Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Reverse (-)

70092333 .. 70094666

Gene Structure 2334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTCGTGAGCAGGAGGAAGGCTGGCCTCTGGGTTTGCAGCCAATGCATGTGAGAGTTGGGCTGGCTGCTCGAGACCGTGAAGTTTCTGGATCGGTGTCATTCAATACTTTACTAACTGGCTCTCCGACCTCCTCCACAGACTCTTCTTCGGATCTGGATACAGAGTCGACAGGGTCTTTCTTCCATGATAGAAGCATCACACTTGGGAATCTTATAGGAATCAATAGCATTCTAGAGCTATCAAGGAGATCATTAAGAGGAAGAAAGACTGATCAGATCTGTAAGGATAAAAAGAGCAGCAACAACAACAACAACAACACCAAGTTCAGATTGTGTTGTTTCTCTCTATGCTCAAGGGACAGTACAGATGGTGAGAATGTGAACGGTACTAAAACTCCTCCATCCCTCGGCCATTTCCTTGCAGAAGAGAGAAGAGCTGCCATTGATGAATACAGAAGAAACCCTCAAATTTATGGCCCAGATGATGAGCTTGCCATGGCTCAGCAGGCTACTACAGAACCCAACTCCCTTTTTGTTAATGGACAAGTAGCTCCTCCTCCTCAATCTAGTCCATGGTTTGATTCAGATGTTGACAGAAGAAAACCATTGCTATTTTCATGCATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.23

Weight (kDa)

5.67

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AclWI	GGATC	2 cut(s)	100, 162
AcoI	YGGCCR	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	471
AfaI	GTAC	2 cut(s)	367, 391
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	4 cut(s)	241, 440, 493, 554
AluI	AGCT	4 cut(s)	241, 440, 493, 554
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	100, 162
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	3 cut(s)	26, 412, 478
ApeKI	GCWGC	4 cut(s)	40, 68, 300, 440
ApoI	RAATTY	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	72
BauI	CACGAG	1 cut(s)	6
BbvI	GCAGC	4 cut(s)	52, 55, 312, 427
BccI	CCATC	2 cut(s)	365, 412
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	2 cut(s)	236, 570
BfmI	CTRYAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	4 cut(s)	41, 69, 301, 441
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	4 cut(s)	42, 70, 302, 442
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	479
BmsI	GCATC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	340
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	409, 498, 575
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 382, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	608
BseDI	CCNNGG	3 cut(s)	409, 498, 575
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	5 cut(s)	124, 390, 546, 549, 552
BseXI	GCAGC	4 cut(s)	52, 55, 312, 427
BshFI	GGCC	3 cut(s)	28, 414, 480
BsiHKCI	CYCGRG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	28, 414, 480
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	92, 154, 251, 274, 279
Bsp1720I	GCTNAGC	1 cut(s)	504
Bsp19I	CCATGG	2 cut(s)	498, 575
BspANI	GGCC	3 cut(s)	28, 414, 480
BspCNI	CTCAG	1 cut(s)	517
BspPI	GGATC	2 cut(s)	100, 162
BspQI	GCTCTTC	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	409, 498, 575
BssMI	GATC	5 cut(s)	92, 154, 251, 274, 279
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	498, 575
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	80, 365, 389
Bst6I	CTCTTC	3 cut(s)	151, 423, 430
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstC8I	GCNNGC	4 cut(s)	26, 66, 495, 510
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	2 cut(s)	498, 575
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	5 cut(s)	95, 157, 254, 277, 282
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	5 cut(s)	92, 154, 251, 274, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 509
BstNSI	RCATGY	2 cut(s)	53, 628
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	4 cut(s)	52, 55, 312, 427
BstX2I	RGATCY	2 cut(s)	154, 279
BstYI	RGATCY	2 cut(s)	154, 279
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	28, 414, 480
BtgI	CCRYGG	2 cut(s)	498, 575
BtsCI	GGATG	1 cut(s)	404
Cac8I	GCNNGC	4 cut(s)	26, 66, 495, 510
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	366, 390
CviAII	CATG	6 cut(s)	50, 188, 499, 576, 621, 625
CviQI	GTAC	2 cut(s)	366, 390
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	5 cut(s)	94, 156, 253, 276, 281
DpnII	GATC	5 cut(s)	92, 154, 251, 274, 279
EaeI	YGGCCR	1 cut(s)	412
Eam1104I	CTCTTC	3 cut(s)	151, 423, 430
EarI	CTCTTC	3 cut(s)	151, 423, 430
Eco130I	CCWWGG	2 cut(s)	498, 575
Eco31I	GGTCTC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	72
EcoT14I	CCWWGG	2 cut(s)	498, 575
EcoT22I	ATGCAT	2 cut(s)	51, 626
ErhI	CCWWGG	2 cut(s)	498, 575
FaeI	CATG	6 cut(s)	53, 191, 502, 579, 624, 628
FaiI	YATR	9 cut(s)	51, 189, 218, 352, 477, 500, 577, 622, 626
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	6 cut(s)	49, 187, 498, 575, 620, 624
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	4 cut(s)	41, 69, 301, 441
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	4 cut(s)	41, 69, 301, 441
FspBI	CTAG	2 cut(s)	236, 570
GluI	GCNGC	4 cut(s)	41, 69, 301, 441
HaeIII	GGCC	3 cut(s)	28, 414, 480
Hin1II	CATG	6 cut(s)	53, 191, 502, 579, 624, 628
HincII	GTYRAC	2 cut(s)	171, 595
HindII	GTYRAC	2 cut(s)	171, 595
HinfI	GANTC	5 cut(s)	143, 167, 211, 222, 584
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	3 cut(s)	171, 385, 595
Hpy188I	TCNGA	5 cut(s)	129, 154, 279, 332, 589
Hpy188III	TCNNGA	5 cut(s)	8, 74, 90, 158, 236
Hpy8I	GTNNAC	3 cut(s)	171, 385, 595
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	3 cut(s)	80, 365, 389
HpyCH4V	TGCA	4 cut(s)	40, 49, 425, 624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 509
HpyF3I	CTNAG	1 cut(s)	504
Hsp92II	CATG	6 cut(s)	53, 191, 502, 579, 624, 628
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	92, 154, 251, 274, 279
LguI	GCTCTTC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	9 cut(s)	10, 17, 50, 75, 105, 143, 159, 494, 495
Lsp1109I	GCAGC	4 cut(s)	52, 55, 312, 427
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	2 cut(s)	236, 570
MalI	GATC	5 cut(s)	94, 156, 253, 276, 281
MboI	GATC	5 cut(s)	92, 154, 251, 274, 279
MboII	GAAGA	8 cut(s)	138, 141, 175, 276, 440, 447, 471, 612
MflI	RGATCY	2 cut(s)	154, 279
MluCI	AATT	1 cut(s)	471
MlyI	GAGTC	2 cut(s)	137, 176
MmeI	TCCRAC	1 cut(s)	152
Mph1103I	ATGCAT	2 cut(s)	51, 626
MseI	TTAA	2 cut(s)	257, 540
MslI	CAYNNNNRTG	1 cut(s)	625
Mva1269I	GAATGC	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	46, 509
NcoI	CCATGG	2 cut(s)	498, 575
NdeII	GATC	5 cut(s)	92, 154, 251, 274, 279
NlaIII	CATG	6 cut(s)	53, 191, 502, 579, 624, 628
NmeAIII	GCCGAG	1 cut(s)	390
NsiI	ATGCAT	2 cut(s)	51, 626
NspI	RCATGY	2 cut(s)	53, 628
PaeR7I	CTCGAG	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	430
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	211, 222, 584
PflFI	GACNNNGTC	1 cut(s)	175
PkrI	GCNGC	4 cut(s)	42, 70, 302, 442
PleI	GAGTC	2 cut(s)	137, 175
PpsI	GAGTC	2 cut(s)	137, 175
PspPI	GGNCC	1 cut(s)	479
PsuI	RGATCY	2 cut(s)	154, 279
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	2 cut(s)	367, 391
RsaNI	GTAC	2 cut(s)	366, 390
RseI	CAYNNNNRTG	1 cut(s)	625
SalI	GTCGAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	257, 540
SatI	GCNGC	4 cut(s)	41, 69, 301, 441
Sau3AI	GATC	5 cut(s)	92, 154, 251, 274, 279
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	2 cut(s)	137, 176
SetI	ASST	5 cut(s)	134, 243, 442, 495, 556
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	516
Sfr274I	CTCGAG	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	625
SmlI	CTYRAG	2 cut(s)	72, 355
SmoI	CTYRAG	2 cut(s)	72, 355
Sse9I	AATT	1 cut(s)	471
SspMI	CTAG	2 cut(s)	236, 570
StyI	CCWWGG	2 cut(s)	498, 575
TaaI	ACNGT	3 cut(s)	80, 365, 389
TaqI	TCGA	2 cut(s)	73, 170
TasI	AATT	1 cut(s)	471
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	3 cut(s)	211, 222, 584
Tru1I	TTAA	2 cut(s)	257, 540
Tru9I	TTAA	2 cut(s)	257, 540
TseI	GCWGC	4 cut(s)	40, 68, 300, 440
TspDTI	ATGAA	2 cut(s)	465, 609
Tth111I	GACNNNGTC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	471
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	2 cut(s)	53, 628
XhoI	CTCGAG	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	236, 570
Zsp2I	ATGCAT	2 cut(s)	51, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.