Rh2DG070400
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002896
Physical Location & Seq
Forward (+)
5435739 .. 5437645
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG070400.1

Sequence Viewer

Length: 822 bp
ATGGGAAGAGCTCCATGCTGTGACAAATCTAAAGTGAAAAGAGGACCATGGTCTCCCGAAGAAGACGCCACCCTCAAGAACTACCTCCACGAACATGGCACCACTGGCAATTGGATTACTCTACCAACCAAAGCAGGCCTGAATCGTTGCGGTAAGAGTTGTCGTTTGAGATGGCTGAACTATCTTAGGCCAGACATCAAGCGTGGTACTTTCACGGAGATAGAAGACAATGTTATCTGCACTCTCTTTAGAAGCATTGGAAGCAGGTGGTCTGTCATAGCTTCTCAACTGCCAGGACGAACAGATAATGATGTGAAAAACTATTGGAACACAAAGTTGAAGAAAAAGCTGCTGGCGGTTGCTGCAAGAAATAACATTGTGGCTGCTAGACGGACATGTGATCACAACATTGCTGATCAGTTTTCAGCTCCAGTTCCTCCCAAAATCGAAACCCCTCATGGCCCCAAGACTTCATCTTGTTTAGGTGGCACATTACCATATGCAGCGAACATAAGTTTGGTGCATAGTTTTGATCAACCAAAGCAAACTTTTGAACCCTGGTGCAATCATTCTGATTCAAAGCCTATGGAAGTTTCTGATTTTGGCAGCACTAGTGAAAGTAACAGTTTCAGTATTCCACTATCTCATCAGGAAGTTTCAAGGCTTCCCAGTTCATCCAGTTTGGCTCAGCTGGATCAGTACCATTGCTCCTTGTGGTCTGGACATGAAGGTATCAATTACGTTAACAGCGAGTTCCTTATGGACTTCGGATTCGAAACTCCTTCTGCTGATCAGTTTCTTCTGGGTGGCTTTGGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

273

Amino Acids

30.42

Weight (kDa)

8.34

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 1.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 3.8e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 111 6.7e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 2 cut(s) 150, 356
AclWI GGATC 1 cut(s) 702
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 208, 701
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 4 cut(s) 340, 554, 579, 660
AhlI ACTAGT 1 cut(s) 611
AjnI CCWGG 2 cut(s) 292, 557
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 5 cut(s) 11, 281, 349, 428, 691
AluI AGCT 5 cut(s) 11, 281, 349, 428, 691
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 702
AoxI GGCC 3 cut(s) 136, 188, 460
ApeKI GCWGC 5 cut(s) 349, 362, 383, 503, 606
ArsI GACNNNNNNTTYG 2 cut(s) 755, 787
AspS9I GGNCC 2 cut(s) 44, 461
AsuII TTCGAA 1 cut(s) 774
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 69, 231
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 5 cut(s) 336, 349, 370, 515, 618
BccI CCATC 1 cut(s) 165
BciT130I CCWGG 2 cut(s) 294, 559
BclI TGATCA 4 cut(s) 400, 415, 532, 790
BcoDI GTCTC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 2 cut(s) 387, 612
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 5 cut(s) 350, 363, 384, 504, 607
BlpI GCTNAGC 1 cut(s) 687
BlsI GCNGC 5 cut(s) 351, 364, 385, 505, 608
Bme1390I CCNGG 2 cut(s) 294, 559
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 44, 461
BmiI GGNNCC 2 cut(s) 100, 463
BmrFI CCNGG 2 cut(s) 294, 559
BmrI ACTGGG 1 cut(s) 663
BmuI ACTGGG 1 cut(s) 663
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 2 cut(s) 69, 231
BpmI CTGGAG 1 cut(s) 414
Bpu1102I GCTNAGC 1 cut(s) 687
Bpu14I TTCGAA 1 cut(s) 774
BpuEI CTTGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 47, 557
BsaXI ACNNNNNCTCC 2 cut(s) 692, 722
Bse1I ACTGG 4 cut(s) 109, 431, 669, 678
Bse3DI GCAATG 2 cut(s) 408, 703
BseBI CCWGG 2 cut(s) 294, 559
BseDI CCNNGG 2 cut(s) 47, 557
BseGI GGATG 1 cut(s) 674
BseMI GCAATG 2 cut(s) 408, 703
BseMII CTCAG 1 cut(s) 701
BseNI ACTGG 4 cut(s) 109, 431, 669, 678
BseXI GCAGC 5 cut(s) 336, 349, 370, 515, 618
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 3 cut(s) 138, 190, 462
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 3 cut(s) 138, 190, 462
Bso31I GGTCTC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 774
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 5 cut(s) 400, 415, 532, 694, 790
Bsp1720I GCTNAGC 1 cut(s) 687
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 150, 356
BspANI GGCC 3 cut(s) 138, 190, 462
BspCNI CTCAG 1 cut(s) 700
BspLI GGNNCC 2 cut(s) 100, 463
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 702
BspT104I TTCGAA 1 cut(s) 774
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 2 cut(s) 408, 703
BsrI ACTGG 4 cut(s) 109, 431, 669, 678
BssECI CCNNGG 2 cut(s) 47, 557
BssMI GATC 5 cut(s) 400, 415, 532, 694, 790
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 294, 559
Bst4CI ACNGT 1 cut(s) 626
BstACI GRCGYC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 774
BstC8I GCNNGC 2 cut(s) 136, 354
BstDEI CTNAG 2 cut(s) 185, 687
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 674
BstKTI GATC 5 cut(s) 403, 418, 535, 697, 793
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 5 cut(s) 400, 415, 532, 694, 790
BstMWI GCNNNNNNNGC 3 cut(s) 105, 261, 362
BstNI CCWGG 2 cut(s) 294, 559
BstNSI RCATGY 1 cut(s) 399
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 292, 557
BstV1I GCAGC 5 cut(s) 336, 349, 370, 515, 618
BstV2I GAAGAC 2 cut(s) 69, 231
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 3 cut(s) 138, 190, 462
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 674
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 136, 354
Cfr13I GGNCC 2 cut(s) 44, 461
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 207, 700
CviAII CATG 6 cut(s) 15, 48, 95, 396, 458, 725
CviQI GTAC 2 cut(s) 207, 700
DdeI CTNAG 2 cut(s) 185, 687
DpnI GATC 5 cut(s) 402, 417, 534, 696, 792
DpnII GATC 5 cut(s) 400, 415, 532, 694, 790
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 292, 557
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 6 cut(s) 18, 51, 98, 399, 461, 728
FatI CATG 6 cut(s) 14, 47, 94, 395, 457, 724
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 4 cut(s) 400, 415, 532, 790
Fnu4HI GCNGC 5 cut(s) 350, 363, 384, 504, 607
FokI GGATG 1 cut(s) 661
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 5 cut(s) 350, 363, 384, 504, 607
FspBI CTAG 2 cut(s) 387, 612
GluI GCNGC 5 cut(s) 350, 363, 384, 504, 607
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 3 cut(s) 138, 190, 462
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 6 cut(s) 18, 51, 98, 399, 461, 728
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HinfI GANTC 3 cut(s) 142, 575, 771
HpaI GTTAAC 1 cut(s) 745
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 3 cut(s) 574, 598, 770
Hpy188III TCNNGA 4 cut(s) 56, 76, 650, 720
Hpy8I GTNNAC 1 cut(s) 745
HpyAV CCTTC 2 cut(s) 722, 792
HpyCH4III ACNGT 1 cut(s) 626
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 5 cut(s) 240, 365, 503, 523, 564
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 261, 362
HpyF3I CTNAG 2 cut(s) 185, 687
HpySE526I ACGT 1 cut(s) 741
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 6 cut(s) 18, 51, 98, 399, 461, 728
Ksp22I TGATCA 4 cut(s) 400, 415, 532, 790
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 5 cut(s) 400, 415, 532, 694, 790
LmnI GCTCC 3 cut(s) 16, 433, 713
Lsp1109I GCAGC 5 cut(s) 336, 349, 370, 515, 618
MaeI CTAG 2 cut(s) 387, 612
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 2 cut(s) 20, 620
MalI GATC 5 cut(s) 402, 417, 534, 696, 792
MboI GATC 5 cut(s) 400, 415, 532, 694, 790
MboII GAAGA 6 cut(s) 18, 71, 74, 236, 352, 791
MfeI CAATTG 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 109, 736
MnlI CCTC 5 cut(s) 35, 83, 95, 447, 465
MseI TTAA 1 cut(s) 744
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 691
MspR9I CCNGG 2 cut(s) 294, 559
MunI CAATTG 1 cut(s) 109
MvaI CCWGG 2 cut(s) 294, 559
MwoI GCNNNNNNNGC 3 cut(s) 105, 261, 362
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 499
NdeII GATC 5 cut(s) 400, 415, 532, 694, 790
NlaIII CATG 6 cut(s) 18, 51, 98, 399, 461, 728
NlaIV GGNNCC 2 cut(s) 100, 463
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 399
NspV TTCGAA 1 cut(s) 774
PaqCI CACCTGC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 138
PciI ACATGT 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 747
PfeI GAWTC 3 cut(s) 142, 575, 771
PkrI GCNGC 5 cut(s) 351, 364, 385, 505, 608
PscI ACATGT 1 cut(s) 395
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 292, 557
PspGI CCWGG 2 cut(s) 292, 557
PspN4I GGNNCC 2 cut(s) 100, 463
PspPI GGNCC 2 cut(s) 44, 461
PvuII CAGCTG 1 cut(s) 691
RsaI GTAC 2 cut(s) 208, 701
RsaNI GTAC 2 cut(s) 207, 700
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 5 cut(s) 350, 363, 384, 504, 607
Sau3AI GATC 5 cut(s) 400, 415, 532, 694, 790
Sau96I GGNCC 2 cut(s) 44, 461
ScrFI CCNGG 2 cut(s) 294, 559
SduI GDGCHC 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 774
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 611
Sse9I AATT 2 cut(s) 109, 736
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 2 cut(s) 150, 356
SspMI CTAG 2 cut(s) 387, 612
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 292, 557
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 626
TaiI ACGT 1 cut(s) 744
TaqI TCGA 2 cut(s) 447, 774
TasI AATT 2 cut(s) 109, 736
TfiI GAWTC 3 cut(s) 142, 575, 771
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 5 cut(s) 349, 362, 383, 503, 606
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 462, 663, 741
TspGWI ACGGA 2 cut(s) 230, 406
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 44
XceI RCATGY 1 cut(s) 399
XspI CTAG 2 cut(s) 387, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.