Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Reverse (-)

33094927 .. 33095436

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG160600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCTCGTGAGCAGGAGGAAGGCTGGCCTCTGGGTTTGCAGCCAATGCATGTGAGAGTTGGGCTGGCTGCTCGAGACCGTGAAGTTTCTGGATCGGTGTCATTCAATACTTTACTAACTGGCTCTCCGACCTCCTCCACAGACTCTTCTTCGGATCTGGATACAGAGGTCAGTGCTGTAAATTACAGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

64

Amino Acids

6.85

Weight (kDa)

4.6

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	100, 162
AgsI	TTSAA	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	100, 162
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	40, 68
AvaI	CYCGRG	1 cut(s)	72
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BauI	CACGAG	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	52, 55
BciVI	GTATCC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	2 cut(s)	41, 69
BlsI	GCNGC	2 cut(s)	42, 70
BmeT110I	CYCGRG	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bse1I	ACTGG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	52, 55
BshFI	GGCC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	28
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	92, 154
BspANI	GGCC	1 cut(s)	28
BspPI	GGATC	2 cut(s)	100, 162
BspTNI	GGTCTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	92, 154
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	26, 66
BstKTI	GATC	2 cut(s)	95, 157
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	2 cut(s)	92, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	52, 55
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	26, 66
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	8 cut(s)	5, 24, 28, 43, 64, 68, 123, 192
CviKI_1	RGCY	8 cut(s)	5, 24, 28, 43, 64, 68, 123, 192
DpnI	GATC	2 cut(s)	94, 156
DpnII	GATC	2 cut(s)	92, 154
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	51
FaeI	CATG	1 cut(s)	53
FaiI	YATR	1 cut(s)	51
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	41, 69
Fsp4HI	GCNGC	2 cut(s)	41, 69
GluI	GCNGC	2 cut(s)	41, 69
HaeIII	GGCC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	129, 154
Hpy188III	TCNNGA	4 cut(s)	8, 74, 90, 158
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	2 cut(s)	40, 49
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	92, 154
LpnPI	CCDG	6 cut(s)	10, 17, 50, 75, 105, 143
Lsp1109I	GCAGC	2 cut(s)	52, 55
MalI	GATC	2 cut(s)	94, 156
MboI	GATC	2 cut(s)	92, 154
MboII	GAAGA	2 cut(s)	138, 141
MflI	RGATCY	1 cut(s)	154
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	6 cut(s)	10, 39, 142, 145, 160, 182
Mph1103I	ATGCAT	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	2 cut(s)	92, 154
NlaIII	CATG	1 cut(s)	53
NsiI	ATGCAT	1 cut(s)	51
NspI	RCATGY	1 cut(s)	53
PaeR7I	CTCGAG	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	42, 70
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	154
SatI	GCNGC	2 cut(s)	41, 69
Sau3AI	GATC	2 cut(s)	92, 154
SchI	GAGTC	1 cut(s)	137
SetI	ASST	2 cut(s)	134, 171
Sfr274I	CTCGAG	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	181
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	2 cut(s)	40, 68
TspRI	CASTG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.