Rmu_sc0004296.1_g000008
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004296.1
OG0002896
Physical Location & Seq
Reverse (-)
31489 .. 32687
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004296.1_g000008.1.cds

Sequence Viewer

Length: 675 bp
atgggaagagctccatgctgtgacaaatctaaagtgaaaagaggaccatggtctccagaagaagacgccaccctcaagaactacctccacgaacatggcaccactggcaattggattactctcccaaccagagcaggacgaacagataatgatgtgaaaaactattggaacacaaagttgaagaaaaagctgctggctgttgctgccagaaacaacattgtggctactagacagacatgtgatcacaacattgctcagttttcagctccagttcctcccaaaatcgaaacccctcatggccccgagacttcatcttgtttaggtggcacattaccgtatgcagcgaacataagtttggtgcgtagttttgatcaaccaaagcaaacttttgaaccctggtgcaaaccgtgcaatcattctgattcaaaacctatggaagtttctgattttggcagcattagtgaaagtaacagtttcagtattccactatctcatcaggaagtttcaagtcttcggccagttcatccagttcggctcagctggatcagtaccattgctccttgtggtctggatatgaaggtatcaattacgttaacagctagcgagttccttatggacttcggattcgaaactcctcctggtgatcattttcttctgggtggctttggtcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

224

Amino Acids

24.68

Weight (kDa)

7.65

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AclWI GGATC 1 cut(s) 551
AcoI YGGCCR 1 cut(s) 515
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 550
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 4 cut(s) 181, 392, 426, 507
AjnI CCWGG 2 cut(s) 395, 637
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 5 cut(s) 11, 190, 266, 540, 599
AluI AGCT 5 cut(s) 11, 190, 266, 540, 599
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 57, 299
AlwI GGATC 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 302
AoxI GGCC 2 cut(s) 298, 515
ApeKI GCWGC 4 cut(s) 190, 203, 341, 453
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
AspS9I GGNCC 2 cut(s) 44, 299
AsuHPI GGTGA 1 cut(s) 653
AsuII TTCGAA 1 cut(s) 627
AsuNHI GCTAGC 1 cut(s) 599
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 69, 503
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 4 cut(s) 177, 190, 353, 465
BciT130I CCWGG 2 cut(s) 397, 639
BclI TGATCA 3 cut(s) 241, 370, 643
BcoDI GTCTC 2 cut(s) 57, 299
BfaI CTAG 2 cut(s) 228, 600
BisI GCNGC 4 cut(s) 191, 204, 342, 454
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 4 cut(s) 192, 205, 343, 455
Bme1390I CCNGG 2 cut(s) 397, 639
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 44, 299
BmiI GGNNCC 2 cut(s) 100, 301
BmrFI CCNGG 2 cut(s) 397, 639
BmtI GCTAGC 1 cut(s) 603
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 2 cut(s) 69, 503
BpmI CTGGAG 2 cut(s) 39, 252
Bpu1102I GCTNAGC 1 cut(s) 536
Bpu14I TTCGAA 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 47, 395
BsaXI ACNNNNNCTCC 2 cut(s) 541, 571
Bse1I ACTGG 4 cut(s) 109, 269, 518, 527
Bse3DI GCAATG 2 cut(s) 249, 552
BseBI CCWGG 2 cut(s) 397, 639
BseDI CCNNGG 2 cut(s) 47, 395
BseGI GGATG 1 cut(s) 523
BseMI GCAATG 2 cut(s) 249, 552
BseMII CTCAG 2 cut(s) 269, 550
BseNI ACTGG 4 cut(s) 109, 269, 518, 527
BseRI GAGGAG 1 cut(s) 624
BseXI GCAGC 4 cut(s) 177, 190, 353, 465
BshFI GGCC 2 cut(s) 300, 517
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 302
BsmAI GTCTC 2 cut(s) 57, 299
BsnI GGCC 2 cut(s) 300, 517
Bso31I GGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 627
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 4 cut(s) 241, 370, 543, 643
Bsp1720I GCTNAGC 1 cut(s) 536
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 2 cut(s) 300, 517
BspCNI CTCAG 2 cut(s) 268, 549
BspLI GGNNCC 2 cut(s) 100, 301
BspOI GCTAGC 1 cut(s) 603
BspPI GGATC 1 cut(s) 551
BspT104I TTCGAA 1 cut(s) 627
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 2 cut(s) 249, 552
BsrI ACTGG 4 cut(s) 109, 269, 518, 527
BssECI CCNNGG 2 cut(s) 47, 395
BssMI GATC 4 cut(s) 241, 370, 543, 643
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 397, 639
Bst4CI ACNGT 3 cut(s) 336, 408, 473
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 408
BstBI TTCGAA 1 cut(s) 627
BstC8I GCNNGC 2 cut(s) 195, 601
BstDEI CTNAG 2 cut(s) 255, 536
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 523
BstKTI GATC 4 cut(s) 244, 373, 546, 646
BstMAI GTCTC 2 cut(s) 57, 299
BstMBI GATC 4 cut(s) 241, 370, 543, 643
BstMWI GCNNNNNNNGC 3 cut(s) 105, 203, 408
BstNI CCWGG 2 cut(s) 397, 639
BstNSI RCATGY 1 cut(s) 240
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 395, 637
BstV1I GCAGC 4 cut(s) 177, 190, 353, 465
BstV2I GAAGAC 2 cut(s) 69, 503
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 2 cut(s) 300, 517
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 523
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 195, 601
Cfr13I GGNCC 2 cut(s) 44, 299
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 549
CviAII CATG 5 cut(s) 15, 48, 95, 237, 296
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 2 cut(s) 255, 536
DpnI GATC 4 cut(s) 243, 372, 545, 645
DpnII GATC 4 cut(s) 241, 370, 543, 643
EaeI YGGCCR 1 cut(s) 515
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 395, 637
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 18, 51, 98, 240, 299
FatI CATG 5 cut(s) 14, 47, 94, 236, 295
FbaI TGATCA 3 cut(s) 241, 370, 643
Fnu4HI GCNGC 4 cut(s) 191, 204, 342, 454
FokI GGATG 1 cut(s) 510
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 4 cut(s) 191, 204, 342, 454
FspBI CTAG 2 cut(s) 228, 600
GluI GCNGC 4 cut(s) 191, 204, 342, 454
GsuI CTGGAG 2 cut(s) 39, 252
HaeIII GGCC 2 cut(s) 300, 517
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 5 cut(s) 18, 51, 98, 240, 299
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HinfI GANTC 2 cut(s) 422, 624
HpaI GTTAAC 1 cut(s) 594
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 1 cut(s) 594
Hpy188I TCNGA 3 cut(s) 421, 445, 623
Hpy188III TCNNGA 4 cut(s) 56, 76, 497, 569
Hpy8I GTNNAC 1 cut(s) 594
HpyAV CCTTC 1 cut(s) 571
HpyCH4III ACNGT 3 cut(s) 336, 408, 473
HpyCH4IV ACGT 1 cut(s) 590
HpyCH4V TGCA 3 cut(s) 341, 402, 411
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 203, 408
HpyF3I CTNAG 2 cut(s) 255, 536
HpySE526I ACGT 1 cut(s) 590
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 5 cut(s) 18, 51, 98, 240, 299
Ksp22I TGATCA 3 cut(s) 241, 370, 643
KspAI GTTAAC 1 cut(s) 594
Kzo9I GATC 4 cut(s) 241, 370, 543, 643
LmnI GCTCC 3 cut(s) 16, 271, 562
Lsp1109I GCAGC 4 cut(s) 177, 190, 353, 465
MaeI CTAG 2 cut(s) 228, 600
MaeII ACGT 1 cut(s) 590
MaeIII GTNAC 2 cut(s) 20, 467
MalI GATC 4 cut(s) 243, 372, 545, 645
MboI GATC 4 cut(s) 241, 370, 543, 643
MboII GAAGA 6 cut(s) 18, 71, 74, 193, 503, 644
MfeI CAATTG 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 109, 585
MnlI CCTC 6 cut(s) 35, 83, 95, 285, 303, 645
MseI TTAA 1 cut(s) 593
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 540
MspR9I CCNGG 2 cut(s) 397, 639
MunI CAATTG 1 cut(s) 109
MvaI CCWGG 2 cut(s) 397, 639
MwoI GCNNNNNNNGC 3 cut(s) 105, 203, 408
NcoI CCATGG 1 cut(s) 47
NdeII GATC 4 cut(s) 241, 370, 543, 643
NheI GCTAGC 1 cut(s) 599
NlaIII CATG 5 cut(s) 18, 51, 98, 240, 299
NlaIV GGNNCC 2 cut(s) 100, 301
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 240
NspV TTCGAA 1 cut(s) 627
PciI ACATGT 1 cut(s) 236
PfeI GAWTC 2 cut(s) 422, 624
PkrI GCNGC 4 cut(s) 192, 205, 343, 455
PscI ACATGT 1 cut(s) 236
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 395, 637
PspGI CCWGG 2 cut(s) 395, 637
PspN4I GGNNCC 2 cut(s) 100, 301
PspPI GGNCC 2 cut(s) 44, 299
PvuII CAGCTG 1 cut(s) 540
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 593
SatI GCNGC 4 cut(s) 191, 204, 342, 454
Sau3AI GATC 4 cut(s) 241, 370, 543, 643
Sau96I GGNCC 2 cut(s) 44, 299
ScrFI CCNGG 2 cut(s) 397, 639
SduI GDGCHC 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 627
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 109, 585
SspMI CTAG 2 cut(s) 228, 600
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 395, 637
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 336, 408, 473
TaiI ACGT 1 cut(s) 593
TaqI TCGA 2 cut(s) 285, 627
TasI AATT 2 cut(s) 109, 585
TfiI GAWTC 2 cut(s) 422, 624
Tru1I TTAA 1 cut(s) 593
Tru9I TTAA 1 cut(s) 593
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 4 cut(s) 190, 203, 341, 453
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 300, 512, 590
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 44
XceI RCATGY 1 cut(s) 240
XspI CTAG 2 cut(s) 228, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.