MD04G1127100.v1.1

At3g17950-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
21301661 .. 21303037
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1127100.v1.1.491

Sequence Viewer

Length: 342 bp
ATGGTCATGTGCAAGAATAAAGAGGTCTTCTTTATAATCTGTGTTCTCTCCCTTGTCGAAAACCAGTCTTCTTTATCAAAACGTTCTTCCTATGAAGAAGTGAAAAGTTTCCCAGATACCAGCGAGAAAGCAAAAACAAAAGGAATCATGGCTCACCAGGACGAAGGGTGGCCGTTGGGATTGAGACCGCTGAATGCGAGAGTTGGGTTGATCAGAAACCGGGATTTGTCCGGTGGGTCGGTCTCATTCAGCACTTTGATCACTGCCTCTCCGACTTCCTCCATCGCCTCTTCTTCTTCTTCGTCCTCAGATCTTGAAACAGAGGTCGCATTTTCCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.23

Weight (kDa)

6.72

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
AciI CCGC 1 cut(s) 188
AclI AACGTT 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 170
AgsI TTSAA 1 cut(s) 317
AjnI CCWGG 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 178, 247
AoxI GGCC 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 146
BbsI GAAGAC 2 cut(s) 19, 60
BccI CCATC 1 cut(s) 290
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 2 cut(s) 210, 258
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 178, 247
BglII AGATCT 1 cut(s) 310
Bme1390I CCNGG 2 cut(s) 158, 221
BmrFI CCNGG 2 cut(s) 158, 221
BpiI GAAGAC 2 cut(s) 19, 60
BpuMI CCSGG 1 cut(s) 221
BsaI GGTCTC 2 cut(s) 178, 247
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 64
BshFI GGCC 1 cut(s) 172
BsiSI CCGG 2 cut(s) 220, 231
BsmAI GTCTC 2 cut(s) 178, 247
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 1 cut(s) 172
Bso31I GGTCTC 2 cut(s) 178, 247
Bsp143I GATC 3 cut(s) 210, 258, 310
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 320
BspTNI GGTCTC 2 cut(s) 178, 247
BsrI ACTGG 1 cut(s) 64
BssMI GATC 3 cut(s) 210, 258, 310
Bst2UI CCWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 307
BstKTI GATC 3 cut(s) 213, 261, 313
BstMAI GTCTC 2 cut(s) 178, 247
BstMBI GATC 3 cut(s) 210, 258, 310
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 156, 219
BstV2I GAAGAC 2 cut(s) 19, 60
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
CviAII CATG 2 cut(s) 7, 148
CviJI RGCY 2 cut(s) 152, 172
CviKI_1 RGCY 2 cut(s) 152, 172
DdeI CTNAG 1 cut(s) 307
DpnI GATC 3 cut(s) 212, 260, 312
DpnII GATC 3 cut(s) 210, 258, 310
EaeI YGGCCR 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco31I GGTCTC 2 cut(s) 178, 247
EcoRII CCWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 10, 151
FaiI YATR 4 cut(s) 8, 35, 93, 149
FatI CATG 2 cut(s) 6, 147
FbaI TGATCA 2 cut(s) 210, 258
HaeIII GGCC 1 cut(s) 172
HapII CCGG 2 cut(s) 220, 231
Hin1II CATG 2 cut(s) 10, 151
HinfI GANTC 1 cut(s) 144
HpaII CCGG 2 cut(s) 220, 231
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 3 cut(s) 215, 273, 310
Hpy188III TCNNGA 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 307
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 2 cut(s) 10, 151
Ksp22I TGATCA 2 cut(s) 210, 258
Kzo9I GATC 3 cut(s) 210, 258, 310
LpnPI CCDG 7 cut(s) 77, 126, 133, 143, 170, 233, 244
MaeII ACGT 1 cut(s) 82
MalI GATC 3 cut(s) 212, 260, 312
MboI GATC 3 cut(s) 210, 258, 310
MboII GAAGA 8 cut(s) 19, 60, 78, 107, 282, 285, 288, 291
MflI RGATCY 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 6 cut(s) 16, 277, 289, 298, 316, 316
MroXI GAANNNNTTC 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 2 cut(s) 220, 231
MspR9I CCNGG 2 cut(s) 158, 221
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 1 cut(s) 158
NciI CCSGG 1 cut(s) 221
NdeII GATC 3 cut(s) 210, 258, 310
NlaIII CATG 2 cut(s) 10, 151
PctI GAATGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 144
PsiI TTATAA 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 310
Sau3AI GATC 3 cut(s) 210, 258, 310
ScrFI CCNGG 2 cut(s) 158, 221
SetI ASST 3 cut(s) 27, 85, 327
SsiI CCGC 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 156, 219
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 57
TaqII GACCGA 1 cut(s) 229
TfiI GAWTC 1 cut(s) 144
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.