Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Reverse (-)

21300028 .. 21301449

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1126900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCAACTGAATCTTTCTTCCATGACAAGGGCATCACACTGGGGAGCCTCATCGGCGTTTCCGGCATCCTAGATCTCTCCGGAAGATCTACACGGAGAAGGACAACAGAAACCTCCAAGAACAAAAAGAACCGTAAAACCAAACCTTGGTTGTTTTCCTTCTGCTCCAAGCTAACCAATGACTCTGTGAACGTGAGCAATGATACTCCATCACTAGGTCACTTTCTTGAGGCAGAAAGGAGAGCAAGTACCCACAACACCAACAGAAGAAATCACGTCGCTCCAATCGAATATGGCCCCGAAGATTTCTCACCGGCAGTGCCGGTTTCCGGCCCCAACGGGCTGTTTGTGGACGGTGCGGTTGCCGCTGCTCTGCCAAGTCCTTCAGAGAGTGGAGATGGTGGATCAAGATCCAACAGAGAGTTATTAGAATATGGCAATGGACTTGGAACTCCATTACTGCTTTCATGTTTGCGTGGAAAACTCGTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

17.64

Weight (kDa)

9.46

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	80
AciI	CCGC	2 cut(s)	359, 366
AclWI	GGATC	2 cut(s)	405, 412
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	4 cut(s)	28, 147, 215, 329
AjiI	CACGTC	1 cut(s)	277
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
AlwI	GGATC	2 cut(s)	405, 412
Aor13HI	TCCGGA	1 cut(s)	80
AoxI	GGCC	2 cut(s)	295, 331
ApeKI	GCWGC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	296, 332
AsuHPI	GGTGA	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	217, 392
BfaI	CTAG	2 cut(s)	71, 215
BglI	GCCNNNNNGGC	1 cut(s)	54
BglII	AGATCT	2 cut(s)	73, 86
BisI	GCNGC	2 cut(s)	366, 369
BlsI	GCNGC	2 cut(s)	367, 370
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	296, 332
BmiI	GGNNCC	3 cut(s)	47, 298, 334
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	42, 75
BmuI	ACTGGG	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	409
BsaJI	CCNNGG	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 147, 215, 329
Bse118I	RCCGGY	2 cut(s)	313, 322
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	205, 445
Bse8I	GATNNNNATC	1 cut(s)	409
BseAI	TCCGGA	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	66
BseJI	GATNNNNATC	1 cut(s)	409
BseLI	CCNNNNNNNGG	4 cut(s)	28, 147, 215, 329
BseMI	GCAATG	2 cut(s)	205, 445
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	2 cut(s)	297, 333
BsiSI	CCGG	5 cut(s)	63, 81, 314, 323, 330
BslI	CCNNNNNNNGG	4 cut(s)	28, 147, 215, 329
BsnI	GGCC	2 cut(s)	297, 333
Bsp13I	TCCGGA	1 cut(s)	80
Bsp143I	GATC	4 cut(s)	73, 86, 404, 410
BspACI	CCGC	2 cut(s)	359, 366
BspANI	GGCC	2 cut(s)	297, 333
BspEI	TCCGGA	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	47, 298, 334
BspPI	GGATC	2 cut(s)	405, 412
BsrDI	GCAATG	2 cut(s)	205, 445
BsrFI	RCCGGY	2 cut(s)	313, 322
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	2 cut(s)	313, 322
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	4 cut(s)	73, 86, 404, 410
BssT1I	CCWWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	134, 356
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	76, 89, 407, 413
BstMBI	GATC	4 cut(s)	73, 86, 404, 410
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 63, 365
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	3 cut(s)	73, 86, 410
BstYI	RGATCY	3 cut(s)	73, 86, 410
BsuRI	GGCC	2 cut(s)	297, 333
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	38, 324
Cfr10I	RCCGGY	2 cut(s)	313, 322
Cfr13I	GGNCC	2 cut(s)	296, 332
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	2 cut(s)	23, 468
CviJI	RGCY	5 cut(s)	48, 172, 297, 333, 343
CviKI_1	RGCY	5 cut(s)	48, 172, 297, 333, 343
CviQI	GTAC	1 cut(s)	249
DpnI	GATC	4 cut(s)	75, 88, 406, 412
DpnII	GATC	4 cut(s)	73, 86, 404, 410
Eco130I	CCWWGG	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	2 cut(s)	26, 471
FaiI	YATR	4 cut(s)	24, 294, 435, 469
FatI	CATG	2 cut(s)	22, 467
Fnu4HI	GCNGC	2 cut(s)	366, 369
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	366, 369
FspBI	CTAG	2 cut(s)	71, 215
GluI	GCNGC	2 cut(s)	366, 369
HaeIII	GGCC	2 cut(s)	297, 333
HapII	CCGG	5 cut(s)	63, 81, 314, 323, 330
Hin1II	CATG	2 cut(s)	26, 471
HinfI	GANTC	2 cut(s)	11, 182
HpaII	CCGG	5 cut(s)	63, 81, 314, 323, 330
HphI	GGTGA	1 cut(s)	303
Hpy166II	GTNNAC	2 cut(s)	190, 352
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	3 cut(s)	81, 227, 408
Hpy8I	GTNNAC	2 cut(s)	190, 352
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	93, 169, 393
HpyCH4III	ACNGT	2 cut(s)	134, 356
HpyCH4IV	ACGT	2 cut(s)	192, 276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 63, 365
HpySE526I	ACGT	2 cut(s)	192, 276
Hsp92II	CATG	2 cut(s)	26, 471
Kpn2I	TCCGGA	1 cut(s)	80
Kzo9I	GATC	4 cut(s)	73, 86, 404, 410
LmnI	GCTCC	3 cut(s)	45, 170, 286
LpnPI	CCDG	6 cut(s)	26, 76, 94, 327, 336, 343
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	42, 75
MaeI	CTAG	2 cut(s)	71, 215
MaeII	ACGT	2 cut(s)	192, 276
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	4 cut(s)	75, 88, 406, 412
MboI	GATC	4 cut(s)	73, 86, 404, 410
MboII	GAAGA	4 cut(s)	10, 96, 279, 314
MflI	RGATCY	3 cut(s)	73, 86, 410
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	3 cut(s)	59, 124, 223
MroI	TCCGGA	1 cut(s)	80
MseI	TTAA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	5 cut(s)	63, 81, 314, 323, 330
MwoI	GCNNNNNNNGC	3 cut(s)	54, 63, 365
NdeII	GATC	4 cut(s)	73, 86, 404, 410
NlaIII	CATG	2 cut(s)	26, 471
NlaIV	GGNNCC	3 cut(s)	47, 298, 334
NmuCI	GTSAC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	367, 370
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PspN4I	GGNNCC	3 cut(s)	47, 298, 334
PspPI	GGNCC	2 cut(s)	296, 332
PsuI	RGATCY	3 cut(s)	73, 86, 410
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	2 cut(s)	366, 369
Sau3AI	GATC	4 cut(s)	73, 86, 404, 410
Sau96I	GGNCC	2 cut(s)	296, 332
SchI	GAGTC	1 cut(s)	176
SetI	ASST	6 cut(s)	116, 148, 174, 195, 220, 279
SfaNI	GCATC	2 cut(s)	42, 75
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SsiI	CCGC	2 cut(s)	359, 366
SspMI	CTAG	2 cut(s)	71, 215
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	134, 356
TaiI	ACGT	2 cut(s)	195, 279
TaqI	TCGA	1 cut(s)	288
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	2 cut(s)	45, 324
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	45, 324
Van91I	CCANNNNNTGG	1 cut(s)	147
XspI	CTAG	2 cut(s)	71, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.