Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Forward (+)

531028 .. 532938

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTCACCAGGAGGAAGGATGGCCATTGGGTCTGAGACCAGTAAATGCAAGAATCGGAGGACTCACAAGAGGAACTCATCATCATCATCATCATGAACAAGTCTCTGCTGGTTCAATCTCCTTCAGCTCTCTTCTCTCTCCTTCTCCCTCATCTCAATCTTCCTCCGATCTTGATTCTCAGTCGATGGGATCATTTTTCCGCGATAGGAGCTACACACTAGGAAACCTAATCGGGATATCAAGCTTTCTAGAACTTTCAAGAAGATCAAACCGAACAAGGAATGATCAAACAGGCGCTGCTAGAAACCATCAACACCATAAGAATCTCAAAACTTACTACAAGCCATGGATTTTCTCTATATGTTCAAAACTAAGCACAAACGCCACTGTCATTTCCCATAACAGGATTATAAACGAAGAAAATGATGGCCGTAACAATGTGCAGTCTCTTGGACACTTCCTCATTATGGAGAGACGAGCTGTGGGATCAACCATAAGGTCCACACCGACACCGACACCGACTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.64

Weight (kDa)

10.32

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AccII	CGCG	1 cut(s)	204
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	2 cut(s)	199, 496
AcoI	YGGCCR	2 cut(s)	23, 430
AcuI	CTGAAG	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	405, 469
AgsI	TTSAA	3 cut(s)	117, 261, 369
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	4 cut(s)	129, 213, 246, 482
AluI	AGCT	4 cut(s)	129, 213, 246, 482
Alw26I	GTCTC	4 cut(s)	31, 109, 453, 469
AlwI	GGATC	2 cut(s)	199, 496
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	2 cut(s)	23, 430
ApeKI	GCWGC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	501
AvaII	GGWCC	1 cut(s)	501
BalI	TGGCCA	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	4 cut(s)	15, 181, 318, 422
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	11
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	4 cut(s)	31, 109, 453, 469
BfaI	CTAG	3 cut(s)	221, 251, 303
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	501
BmrFI	CCNGG	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 469
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	405, 469
BseMII	CTCAG	2 cut(s)	26, 194
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	25, 432
BslI	CCNNNNNNNGG	2 cut(s)	405, 469
BsmAI	GTCTC	4 cut(s)	31, 109, 453, 469
BsmBI	CGTCTC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	25, 432
Bso31I	GGTCTC	1 cut(s)	31
Bsp143I	GATC	5 cut(s)	169, 191, 266, 286, 488
Bsp19I	CCATGG	1 cut(s)	347
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	2 cut(s)	25, 432
BspCNI	CTCAG	2 cut(s)	27, 193
BspFNI	CGCG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	94
BspPI	GGATC	2 cut(s)	199, 496
BspTNI	GGTCTC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	5 cut(s)	169, 191, 266, 286, 488
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	35, 180, 374
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	5 cut(s)	172, 194, 269, 289, 491
BstMAI	GTCTC	4 cut(s)	31, 109, 453, 469
BstMBI	GATC	5 cut(s)	169, 191, 266, 286, 488
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	25, 432
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	387
CaiI	CAGNNNCTG	1 cut(s)	299
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	501
CviAII	CATG	2 cut(s)	95, 348
CviJI	RGCY	8 cut(s)	5, 25, 129, 213, 246, 346, 432, 482
CviKI_1	RGCY	8 cut(s)	5, 25, 129, 213, 246, 346, 432, 482
DdeI	CTNAG	3 cut(s)	35, 180, 374
DpnI	GATC	5 cut(s)	171, 193, 268, 288, 490
DpnII	GATC	5 cut(s)	169, 191, 266, 286, 488
EaeI	YGGCCR	2 cut(s)	23, 430
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	2 cut(s)	98, 351
FatI	CATG	2 cut(s)	94, 347
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	3 cut(s)	221, 251, 303
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	25, 432
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	98, 351
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	4 cut(s)	54, 63, 176, 325
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	3 cut(s)	36, 59, 169
Hpy188III	TCNNGA	5 cut(s)	95, 173, 235, 251, 261
Hpy8I	GTNNAC	1 cut(s)	504
HpyAV	CCTTC	3 cut(s)	11, 133, 153
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	2 cut(s)	50, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	3 cut(s)	35, 180, 374
Hsp92II	CATG	2 cut(s)	98, 351
HspAI	GCGC	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	169, 191, 266, 286, 488
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	5 cut(s)	23, 54, 96, 279, 391
Lsp1109I	GCAGC	1 cut(s)	286
MaeI	CTAG	3 cut(s)	221, 251, 303
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	5 cut(s)	171, 193, 268, 288, 490
MboI	GATC	5 cut(s)	169, 191, 266, 286, 488
MboII	GAAGA	4 cut(s)	125, 153, 276, 431
MlsI	TGGCCA	1 cut(s)	25
MluNI	TGGCCA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	7, 53, 65, 160, 175, 473
Mox20I	TGGCCA	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	25
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	5 cut(s)	169, 191, 266, 286, 488
NlaIII	CATG	2 cut(s)	98, 351
PagI	TCATGA	1 cut(s)	94
PfeI	GAWTC	3 cut(s)	54, 176, 325
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	501
PstNI	CAGNNNCTG	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	5 cut(s)	169, 191, 266, 286, 488
Sau96I	GGNCC	1 cut(s)	501
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	6 cut(s)	131, 215, 231, 248, 484, 503
SinI	GGWCC	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	93
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	3 cut(s)	221, 251, 303
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	185
TfiI	GAWTC	3 cut(s)	54, 176, 325
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	501
XbaI	TCTAGA	1 cut(s)	250
XspI	CTAG	3 cut(s)	221, 251, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.