Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Reverse (-)

70378916 .. 70380804

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG437000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTCGTGAGCAGGAGGAAGGCTGGCCTCTGGGTTTGCAGCCAATGCATGTGAGAGTTGGGCTGGCTGCTCGAGACCGTGAAGTTTCTGGATCGGTGTCATTCAATACTTTACTAACTGGCTCTCCGACCTCCTCCACAGACTCTTCTTCGGATCTGGATACAGAGTCCACAGGGTCTTTCTTCCATGATAGAAGCATCACACTTGGGAATCTTATAGGAATCAATAGCATTCTAGAACTATCAAGGAGATCATTAAGAGGAAGAAAGACTGATCAGATCTGTAAGGACAAAAAGAGCAACAACAACAACAACAGCAGCAGCAGCACCAAGTTCAGATTGTGTTGTTTCTCTCTATGCTCAAGGGACAGTACAGATGGTGAGAATGTGAACAGTACTAAAACTCCTCCATCCCTCGGCCATTTCCTTGCCGAAGAGAGAAGAGCTGCCATTGATGAATACAGAAGAAACCCTCAAATTTATGGCCCAGATGATGAGCTTGCCATGGCTCAGCAGGCTGCTACAGAACCCAACTCCCTCTTTGTTAATGGCCAAGTAGCTCCTCCTCCTCAATCTAGTCCATGGTTTGATTCAGATGTTGACAGAAGAAAACCATTGCTATTTTCATGCATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.38

Weight (kDa)

5.67

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	100, 162
AcoI	YGGCCR	2 cut(s)	418, 550
AcsI	RAATTY	1 cut(s)	477
AfaI	GTAC	2 cut(s)	373, 397
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	3 cut(s)	446, 499, 560
AluI	AGCT	3 cut(s)	446, 499, 560
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	100, 162
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	4 cut(s)	26, 418, 484, 550
ApeKI	GCWGC	7 cut(s)	40, 68, 318, 321, 324, 446, 518
ApoI	RAATTY	1 cut(s)	477
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	552
BauI	CACGAG	1 cut(s)	6
BbvI	GCAGC	7 cut(s)	52, 55, 330, 333, 336, 433, 505
BccI	CCATC	2 cut(s)	371, 418
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	2 cut(s)	236, 576
BfmI	CTRYAG	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	7 cut(s)	41, 69, 319, 322, 325, 447, 519
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	7 cut(s)	42, 70, 320, 323, 326, 448, 520
BmcAI	AGTACT	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	485
BmsI	GCATC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	415, 504, 581
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 388, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	614
BseDI	CCNNGG	3 cut(s)	415, 504, 581
BseGI	GGATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMI	GCAATG	1 cut(s)	614
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	5 cut(s)	124, 396, 552, 555, 558
BseXI	GCAGC	7 cut(s)	52, 55, 330, 333, 336, 433, 505
BshFI	GGCC	4 cut(s)	28, 420, 486, 552
BsiHKCI	CYCGRG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	4 cut(s)	28, 420, 486, 552
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	92, 154, 251, 274, 279
Bsp1720I	GCTNAGC	1 cut(s)	510
Bsp19I	CCATGG	2 cut(s)	504, 581
BspANI	GGCC	4 cut(s)	28, 420, 486, 552
BspCNI	CTCAG	1 cut(s)	523
BspPI	GGATC	2 cut(s)	100, 162
BspQI	GCTCTTC	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	415, 504, 581
BssMI	GATC	5 cut(s)	92, 154, 251, 274, 279
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	504, 581
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	80, 371, 395
Bst6I	CTCTTC	3 cut(s)	151, 429, 436
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstC8I	GCNNGC	4 cut(s)	26, 66, 501, 516
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	2 cut(s)	504, 581
BstF5I	GGATG	1 cut(s)	410
BstKTI	GATC	5 cut(s)	95, 157, 254, 277, 282
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	5 cut(s)	92, 154, 251, 274, 279
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 324, 515
BstNSI	RCATGY	2 cut(s)	53, 634
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	7 cut(s)	52, 55, 330, 333, 336, 433, 505
BstX2I	RGATCY	2 cut(s)	154, 279
BstYI	RGATCY	2 cut(s)	154, 279
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	4 cut(s)	28, 420, 486, 552
BtgI	CCRYGG	2 cut(s)	504, 581
BtsCI	GGATG	1 cut(s)	410
Cac8I	GCNNGC	4 cut(s)	26, 66, 501, 516
Cfr13I	GGNCC	1 cut(s)	485
Csp6I	GTAC	2 cut(s)	372, 396
CviAII	CATG	6 cut(s)	50, 188, 505, 582, 627, 631
CviQI	GTAC	2 cut(s)	372, 396
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	5 cut(s)	94, 156, 253, 276, 281
DpnII	GATC	5 cut(s)	92, 154, 251, 274, 279
EaeI	YGGCCR	2 cut(s)	418, 550
Eam1104I	CTCTTC	3 cut(s)	151, 429, 436
EarI	CTCTTC	3 cut(s)	151, 429, 436
Eco130I	CCWWGG	2 cut(s)	504, 581
Eco31I	GGTCTC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	72
EcoT14I	CCWWGG	2 cut(s)	504, 581
EcoT22I	ATGCAT	2 cut(s)	51, 632
ErhI	CCWWGG	2 cut(s)	504, 581
FaeI	CATG	6 cut(s)	53, 191, 508, 585, 630, 634
FaiI	YATR	9 cut(s)	51, 189, 218, 358, 483, 506, 583, 628, 632
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	6 cut(s)	49, 187, 504, 581, 626, 630
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	7 cut(s)	41, 69, 319, 322, 325, 447, 519
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	7 cut(s)	41, 69, 319, 322, 325, 447, 519
FspBI	CTAG	2 cut(s)	236, 576
GluI	GCNGC	7 cut(s)	41, 69, 319, 322, 325, 447, 519
HaeIII	GGCC	4 cut(s)	28, 420, 486, 552
Hin1II	CATG	6 cut(s)	53, 191, 508, 585, 630, 634
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HinfI	GANTC	5 cut(s)	143, 167, 211, 222, 590
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	3 cut(s)	171, 391, 601
Hpy188I	TCNGA	5 cut(s)	129, 154, 279, 338, 595
Hpy188III	TCNNGA	5 cut(s)	8, 74, 90, 158, 236
Hpy8I	GTNNAC	3 cut(s)	171, 391, 601
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	3 cut(s)	80, 371, 395
HpyCH4V	TGCA	3 cut(s)	40, 49, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 324, 515
HpyF3I	CTNAG	1 cut(s)	510
Hsp92II	CATG	6 cut(s)	53, 191, 508, 585, 630, 634
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	92, 154, 251, 274, 279
LguI	GCTCTTC	1 cut(s)	436
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	9 cut(s)	10, 17, 50, 75, 105, 143, 159, 500, 501
Lsp1109I	GCAGC	7 cut(s)	52, 55, 330, 333, 336, 433, 505
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	2 cut(s)	236, 576
MalI	GATC	5 cut(s)	94, 156, 253, 276, 281
MboI	GATC	5 cut(s)	92, 154, 251, 274, 279
MboII	GAAGA	8 cut(s)	138, 141, 175, 276, 446, 453, 477, 618
MflI	RGATCY	2 cut(s)	154, 279
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	137, 176
MmeI	TCCRAC	1 cut(s)	152
Mox20I	TGGCCA	1 cut(s)	552
Mph1103I	ATGCAT	2 cut(s)	51, 632
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	2 cut(s)	257, 546
MslI	CAYNNNNRTG	1 cut(s)	631
Msp20I	TGGCCA	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	46, 324, 515
NcoI	CCATGG	2 cut(s)	504, 581
NdeII	GATC	5 cut(s)	92, 154, 251, 274, 279
NlaIII	CATG	6 cut(s)	53, 191, 508, 585, 630, 634
NmeAIII	GCCGAG	1 cut(s)	396
NsiI	ATGCAT	2 cut(s)	51, 632
NspI	RCATGY	2 cut(s)	53, 634
PaeR7I	CTCGAG	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	436
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	211, 222, 590
PkrI	GCNGC	7 cut(s)	42, 70, 320, 323, 326, 448, 520
PleI	GAGTC	2 cut(s)	137, 175
PpsI	GAGTC	2 cut(s)	137, 175
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	154, 279
RsaI	GTAC	2 cut(s)	373, 397
RsaNI	GTAC	2 cut(s)	372, 396
RseI	CAYNNNNRTG	1 cut(s)	631
SapI	GCTCTTC	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	257, 546
SatI	GCNGC	7 cut(s)	41, 69, 319, 322, 325, 447, 519
Sau3AI	GATC	5 cut(s)	92, 154, 251, 274, 279
Sau96I	GGNCC	1 cut(s)	485
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	2 cut(s)	137, 176
SetI	ASST	4 cut(s)	134, 448, 501, 562
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	522
Sfr274I	CTCGAG	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	631
SmlI	CTYRAG	2 cut(s)	72, 361
SmoI	CTYRAG	2 cut(s)	72, 361
Sse9I	AATT	1 cut(s)	477
SspMI	CTAG	2 cut(s)	236, 576
StyI	CCWWGG	2 cut(s)	504, 581
TaaI	ACNGT	3 cut(s)	80, 371, 395
TaqI	TCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	477
TatI	WGTACW	2 cut(s)	371, 395
TfiI	GAWTC	3 cut(s)	211, 222, 590
Tru1I	TTAA	2 cut(s)	257, 546
Tru9I	TTAA	2 cut(s)	257, 546
TseI	GCWGC	7 cut(s)	40, 68, 318, 321, 324, 446, 518
TspDTI	ATGAA	2 cut(s)	471, 615
XapI	RAATTY	1 cut(s)	477
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	2 cut(s)	53, 634
XhoI	CTCGAG	1 cut(s)	72
XspI	CTAG	2 cut(s)	236, 576
ZrmI	AGTACT	1 cut(s)	397
Zsp2I	ATGCAT	2 cut(s)	51, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.