Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Forward (+)

5382650 .. 5384980

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G079000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGGTACTGCTTTGTCTTCTATCTCATTCTCCTTGGATTTTGCCCCTCTGGGTTCAACACTAGCTCTGATTCATTTGTTTTTCTTACTAAATTTCTATGGCCGGTGGATATGTTTATTATTTGCTATAATGTTTCTAGCTCTGAGGAAGGCTGGCCTCTGGGTTTGCAGCCAATGCATGTGAGAGTTGGGTTGGCTCAAAACAATGAGTTTTCCGGTTCAGTGTCATTCAACACTTTACTCACTGGTTCTCCAACTTCCTCTACAGATTCCTCTTCAGATCTAGACACAGAGTCCACAGGGTCTTTTTTCCATGACAGGAGCATTACACTGGGGAGCCTTATTGGAATCAATAACATTCTAGAGCTATCAAGAAGATCACTGAGGGGAAGAAAAACTGATCAGGTCTGTAAAGACAGGAAGAGCAACAACTCCACCAAGTTCAGATTGTGTTTTTTCTCTCTATGTTCCAGGGACAGTACAGATGGTGAGAATGTGAACAAAAACAACCATCCTCCATCTCTTGGTCACTTCCTTGCAGTGGAGAGAAGAGCAGCCAATGAAAATTATAGAGAAAACCCACCAATTTATGGACCAGATGATGAGGTTGCTTTAGCTGATCATCAGCCTGCTACACAACCCAACTCACTGTTTGTTGATGGTCAAGTTGCTCCTCCTCAATCTAGTCCATGGCTTGGTTCAGACCATGTTGACCAGAGAAAACCAGTTCTGTTTTCATGTATGTGTGGTGGGCAACTCTCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.2

Weight (kDa)

5.47

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	524, 590, 695
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	2 cut(s)	8, 481
AfiI	CCNNNNNNNGG	4 cut(s)	524, 541, 590, 695
AgsI	TTSAA	2 cut(s)	58, 232
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	4 cut(s)	66, 141, 367, 617
AluI	AGCT	4 cut(s)	66, 141, 367, 617
AoxI	GGCC	2 cut(s)	101, 155
ApeKI	GCWGC	2 cut(s)	169, 554
ApoI	RAATTY	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	181, 566
BccI	CCATC	4 cut(s)	479, 519, 526, 653
BciT130I	CCWGG	1 cut(s)	472
BclI	TGATCA	2 cut(s)	400, 619
BfaI	CTAG	5 cut(s)	63, 138, 284, 362, 684
BfmI	CTRYAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	2 cut(s)	170, 555
BlsI	GCNGC	2 cut(s)	171, 556
Bme1390I	CCNGG	1 cut(s)	472
Bme18I	GGWCC	1 cut(s)	593
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	472
BmrI	ACTGGG	2 cut(s)	341, 757
BmuI	ACTGGG	2 cut(s)	341, 757
BpiI	GAAGAC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	34, 471, 689
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	4 cut(s)	524, 541, 590, 695
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	4 cut(s)	250, 336, 725, 763
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	3 cut(s)	34, 471, 689
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	4 cut(s)	524, 541, 590, 695
BseMII	CTCAG	2 cut(s)	135, 374
BseNI	ACTGG	4 cut(s)	250, 336, 725, 763
BseRI	GAGGAG	2 cut(s)	663, 666
BseXI	GCAGC	2 cut(s)	181, 566
BshFI	GGCC	2 cut(s)	103, 157
BsiSI	CCGG	2 cut(s)	104, 216
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	4 cut(s)	524, 541, 590, 695
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	2 cut(s)	103, 157
Bsp143I	GATC	4 cut(s)	280, 377, 400, 619
Bsp19I	CCATGG	1 cut(s)	689
BspANI	GGCC	2 cut(s)	103, 157
BspCNI	CTCAG	2 cut(s)	136, 375
BspLI	GGNNCC	1 cut(s)	338
BspQI	GCTCTTC	2 cut(s)	416, 544
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	4 cut(s)	250, 336, 725, 763
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	3 cut(s)	34, 471, 689
BssMI	GATC	4 cut(s)	280, 377, 400, 619
BssT1I	CCWWGG	2 cut(s)	34, 689
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	2 cut(s)	479, 651
Bst6I	CTCTTC	3 cut(s)	280, 416, 544
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	155, 630
BstDEI	CTNAG	2 cut(s)	144, 383
BstDSI	CCRYGG	1 cut(s)	689
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	4 cut(s)	283, 380, 403, 622
BstMBI	GATC	4 cut(s)	280, 377, 400, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	470
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	181, 566
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	103, 157
BtgI	CCRYGG	1 cut(s)	689
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	6 cut(s)	228, 243, 329, 380, 546, 647
Cac8I	GCNNGC	2 cut(s)	155, 630
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	593
Csp6I	GTAC	2 cut(s)	7, 480
CviAII	CATG	5 cut(s)	179, 314, 690, 707, 738
CviQI	GTAC	2 cut(s)	7, 480
DdeI	CTNAG	2 cut(s)	144, 383
DpnI	GATC	4 cut(s)	282, 379, 402, 621
DpnII	GATC	4 cut(s)	280, 377, 400, 619
DriI	GACNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	101
Eam1104I	CTCTTC	3 cut(s)	280, 416, 544
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	3 cut(s)	280, 416, 544
Eco130I	CCWWGG	2 cut(s)	34, 689
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	2 cut(s)	34, 689
EcoT22I	ATGCAT	1 cut(s)	180
ErhI	CCWWGG	2 cut(s)	34, 689
FaeI	CATG	5 cut(s)	182, 317, 693, 710, 741
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	5 cut(s)	178, 313, 689, 706, 737
FbaI	TGATCA	2 cut(s)	400, 619
Fnu4HI	GCNGC	2 cut(s)	170, 555
FokI	GGATG	1 cut(s)	498
Fsp4HI	GCNGC	2 cut(s)	170, 555
FspBI	CTAG	5 cut(s)	63, 138, 284, 362, 684
GluI	GCNGC	2 cut(s)	170, 555
HaeIII	GGCC	2 cut(s)	103, 157
HapII	CCGG	2 cut(s)	104, 216
Hin1II	CATG	5 cut(s)	182, 317, 693, 710, 741
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	4 cut(s)	71, 269, 293, 348
HpaII	CCGG	2 cut(s)	104, 216
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	3 cut(s)	297, 499, 712
Hpy188I	TCNGA	5 cut(s)	70, 145, 280, 446, 703
Hpy188III	TCNNGA	3 cut(s)	284, 362, 372
Hpy8I	GTNNAC	3 cut(s)	297, 499, 712
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	2 cut(s)	479, 651
HpyCH4V	TGCA	3 cut(s)	169, 178, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	2 cut(s)	144, 383
Hsp92II	CATG	5 cut(s)	182, 317, 693, 710, 741
Ksp22I	TGATCA	2 cut(s)	400, 619
Kzo9I	GATC	4 cut(s)	280, 377, 400, 619
LguI	GCTCTTC	2 cut(s)	416, 544
LmnI	GCTCC	3 cut(s)	321, 336, 676
Lsp1109I	GCAGC	2 cut(s)	181, 566
MaeI	CTAG	5 cut(s)	63, 138, 284, 362, 684
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	4 cut(s)	282, 379, 402, 621
MboI	GATC	4 cut(s)	280, 377, 400, 619
MboII	GAAGA	6 cut(s)	10, 267, 387, 402, 433, 561
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	3 cut(s)	92, 565, 585
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	278
Mph1103I	ATGCAT	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	742
MspI	CCGG	2 cut(s)	104, 216
MspR9I	CCNGG	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	689
NdeII	GATC	4 cut(s)	280, 377, 400, 619
NlaIII	CATG	5 cut(s)	182, 317, 693, 710, 741
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	180
NspI	RCATGY	1 cut(s)	182
PciSI	GCTCTTC	2 cut(s)	416, 544
PfeI	GAWTC	3 cut(s)	71, 269, 348
PflMI	CCANNNNNTGG	3 cut(s)	524, 590, 695
PkrI	GCNGC	2 cut(s)	171, 556
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	2 cut(s)	8, 481
RsaNI	GTAC	2 cut(s)	7, 480
RseI	CAYNNNNRTG	1 cut(s)	742
SapI	GCTCTTC	2 cut(s)	416, 544
SatI	GCNGC	2 cut(s)	170, 555
Sau3AI	GATC	4 cut(s)	280, 377, 400, 619
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	472
SetI	ASST	6 cut(s)	68, 143, 369, 408, 609, 619
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	742
Sse9I	AATT	3 cut(s)	92, 565, 585
SspMI	CTAG	5 cut(s)	63, 138, 284, 362, 684
StyD4I	CCNGG	1 cut(s)	470
StyI	CCWWGG	2 cut(s)	34, 689
TaaI	ACNGT	2 cut(s)	479, 651
TasI	AATT	3 cut(s)	92, 565, 585
TatI	WGTACW	1 cut(s)	479
TfiI	GAWTC	3 cut(s)	71, 269, 348
TscAI	CASTG	6 cut(s)	228, 250, 336, 387, 546, 654
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	2 cut(s)	169, 554
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	3 cut(s)	63, 576, 726
TspRI	CASTG	6 cut(s)	228, 250, 336, 387, 546, 654
Van91I	CCANNNNNTGG	3 cut(s)	524, 590, 695
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	1 cut(s)	92
XbaI	TCTAGA	2 cut(s)	283, 361
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	5 cut(s)	63, 138, 284, 362, 684
Zsp2I	ATGCAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.