Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Reverse (-)

70038652 .. 70040538

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTCGTGAGCAGGAGGAAGGCTGGCCTCTGGGTTTGCAGCCAATGCATGTGAGAGTTGGGCTGGCTGCTCGAGACCGTGAAGTTTCTGGATCGGTGTCATTCAATACTTTACTAACTGGCTCTCCGACCTCCTCCACAGACTCTTCTTCGGATCTGGATACAGAGTCCACAGGGTCTTTCTTCCATGATAGAAGCATCACACTTGGGAATCTTATAGGAATCAATAGCATTCTAGAGCTATCAAGGAGATCATTAAGAGGAAGAAAGACTGATCAGATCTGTAAGGACAAAAAGAGCAACAACAACAACAACAGCAGCAGCACCAAGTTCAGATTGTGTTGTTTCTCTCTATGCTCAAGGGACAGTACAGATGGTGAGAATGTGAACAGTACTAAAACTCCTCCATCCCTCGGCCATTTCCTTGCCGAAGAGAGAAGAGCTGCCATTGATGAATACAGAAGAAACCCTCAAATTTATGGCCCAGATGATGAGCTTGCCATGGCTCAGCAGGCTTCTACAGAACCCAACTCCCTCTTTGTTAATGGCCAAGTAGCTCCTCCTCCTCAATCTAGTCCATGGTTTGATTCAGATGTTGACAGAAGAAAACCATTGCTATTTTCATGCATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.31

Weight (kDa)

5.67

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	100, 162
AcoI	YGGCCR	2 cut(s)	415, 547
AcsI	RAATTY	1 cut(s)	474
AfaI	GTAC	2 cut(s)	370, 394
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	4 cut(s)	241, 443, 496, 557
AluI	AGCT	4 cut(s)	241, 443, 496, 557
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	100, 162
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	4 cut(s)	26, 415, 481, 547
ApeKI	GCWGC	5 cut(s)	40, 68, 318, 321, 443
ApoI	RAATTY	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	549
BauI	CACGAG	1 cut(s)	6
BbvI	GCAGC	5 cut(s)	52, 55, 330, 333, 430
BccI	CCATC	2 cut(s)	368, 415
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	2 cut(s)	236, 573
BfmI	CTRYAG	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	5 cut(s)	41, 69, 319, 322, 444
BlpI	GCTNAGC	1 cut(s)	507
BlsI	GCNGC	5 cut(s)	42, 70, 320, 323, 445
BmcAI	AGTACT	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	482
BmsI	GCATC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	343
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	412, 501, 578
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 385, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	611
BseDI	CCNNGG	3 cut(s)	412, 501, 578
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	5 cut(s)	124, 393, 549, 552, 555
BseXI	GCAGC	5 cut(s)	52, 55, 330, 333, 430
BshFI	GGCC	4 cut(s)	28, 417, 483, 549
BsiHKCI	CYCGRG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	4 cut(s)	28, 417, 483, 549
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	92, 154, 251, 274, 279
Bsp1720I	GCTNAGC	1 cut(s)	507
Bsp19I	CCATGG	2 cut(s)	501, 578
BspANI	GGCC	4 cut(s)	28, 417, 483, 549
BspCNI	CTCAG	1 cut(s)	520
BspPI	GGATC	2 cut(s)	100, 162
BspQI	GCTCTTC	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	412, 501, 578
BssMI	GATC	5 cut(s)	92, 154, 251, 274, 279
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	501, 578
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	80, 368, 392
Bst6I	CTCTTC	3 cut(s)	151, 426, 433
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstC8I	GCNNGC	4 cut(s)	26, 66, 498, 513
BstDEI	CTNAG	1 cut(s)	507
BstDSI	CCRYGG	2 cut(s)	501, 578
BstF5I	GGATG	1 cut(s)	407
BstKTI	GATC	5 cut(s)	95, 157, 254, 277, 282
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	5 cut(s)	92, 154, 251, 274, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 512
BstNSI	RCATGY	2 cut(s)	53, 631
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	5 cut(s)	52, 55, 330, 333, 430
BstX2I	RGATCY	2 cut(s)	154, 279
BstYI	RGATCY	2 cut(s)	154, 279
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	4 cut(s)	28, 417, 483, 549
BtgI	CCRYGG	2 cut(s)	501, 578
BtsCI	GGATG	1 cut(s)	407
Cac8I	GCNNGC	4 cut(s)	26, 66, 498, 513
Cfr13I	GGNCC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	369, 393
CviAII	CATG	6 cut(s)	50, 188, 502, 579, 624, 628
CviQI	GTAC	2 cut(s)	369, 393
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	5 cut(s)	94, 156, 253, 276, 281
DpnII	GATC	5 cut(s)	92, 154, 251, 274, 279
EaeI	YGGCCR	2 cut(s)	415, 547
Eam1104I	CTCTTC	3 cut(s)	151, 426, 433
EarI	CTCTTC	3 cut(s)	151, 426, 433
Eco130I	CCWWGG	2 cut(s)	501, 578
Eco31I	GGTCTC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	72
EcoT14I	CCWWGG	2 cut(s)	501, 578
EcoT22I	ATGCAT	2 cut(s)	51, 629
ErhI	CCWWGG	2 cut(s)	501, 578
FaeI	CATG	6 cut(s)	53, 191, 505, 582, 627, 631
FaiI	YATR	9 cut(s)	51, 189, 218, 355, 480, 503, 580, 625, 629
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	6 cut(s)	49, 187, 501, 578, 623, 627
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	5 cut(s)	41, 69, 319, 322, 444
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	5 cut(s)	41, 69, 319, 322, 444
FspBI	CTAG	2 cut(s)	236, 573
GluI	GCNGC	5 cut(s)	41, 69, 319, 322, 444
HaeIII	GGCC	4 cut(s)	28, 417, 483, 549
Hin1II	CATG	6 cut(s)	53, 191, 505, 582, 627, 631
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	5 cut(s)	143, 167, 211, 222, 587
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	3 cut(s)	171, 388, 598
Hpy188I	TCNGA	5 cut(s)	129, 154, 279, 335, 592
Hpy188III	TCNNGA	5 cut(s)	8, 74, 90, 158, 236
Hpy8I	GTNNAC	3 cut(s)	171, 388, 598
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	3 cut(s)	80, 368, 392
HpyCH4V	TGCA	3 cut(s)	40, 49, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 512
HpyF3I	CTNAG	1 cut(s)	507
Hsp92II	CATG	6 cut(s)	53, 191, 505, 582, 627, 631
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	92, 154, 251, 274, 279
LguI	GCTCTTC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	562
LpnPI	CCDG	9 cut(s)	10, 17, 50, 75, 105, 143, 159, 497, 498
Lsp1109I	GCAGC	5 cut(s)	52, 55, 330, 333, 430
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	2 cut(s)	236, 573
MalI	GATC	5 cut(s)	94, 156, 253, 276, 281
MboI	GATC	5 cut(s)	92, 154, 251, 274, 279
MboII	GAAGA	8 cut(s)	138, 141, 175, 276, 443, 450, 474, 615
MflI	RGATCY	2 cut(s)	154, 279
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	1 cut(s)	474
MluNI	TGGCCA	1 cut(s)	549
MlyI	GAGTC	2 cut(s)	137, 176
MmeI	TCCRAC	1 cut(s)	152
Mox20I	TGGCCA	1 cut(s)	549
Mph1103I	ATGCAT	2 cut(s)	51, 629
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	2 cut(s)	257, 543
MslI	CAYNNNNRTG	1 cut(s)	628
Msp20I	TGGCCA	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	46, 512
NcoI	CCATGG	2 cut(s)	501, 578
NdeII	GATC	5 cut(s)	92, 154, 251, 274, 279
NlaIII	CATG	6 cut(s)	53, 191, 505, 582, 627, 631
NmeAIII	GCCGAG	1 cut(s)	393
NsiI	ATGCAT	2 cut(s)	51, 629
NspI	RCATGY	2 cut(s)	53, 631
PaeR7I	CTCGAG	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	433
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	211, 222, 587
PkrI	GCNGC	5 cut(s)	42, 70, 320, 323, 445
PleI	GAGTC	2 cut(s)	137, 175
PpsI	GAGTC	2 cut(s)	137, 175
PspPI	GGNCC	1 cut(s)	482
PsuI	RGATCY	2 cut(s)	154, 279
RsaI	GTAC	2 cut(s)	370, 394
RsaNI	GTAC	2 cut(s)	369, 393
RseI	CAYNNNNRTG	1 cut(s)	628
SapI	GCTCTTC	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	257, 543
SatI	GCNGC	5 cut(s)	41, 69, 319, 322, 444
Sau3AI	GATC	5 cut(s)	92, 154, 251, 274, 279
Sau96I	GGNCC	1 cut(s)	482
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	2 cut(s)	137, 176
SetI	ASST	5 cut(s)	134, 243, 445, 498, 559
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	519
Sfr274I	CTCGAG	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	628
SmlI	CTYRAG	2 cut(s)	72, 358
SmoI	CTYRAG	2 cut(s)	72, 358
Sse9I	AATT	1 cut(s)	474
SspMI	CTAG	2 cut(s)	236, 573
StyI	CCWWGG	2 cut(s)	501, 578
TaaI	ACNGT	3 cut(s)	80, 368, 392
TaqI	TCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	474
TatI	WGTACW	2 cut(s)	368, 392
TfiI	GAWTC	3 cut(s)	211, 222, 587
Tru1I	TTAA	2 cut(s)	257, 543
Tru9I	TTAA	2 cut(s)	257, 543
TseI	GCWGC	5 cut(s)	40, 68, 318, 321, 443
TspDTI	ATGAA	2 cut(s)	468, 612
XapI	RAATTY	1 cut(s)	474
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	2 cut(s)	53, 631
XhoI	CTCGAG	1 cut(s)	72
XspI	CTAG	2 cut(s)	236, 573
ZrmI	AGTACT	1 cut(s)	394
Zsp2I	ATGCAT	2 cut(s)	51, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.