Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Forward (+)

8567630 .. 8569858

Gene Structure 2229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGTAACCAGGATGAAGGGTGGCCTTTGGGACTGAGACCGCTTAATGCAAGAGTTGGGTTGATGAGAAGAGAGTTATCTGCTGGTTCAGCTTCGTTTAGTACTTTGATCACTGGCTCTCCTACTTCTACTGCTTCTTCAGATCTTGATACAGAGTCAACTGGGTCTCTATTACATGACAATGGCATCACACTTGGGAGCCTCATTGGAGTGTCTAGCATTTTCGACCTCTCTCGAAGATCAAGCATGGGAAGAAGGACAATAGAAGCCTCGAAGAACAAGAAGAATTGCAAAACCAAGTATTGGTTGTTTTCACTCTGCTCCAAGCTGACCCCTGAAGATGTGGATGTGAGTAATACTCCTTCTCTAGGTCACTTTCTCGAGGCAGAAAGAAGAGGAAGTACCAACACTAACAGAAGAAATCCAAGACCAACCGAATACGGACCTGACGATTTCTCACCTGCTGTGCCGGTTTCAGAAGCAAACGGGCTATTTGTGGATGGTGTAGTTGCAGCTGCTCAGCCTTCAAGTGCTTCAGGGAGTGCAGATAATGGTGGAACAATATCAAACAATGAGGAGTTAATAGAATATGGAAACGGATTCAGAACCCCATTGCTGGTTTCATGTATGTGTGGACAACTAGTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

22.95

Weight (kDa)

5.75

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	469
AccB7I	CCANNNNNTGG	1 cut(s)	303
AciI	CCGC	1 cut(s)	41
AcuI	CTGAAG	3 cut(s)	123, 357, 519
AfaI	GTAC	2 cut(s)	103, 403
AfiI	CCNNNNNNNGG	3 cut(s)	303, 368, 616
AgsI	TTSAA	1 cut(s)	528
AhlI	ACTAGT	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	92, 328, 515
AluI	AGCT	3 cut(s)	92, 328, 515
Alw26I	GTCTC	2 cut(s)	31, 171
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	512, 515
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	450
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	443
BarI	GAAGNNNNNNTAC	4 cut(s)	346, 378, 385, 417
BbvI	GCAGC	2 cut(s)	502, 524
BccI	CCATC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	11
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	31, 171
BcuI	ACTAGT	1 cut(s)	640
BfaI	CTAG	3 cut(s)	216, 368, 641
BfuAI	ACCTGC	1 cut(s)	469
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	2 cut(s)	513, 516
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	2 cut(s)	514, 517
BmcAI	AGTACT	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
Bpu1102I	GCTNAGC	1 cut(s)	519
BsaI	GGTCTC	2 cut(s)	31, 171
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	3 cut(s)	303, 368, 616
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	118, 166
Bse3DI	GCAATG	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	11
BseGI	GGATG	3 cut(s)	19, 352, 505
BseLI	CCNNNNNNNGG	3 cut(s)	303, 368, 616
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	2 cut(s)	26, 533
BseNI	ACTGG	2 cut(s)	118, 166
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	502, 524
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	303, 368, 616
BsmAI	GTCTC	2 cut(s)	31, 171
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	25
Bso31I	GGTCTC	2 cut(s)	31, 171
BsoBI	CYCGRG	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	108, 142, 239
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	27, 532
BspLI	GGNNCC	1 cut(s)	200
BspMI	ACCTGC	1 cut(s)	469
BspTNI	GGTCTC	2 cut(s)	31, 171
BsrDI	GCAATG	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	118, 166
BssAI	RCCGGY	1 cut(s)	469
BssMI	GATC	3 cut(s)	108, 142, 239
Bst2UI	CCWGG	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	64, 388
BstDEI	CTNAG	2 cut(s)	35, 519
BstEII	GGTNACC	1 cut(s)	5
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	19, 352, 505
BstKTI	GATC	3 cut(s)	111, 145, 242
BstMAI	GTCTC	2 cut(s)	31, 171
BstMBI	GATC	3 cut(s)	108, 142, 239
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	502, 524
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	19, 352, 505
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	102, 402
CviAII	CATG	3 cut(s)	176, 247, 624
CviJI	RGCY	9 cut(s)	25, 92, 117, 201, 269, 328, 490, 515, 523
CviKI_1	RGCY	9 cut(s)	25, 92, 117, 201, 269, 328, 490, 515, 523
CviQI	GTAC	2 cut(s)	102, 402
DdeI	CTNAG	2 cut(s)	35, 519
DpnI	GATC	3 cut(s)	110, 144, 241
DpnII	GATC	3 cut(s)	108, 142, 239
Eam1104I	CTCTTC	2 cut(s)	64, 388
EarI	CTCTTC	2 cut(s)	64, 388
Eco31I	GGTCTC	2 cut(s)	31, 171
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	3 cut(s)	123, 357, 519
Eco88I	CYCGRG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	5
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	9
FaeI	CATG	3 cut(s)	179, 250, 627
FaiI	YATR	5 cut(s)	177, 248, 591, 625, 629
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	3 cut(s)	175, 246, 623
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	513, 516
FokI	GGATG	3 cut(s)	26, 359, 512
Fsp4HI	GCNGC	2 cut(s)	513, 516
FspBI	CTAG	3 cut(s)	216, 368, 641
GluI	GCNGC	2 cut(s)	513, 516
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	3 cut(s)	179, 250, 627
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	155, 600
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	450
Hpy166II	GTNNAC	2 cut(s)	159, 635
Hpy188I	TCNGA	3 cut(s)	142, 478, 605
Hpy188III	TCNNGA	3 cut(s)	146, 234, 380
Hpy8I	GTNNAC	2 cut(s)	159, 635
HpyAV	CCTTC	4 cut(s)	11, 249, 372, 534
HpyCH4V	TGCA	4 cut(s)	50, 291, 512, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	35, 519
Hsp92II	CATG	3 cut(s)	179, 250, 627
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	108, 142, 239
LmnI	GCTCC	2 cut(s)	198, 326
Lsp1109I	GCAGC	2 cut(s)	502, 524
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	3 cut(s)	216, 368, 641
MaeIII	GTNAC	2 cut(s)	5, 371
MalI	GATC	3 cut(s)	110, 144, 241
MboI	GATC	3 cut(s)	108, 142, 239
MboII	GAAGA	9 cut(s)	81, 129, 249, 264, 286, 295, 350, 405, 429
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	6 cut(s)	212, 239, 280, 376, 389, 568
MseI	TTAA	3 cut(s)	45, 581, 645
MslI	CAYNNNNRTG	3 cut(s)	180, 209, 628
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	3 cut(s)	108, 142, 239
NlaIII	CATG	3 cut(s)	179, 250, 627
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	380
PaqCI	CACCTGC	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	600
PflMI	CCANNNNNTGG	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	514, 517
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	9
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	103, 403
RsaNI	GTAC	2 cut(s)	102, 402
RseI	CAYNNNNRTG	3 cut(s)	180, 209, 628
SaqAI	TTAA	3 cut(s)	45, 581, 645
SatI	GCNGC	2 cut(s)	513, 516
Sau3AI	GATC	3 cut(s)	108, 142, 239
Sau96I	GGNCC	1 cut(s)	443
ScaI	AGTACT	1 cut(s)	103
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	7 cut(s)	94, 231, 330, 373, 448, 463, 517
SfaNI	GCATC	1 cut(s)	195
Sfr274I	CTCGAG	1 cut(s)	380
SinI	GGWCC	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	380
SmiMI	CAYNNNNRTG	3 cut(s)	180, 209, 628
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SpeI	ACTAGT	1 cut(s)	640
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	3 cut(s)	216, 368, 641
StyD4I	CCNGG	1 cut(s)	9
TaqI	TCGA	4 cut(s)	225, 235, 272, 381
TasI	AATT	1 cut(s)	286
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	600
Tru1I	TTAA	3 cut(s)	45, 581, 645
Tru9I	TTAA	3 cut(s)	45, 581, 645
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	2 cut(s)	512, 515
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	30, 612
TspGWI	ACGGA	2 cut(s)	456, 612
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	366
XhoI	CTCGAG	1 cut(s)	380
XspI	CTAG	3 cut(s)	216, 368, 641
ZrmI	AGTACT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.