Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Reverse (-)

30818660 .. 30821163

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35940.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTCATGAGCAGGAGGAAGGCTGGCCTCTGGGTTTGCAGCCAATGCATGTAAGAGTTGGGCTGGCTGCTCGAGACCGTGAAGTTTCTGGATCGGTGTCGTTCAATACTTTACTGACTGGCTCTCCCACCTCCACCACAGACTCTTCTTCCGATCTAGATACAGAGTCCACAGGGTCTTTCTTCCATGATAGAAGCATCACCCTCGGGAACCTTATAGGAATCAATAGCATTCTAGAGCTATCAAGAAGATCAATAAGAGGAAGAAAGACTGATCAGATTTGTAAGGACAAAAGTGGCAACAACAACAACAAAAACAGCACCAAGTTCAGATTGTGTTTCTTCTCTCTATGCTCAAGGGATAGTACAGATGGTGAGAATGTCAATAGTGCTAAAACTCCTCCATCCCTTGGCCATTTCCTTGCAGAAGAAAGAAGAGCAGCCATTGATGAATACAGAAGAAACCCTCAAATTTATGGACCAGATGATGAGCTTGCCATGGCTCAGCAGGCTGCTACAGAACCCAACTCCCTCTTTGTCAATGGCCAAGTGGCTCCTCCTCAGTCTAGTCCATGGTTTGATTCAGATGTTGACAGAAGAAAACCATTGCTATTTTCATGCATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.09

Weight (kDa)

5.6

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	410
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	2 cut(s)	412, 544
AcsI	RAATTY	1 cut(s)	471
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	2 cut(s)	241, 493
AluI	AGCT	2 cut(s)	241, 493
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	2 cut(s)	72, 206
AoxI	GGCC	3 cut(s)	26, 412, 544
ApeKI	GCWGC	4 cut(s)	40, 68, 440, 512
ApoI	RAATTY	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	193, 386
AvaI	CYCGRG	2 cut(s)	72, 206
AvaII	GGWCC	1 cut(s)	479
BalI	TGGCCA	2 cut(s)	414, 546
BbvI	GCAGC	4 cut(s)	52, 55, 452, 499
BccI	CCATC	2 cut(s)	365, 412
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	3 cut(s)	158, 236, 567
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	4 cut(s)	41, 69, 441, 513
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	4 cut(s)	42, 70, 442, 514
Bme18I	GGWCC	1 cut(s)	479
BmeT110I	CYCGRG	2 cut(s)	72, 206
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	212, 555
BmsI	GCATC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	340
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	4 cut(s)	205, 409, 498, 572
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	605
BseDI	CCNNGG	4 cut(s)	205, 409, 498, 572
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	2 cut(s)	518, 575
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	3 cut(s)	390, 546, 549
BseXI	GCAGC	4 cut(s)	52, 55, 452, 499
BshFI	GGCC	3 cut(s)	28, 414, 546
BsiHKCI	CYCGRG	2 cut(s)	72, 206
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	28, 414, 546
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	2 cut(s)	72, 206
Bsp143I	GATC	4 cut(s)	92, 154, 251, 274
Bsp1720I	GCTNAGC	1 cut(s)	504
Bsp19I	CCATGG	2 cut(s)	498, 572
BspANI	GGCC	3 cut(s)	28, 414, 546
BspCNI	CTCAG	2 cut(s)	517, 574
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	212, 555
BspPI	GGATC	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	4 cut(s)	205, 409, 498, 572
BssMI	GATC	4 cut(s)	92, 154, 251, 274
BssT1I	CCWWGG	3 cut(s)	409, 498, 572
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	151, 430
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstC8I	GCNNGC	4 cut(s)	26, 66, 495, 510
BstDEI	CTNAG	2 cut(s)	504, 561
BstDSI	CCRYGG	2 cut(s)	498, 572
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	4 cut(s)	95, 157, 254, 277
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	4 cut(s)	92, 154, 251, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 509
BstNSI	RCATGY	2 cut(s)	53, 625
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	4 cut(s)	52, 55, 452, 499
BsuRI	GGCC	3 cut(s)	28, 414, 546
BtgI	CCRYGG	2 cut(s)	498, 572
BtsCI	GGATG	1 cut(s)	404
Cac8I	GCNNGC	4 cut(s)	26, 66, 495, 510
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	7 cut(s)	8, 50, 188, 499, 573, 618, 622
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	2 cut(s)	504, 561
DpnI	GATC	4 cut(s)	94, 156, 253, 276
DpnII	GATC	4 cut(s)	92, 154, 251, 274
EaeI	YGGCCR	2 cut(s)	412, 544
Eam1104I	CTCTTC	2 cut(s)	151, 430
EarI	CTCTTC	2 cut(s)	151, 430
Eco130I	CCWWGG	3 cut(s)	409, 498, 572
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	479
Eco88I	CYCGRG	2 cut(s)	72, 206
EcoT14I	CCWWGG	3 cut(s)	409, 498, 572
EcoT22I	ATGCAT	2 cut(s)	51, 623
ErhI	CCWWGG	3 cut(s)	409, 498, 572
FaeI	CATG	7 cut(s)	11, 53, 191, 502, 576, 621, 625
FatI	CATG	7 cut(s)	7, 49, 187, 498, 572, 617, 621
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	41, 69, 441, 513
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	4 cut(s)	41, 69, 441, 513
FspBI	CTAG	3 cut(s)	158, 236, 567
GluI	GCNGC	4 cut(s)	41, 69, 441, 513
HaeIII	GGCC	3 cut(s)	28, 414, 546
Hin1II	CATG	7 cut(s)	11, 53, 191, 502, 576, 621, 625
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	4 cut(s)	143, 167, 222, 581
HphI	GGTGA	2 cut(s)	193, 386
Hpy166II	GTNNAC	2 cut(s)	171, 592
Hpy188I	TCNGA	4 cut(s)	154, 279, 332, 586
Hpy188III	TCNNGA	7 cut(s)	8, 74, 90, 158, 208, 236, 246
Hpy8I	GTNNAC	2 cut(s)	171, 592
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	4 cut(s)	40, 49, 425, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 509
HpyF3I	CTNAG	2 cut(s)	504, 561
Hsp92II	CATG	7 cut(s)	11, 53, 191, 502, 576, 621, 625
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	92, 154, 251, 274
LguI	GCTCTTC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	8 cut(s)	10, 17, 50, 75, 105, 159, 494, 495
Lsp1109I	GCAGC	4 cut(s)	52, 55, 452, 499
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	3 cut(s)	158, 236, 567
MalI	GATC	4 cut(s)	94, 156, 253, 276
MboI	GATC	4 cut(s)	92, 154, 251, 274
MlsI	TGGCCA	2 cut(s)	414, 546
MluCI	AATT	1 cut(s)	471
MluNI	TGGCCA	2 cut(s)	414, 546
MlyI	GAGTC	2 cut(s)	137, 176
Mox20I	TGGCCA	2 cut(s)	414, 546
Mph1103I	ATGCAT	2 cut(s)	51, 623
MscI	TGGCCA	2 cut(s)	414, 546
MslI	CAYNNNNRTG	1 cut(s)	622
Msp20I	TGGCCA	2 cut(s)	414, 546
Mva1269I	GAATGC	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	46, 509
NcoI	CCATGG	2 cut(s)	498, 572
NdeII	GATC	4 cut(s)	92, 154, 251, 274
NlaIII	CATG	7 cut(s)	11, 53, 191, 502, 576, 621, 625
NlaIV	GGNNCC	2 cut(s)	212, 555
NsiI	ATGCAT	2 cut(s)	51, 623
NspI	RCATGY	2 cut(s)	53, 625
PaeR7I	CTCGAG	1 cut(s)	72
PagI	TCATGA	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	430
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	222, 581
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	42, 70, 442, 514
PleI	GAGTC	2 cut(s)	137, 175
PpsI	GAGTC	2 cut(s)	137, 175
PspN4I	GGNNCC	2 cut(s)	212, 555
PspPI	GGNCC	1 cut(s)	479
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	622
SapI	GCTCTTC	1 cut(s)	430
SatI	GCNGC	4 cut(s)	41, 69, 441, 513
Sau3AI	GATC	4 cut(s)	92, 154, 251, 274
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	2 cut(s)	137, 176
SetI	ASST	4 cut(s)	134, 216, 243, 495
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	516
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	479
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	622
SmlI	CTYRAG	2 cut(s)	72, 355
SmoI	CTYRAG	2 cut(s)	72, 355
Sse9I	AATT	1 cut(s)	471
SspMI	CTAG	3 cut(s)	158, 236, 567
StyI	CCWWGG	3 cut(s)	409, 498, 572
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	471
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	222, 581
TseI	GCWGC	4 cut(s)	40, 68, 440, 512
TspDTI	ATGAA	2 cut(s)	465, 606
Van91I	CCANNNNNTGG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	471
XbaI	TCTAGA	2 cut(s)	157, 235
XceI	RCATGY	2 cut(s)	53, 625
XhoI	CTCGAG	1 cut(s)	72
XspI	CTAG	3 cut(s)	158, 236, 567
Zsp2I	ATGCAT	2 cut(s)	51, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.