 400
XapI RAATTY 1 cut(s) 548
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.