Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Forward (+)

9776253 .. 9778889

Gene Structure 2637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1110500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTCAGCAACAACAGCAGGAAGGGTGGCCACTGGGATTGCAGCCATTGCATGTGAGAGTTGGGCTGGCTGCTTCAAACCATGAATTTTCTGGGTCAGTTTCTTTCAACACCTTACTCACTGGTTCTCCAACTTCCTCCACAGATTCCTCATCAGATCTGGACACAGAGTCCACAGGGTCTTTTTTCCATGATAGGAGCATTACGCTCGGGAGCCTTATAGGAATCAATAACATCCTAGAGCTCTCAAGAAGATCTCTAAGAGGAAGAAAAACCGATCATCAGGCCACCAAGGACAGGAAGACGAACAACAACGACAGCAACAACACCAAATTCAGACTCTGTTTTCTCTCTTTATGCTCCAAAGACAGTACAGATGATGAGAACGTGCGCAATCATCCGCCATCTCTCGGCCACTTTCTTGCGGCTGAGAGACAAGCGGCCAATGAAAACTACAGAACAAACCCTCCAATTTACGGACCAGACGACGAGCTTGCCCTAGCTGAGCATCATCAGCCTGCTAGAGAATCAAATAACTCACTCTTTGTTGATGGTCAAGTTGCTCCTCCCCAATCTAGTCCACGGCTTGGTTCAGATCATGTCGACCAAAGAAAATCAATGTTGTTTTCATGCATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.49

Weight (kDa)

5.96

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	3 cut(s)	401, 425, 440
AcoI	YGGCCR	3 cut(s)	29, 412, 441
AcsI	RAATTY	2 cut(s)	86, 332
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	4 cut(s)	297, 410, 476, 587
AgsI	TTSAA	2 cut(s)	78, 109
AhdI	GACNNNNNGTC	1 cut(s)	169
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	3 cut(s)	244, 493, 503
AluI	AGCT	3 cut(s)	244, 493, 503
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	427
AlwNI	CAGNNNCTG	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	4 cut(s)	29, 285, 412, 441
ApeKI	GCWGC	2 cut(s)	43, 71
ApoI	RAATTY	2 cut(s)	86, 332
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	479
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	479
BalI	TGGCCA	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	55, 58
BccI	CCATC	2 cut(s)	412, 545
BceAI	ACGGC	1 cut(s)	599
BcgI	CGANNNNNNTGC	4 cut(s)	190, 224, 476, 510
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	4 cut(s)	239, 500, 522, 576
BfmI	CTRYAG	1 cut(s)	454
BglII	AGATCT	2 cut(s)	157, 254
BisI	GCNGC	4 cut(s)	44, 72, 426, 441
BlpI	GCTNAGC	2 cut(s)	6, 504
BlsI	GCNGC	4 cut(s)	45, 73, 427, 442
Bme18I	GGWCC	1 cut(s)	479
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	215
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	308
Bpu1102I	GCTNAGC	2 cut(s)	6, 504
BpuEI	CTTGAG	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	291, 581
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 142, 451, 481
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 410, 476, 587
Bse1I	ACTGG	2 cut(s)	39, 127
Bse3DI	GCAATG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	291, 581
BseGI	GGATG	2 cut(s)	234, 397
BseLI	CCNNNNNNNGG	4 cut(s)	297, 410, 476, 587
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	3 cut(s)	20, 420, 495
BseNI	ACTGG	2 cut(s)	39, 127
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	2 cut(s)	55, 58
BshFI	GGCC	4 cut(s)	31, 287, 414, 443
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	209
BslI	CCNNNNNNNGG	4 cut(s)	297, 410, 476, 587
BsmAI	GTCTC	1 cut(s)	427
BsnI	GGCC	4 cut(s)	31, 287, 414, 443
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	157, 254, 277, 595
Bsp1720I	GCTNAGC	2 cut(s)	6, 504
BspACI	CCGC	3 cut(s)	401, 425, 440
BspANI	GGCC	4 cut(s)	31, 287, 414, 443
BspCNI	CTCAG	3 cut(s)	19, 421, 496
BspLI	GGNNCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	39, 127
BssECI	CCNNGG	2 cut(s)	291, 581
BssMI	GATC	4 cut(s)	157, 254, 277, 595
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	3 cut(s)	69, 495, 519
BstDEI	CTNAG	4 cut(s)	6, 260, 429, 504
BstDSI	CCRYGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	234, 397
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	4 cut(s)	160, 257, 280, 598
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	4 cut(s)	157, 254, 277, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 49, 514
BstNSI	RCATGY	2 cut(s)	56, 637
BstSFI	CTRYAG	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	55, 58
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	2 cut(s)	157, 254
BstYI	RGATCY	2 cut(s)	157, 254
BsuRI	GGCC	4 cut(s)	31, 287, 414, 443
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	234, 397
BtsIMutI	CAGTG	2 cut(s)	32, 120
Cac8I	GCNNGC	3 cut(s)	69, 495, 519
CaiI	CAGNNNCTG	1 cut(s)	342
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	372
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	6 cut(s)	53, 83, 191, 599, 630, 634
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	4 cut(s)	6, 260, 429, 504
DpnI	GATC	4 cut(s)	159, 256, 279, 597
DpnII	GATC	4 cut(s)	157, 254, 277, 595
DriI	GACNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	3 cut(s)	29, 412, 441
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	390
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	635
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	6 cut(s)	56, 86, 194, 602, 633, 637
FaiI	YATR	8 cut(s)	54, 84, 192, 221, 358, 600, 631, 635
FatI	CATG	6 cut(s)	52, 82, 190, 598, 629, 633
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	4 cut(s)	44, 72, 426, 441
FokI	GGATG	2 cut(s)	221, 384
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	44, 72, 426, 441
FspBI	CTAG	4 cut(s)	239, 500, 522, 576
FspI	TGCGCA	1 cut(s)	392
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	4 cut(s)	44, 72, 426, 441
HaeIII	GGCC	4 cut(s)	31, 287, 414, 443
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	6 cut(s)	56, 86, 194, 602, 633, 637
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	5 cut(s)	146, 170, 225, 339, 527
Hpy166II	GTNNAC	3 cut(s)	174, 581, 604
Hpy188I	TCNGA	3 cut(s)	157, 338, 595
Hpy188III	TCNNGA	3 cut(s)	161, 211, 249
Hpy8I	GTNNAC	3 cut(s)	174, 581, 604
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	43, 52, 633
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 49, 514
HpyF3I	CTNAG	4 cut(s)	6, 260, 429, 504
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	6 cut(s)	56, 86, 194, 602, 633, 637
HspAI	GCGC	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	157, 254, 277, 595
LmnI	GCTCC	4 cut(s)	198, 213, 365, 568
Lsp1109I	GCAGC	2 cut(s)	55, 58
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	4 cut(s)	239, 500, 522, 576
MaeII	ACGT	1 cut(s)	387
MalI	GATC	4 cut(s)	159, 256, 279, 597
MboI	GATC	4 cut(s)	157, 254, 277, 595
MboII	GAAGA	3 cut(s)	264, 279, 313
MflI	RGATCY	2 cut(s)	157, 254
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	3 cut(s)	86, 332, 471
MluNI	TGGCCA	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	179, 333
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	5 cut(s)	148, 160, 257, 477, 576
Mox20I	TGGCCA	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	635
MscI	TGGCCA	1 cut(s)	31
MslI	CAYNNNNRTG	1 cut(s)	634
Msp20I	TGGCCA	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	16, 49, 514
NdeII	GATC	4 cut(s)	157, 254, 277, 595
NlaIII	CATG	6 cut(s)	56, 86, 194, 602, 633, 637
NlaIV	GGNNCC	1 cut(s)	215
NmeAIII	GCCGAG	1 cut(s)	390
NsbI	TGCGCA	1 cut(s)	392
NsiI	ATGCAT	1 cut(s)	635
NspI	RCATGY	2 cut(s)	56, 637
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PfeI	GAWTC	3 cut(s)	146, 225, 527
PflMI	CCANNNNNTGG	1 cut(s)	587
PkrI	GCNGC	4 cut(s)	45, 73, 427, 442
PleI	GAGTC	2 cut(s)	178, 333
PpsI	GAGTC	2 cut(s)	178, 333
Psp124BI	GAGCTC	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	342
PsuI	RGATCY	2 cut(s)	157, 254
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	634
SacI	GAGCTC	1 cut(s)	246
SalI	GTCGAC	1 cut(s)	602
SatI	GCNGC	4 cut(s)	44, 72, 426, 441
Sau3AI	GATC	4 cut(s)	157, 254, 277, 595
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	2 cut(s)	179, 333
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	5 cut(s)	116, 246, 390, 495, 505
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	454
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	3 cut(s)	86, 332, 471
SsiI	CCGC	3 cut(s)	401, 425, 440
SspMI	CTAG	4 cut(s)	239, 500, 522, 576
SstI	GAGCTC	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	603
TasI	AATT	3 cut(s)	86, 332, 471
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	2 cut(s)	428, 443
TfiI	GAWTC	3 cut(s)	146, 225, 527
TscAI	CASTG	2 cut(s)	39, 127
TseI	GCWGC	2 cut(s)	43, 71
TspDTI	ATGAA	3 cut(s)	99, 462, 618
TspGWI	ACGGA	1 cut(s)	492
TspRI	CASTG	2 cut(s)	39, 127
Van91I	CCANNNNNTGG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	2 cut(s)	86, 332
XceI	RCATGY	2 cut(s)	56, 637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	4 cut(s)	239, 500, 522, 576
Zsp2I	ATGCAT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.