Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Forward (+)

11367536 .. 11369005

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG131300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTTTGTTGATTCGTTCATGTAACTGGTATCAGTCAACTGGGTCTTCATTCCATGACAATGGCATCACACTAGGGAGCCTCATTGGAGTATCTAGCATTTTCGACCTCTCTCGAAGATCCAGCATGGGAAGAAGGACAATAGAAGCCTCGAAAAACAAGAAGAGTTGCAAATACAAGCATTGGTTGTTTTCACTCTGCTTTAAGCTGACCCCTGAAGCTGTGGATACGAGTAATACTCCTTCTCTAGGTCACTTTCTTGAGGTGGAAAGAAGAGGAAGTACCAACATTAACAGAAGAAATCACAGTCCAAGACCAATCGAATATGGACCTGACGATTTCTCACCTGCTGTGGCGATTTCAGACGCCAACAGCCTATTTGTGGATGGTGTAGTTGCAGCTGCTCAGGCTTCAAGTGCTTCAGAAAGTGCAGATAATGGTGGAACAAGATCTAACAATAGAGAGTTAGTAGAATATGGAAACGGATTCAGAACCCCATTGCTGGTTTCATGTATGTGTGGACAACTCATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.45

Weight (kDa)

8.9

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
Acc36I	ACCTGC	1 cut(s)	355
AclWI	GGATC	1 cut(s)	114
AcuI	CTGAAG	2 cut(s)	237, 405
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	3 cut(s)	248, 382, 502
AgsI	TTSAA	1 cut(s)	414
AluBI	AGCT	3 cut(s)	208, 221, 401
AluI	AGCT	3 cut(s)	208, 221, 401
AlwI	GGATC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	398, 401
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	329
BarI	GAAGNNNNNNTAC	4 cut(s)	226, 258, 265, 297
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	388, 410
BccI	CCATC	1 cut(s)	380
BciVI	GTATCC	1 cut(s)	220
BfaI	CTAG	3 cut(s)	74, 96, 248
BfuAI	ACCTGC	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	2 cut(s)	399, 402
BlsI	GCNGC	2 cut(s)	400, 403
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 382, 502
Bse1I	ACTGG	2 cut(s)	32, 46
Bse3DI	GCAATG	1 cut(s)	497
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	3 cut(s)	248, 382, 502
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	32, 46
BseXI	GCAGC	2 cut(s)	388, 410
BsgI	GTGCAG	1 cut(s)	450
BslI	CCNNNNNNNGG	3 cut(s)	248, 382, 502
Bsp143I	GATC	2 cut(s)	119, 449
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	32, 46
BssMI	GATC	2 cut(s)	119, 449
BssNI	GRCGYC	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	2 cut(s)	158, 268
BstACI	GRCGYC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	405
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	2 cut(s)	122, 452
BstMBI	GATC	2 cut(s)	119, 449
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 416
BstV1I	GCAGC	2 cut(s)	388, 410
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	119, 449
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	2 cut(s)	119, 449
BsuI	GTATCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	391
BveI	ACCTGC	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	329
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	4 cut(s)	21, 56, 127, 510
CviJI	RGCY	7 cut(s)	81, 149, 208, 221, 375, 401, 410
CviKI_1	RGCY	7 cut(s)	81, 149, 208, 221, 375, 401, 410
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	2 cut(s)	121, 451
DpnII	GATC	2 cut(s)	119, 449
Eam1104I	CTCTTC	2 cut(s)	158, 268
EarI	CTCTTC	2 cut(s)	158, 268
Eco47I	GGWCC	1 cut(s)	329
Eco57I	CTGAAG	2 cut(s)	237, 405
EcoNI	CCTNNNNNAGG	1 cut(s)	246
FaeI	CATG	4 cut(s)	24, 59, 130, 513
FaiI	YATR	7 cut(s)	22, 57, 128, 327, 477, 511, 515
FatI	CATG	4 cut(s)	20, 55, 126, 509
Fnu4HI	GCNGC	2 cut(s)	399, 402
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	399, 402
FspBI	CTAG	3 cut(s)	74, 96, 248
GluI	GCNGC	2 cut(s)	399, 402
HgaI	GACGC	1 cut(s)	374
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	4 cut(s)	24, 59, 130, 513
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	2 cut(s)	13, 486
HphI	GGTGA	1 cut(s)	336
Hpy166II	GTNNAC	2 cut(s)	39, 521
Hpy188I	TCNGA	3 cut(s)	364, 424, 491
Hpy188III	TCNNGA	2 cut(s)	114, 260
Hpy8I	GTNNAC	2 cut(s)	39, 521
HpyAV	CCTTC	2 cut(s)	129, 252
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4V	TGCA	3 cut(s)	171, 398, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 416
HpyF3I	CTNAG	1 cut(s)	405
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	4 cut(s)	24, 59, 130, 513
Kzo9I	GATC	2 cut(s)	119, 449
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	8 cut(s)	13, 27, 136, 228, 345, 360, 392, 488
Lsp1109I	GCAGC	2 cut(s)	388, 410
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	3 cut(s)	74, 96, 248
MaeIII	GTNAC	2 cut(s)	23, 251
MalI	GATC	2 cut(s)	121, 451
MboI	GATC	2 cut(s)	119, 449
MboII	GAAGA	6 cut(s)	39, 129, 144, 175, 285, 309
MflI	RGATCY	2 cut(s)	119, 449
MnlI	CCTC	5 cut(s)	92, 119, 160, 256, 269
MseI	TTAA	3 cut(s)	204, 291, 531
MslI	CAYNNNNRTG	2 cut(s)	60, 514
MspA1I	CMGCKG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	407, 416
NdeII	GATC	2 cut(s)	119, 449
NlaIII	CATG	4 cut(s)	24, 59, 130, 513
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	251
PaqCI	CACCTGC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	13, 486
PkrI	GCNGC	2 cut(s)	400, 403
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	119, 449
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	2 cut(s)	60, 514
SaqAI	TTAA	3 cut(s)	204, 291, 531
SatI	GCNGC	2 cut(s)	399, 402
Sau3AI	GATC	2 cut(s)	119, 449
Sau96I	GGNCC	1 cut(s)	329
SetI	ASST	8 cut(s)	111, 210, 223, 253, 267, 334, 349, 403
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	2 cut(s)	60, 514
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SspMI	CTAG	3 cut(s)	74, 96, 248
TaaI	ACNGT	1 cut(s)	308
TaqI	TCGA	4 cut(s)	105, 115, 152, 321
TfiI	GAWTC	2 cut(s)	13, 486
Tru1I	TTAA	3 cut(s)	204, 291, 531
Tru9I	TTAA	3 cut(s)	204, 291, 531
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	2 cut(s)	398, 401
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	3 cut(s)	9, 39, 498
TspGWI	ACGGA	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	246
XspI	CTAG	3 cut(s)	74, 96, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.