Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Forward (+)

6224394 .. 6226552

Gene Structure 2159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTCAGCAAATACAGCAGGAGGAAGGATGGCCTCTGGGATTGCAGCCAATGCATGTGAGAGTTGGGCTGACTGCTTCAAACCATGAATTTTCTGGGTCAGTTTCTTTCAACACTTTACTCACTGGTTCTCCAACTTCCTCCACTGATTCCTCATCAGATCTGGACACAGAGTCCACAGGGTCTTTTTTCCATGATAGGAGCATCACACTTGGGAGCCTTATAGGAATCAATAGCATTCTGGAGCTCTCAAGAAGATCACTGAGAGGAAGAAAACCCGATCATCAGGCCGGTAAGGACAGGAAGACGAACAACAACAATAACAACAACAATACCAAGTTCAGAATGTGTTTTTTCTCTTTATGCTCTAAAGACAGTACAGACGGTGAGAATGTGTGCCATCATCAGCCATCTCTCGGCCACTTTCTTGCGGCAGAGAGACAAGCGGCCAATGAAAGTTACAGAACAAACCCTCCAATTTACGGACCAGATGACGAGCTTGCCCTAGCCGAGCATCATCAGCCTGCTAGAGAATCAAGTAACTCACTCTTTGTTGATGGTCAAGTTGCTCCTCCTCAATCTAGTCCATGGTTTGGTTCAGATCATGTTGACCAAAGAAAATCAATGCTCTTTTCATGCATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.73

Weight (kDa)

5.89

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	593
AciI	CCGC	2 cut(s)	431, 446
AcoI	YGGCCR	2 cut(s)	418, 447
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	3 cut(s)	416, 482, 593
AgsI	TTSAA	2 cut(s)	81, 112
AhdI	GACNNNNNGTC	1 cut(s)	172
AloI	GAACNNNNNNTCC	2 cut(s)	457, 489
AluBI	AGCT	2 cut(s)	247, 499
AluI	AGCT	2 cut(s)	247, 499
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	433
AoxI	GGCC	4 cut(s)	32, 288, 418, 447
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	4 cut(s)	24, 408, 418, 551
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	3 cut(s)	506, 528, 582
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	3 cut(s)	47, 432, 447
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	3 cut(s)	48, 433, 448
Bme18I	GGWCC	1 cut(s)	485
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	218
BmsI	GCATC	2 cut(s)	213, 523
BpiI	GAAGAC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	587
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 457, 487
Bsc4I	CCNNNNNNNGG	3 cut(s)	416, 482, 593
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	416, 482, 593
BseMII	CTCAG	2 cut(s)	20, 254
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	561, 564
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	4 cut(s)	34, 290, 420, 449
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	416, 482, 593
BsmAI	GTCTC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	4 cut(s)	34, 290, 420, 449
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	160, 257, 280, 601
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	587
BspACI	CCGC	2 cut(s)	431, 446
BspANI	GGCC	4 cut(s)	34, 290, 420, 449
BspCNI	CTCAG	2 cut(s)	19, 255
BspLI	GGNNCC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	4 cut(s)	160, 257, 280, 601
BssT1I	CCWWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	377, 386
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	501, 525
BstDEI	CTNAG	2 cut(s)	6, 263
BstDSI	CCRYGG	1 cut(s)	587
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	4 cut(s)	163, 260, 283, 604
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	160, 257, 280, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 52, 520
BstNSI	RCATGY	2 cut(s)	59, 643
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	4 cut(s)	34, 290, 420, 449
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	3 cut(s)	123, 144, 260
Cac8I	GCNNGC	2 cut(s)	501, 525
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	7 cut(s)	56, 86, 194, 588, 605, 636, 640
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	6, 263
DpnI	GATC	4 cut(s)	162, 259, 282, 603
DpnII	GATC	4 cut(s)	160, 257, 280, 601
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	2 cut(s)	418, 447
Eam1105I	GACNNNNNGTC	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	587
EcoT22I	ATGCAT	2 cut(s)	57, 641
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	587
FaeI	CATG	7 cut(s)	59, 89, 197, 591, 608, 639, 643
FaiI	YATR	9 cut(s)	57, 87, 195, 224, 364, 589, 606, 637, 641
FatI	CATG	7 cut(s)	55, 85, 193, 587, 604, 635, 639
Fnu4HI	GCNGC	3 cut(s)	47, 432, 447
FokI	GGATG	1 cut(s)	42
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	47, 432, 447
FspBI	CTAG	3 cut(s)	506, 528, 582
GluI	GCNGC	3 cut(s)	47, 432, 447
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	4 cut(s)	34, 290, 420, 449
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	7 cut(s)	59, 89, 197, 591, 608, 639, 643
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	149, 173, 228, 533
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	177, 610
Hpy188I	TCNGA	3 cut(s)	160, 344, 601
Hpy188III	TCNNGA	3 cut(s)	164, 242, 252
Hpy8I	GTNNAC	2 cut(s)	177, 610
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	377, 386
HpyCH4V	TGCA	3 cut(s)	46, 55, 639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 52, 520
HpyF3I	CTNAG	2 cut(s)	6, 263
Hsp92II	CATG	7 cut(s)	59, 89, 197, 591, 608, 639, 643
Kzo9I	GATC	4 cut(s)	160, 257, 280, 601
LmnI	GCTCC	4 cut(s)	201, 216, 244, 574
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	2 cut(s)	213, 523
MaeI	CTAG	3 cut(s)	506, 528, 582
MaeIII	GTNAC	2 cut(s)	458, 539
MalI	GATC	4 cut(s)	162, 259, 282, 603
MboI	GATC	4 cut(s)	160, 257, 280, 601
MboII	GAAGA	3 cut(s)	267, 282, 316
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	89, 477
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	8 cut(s)	16, 45, 151, 163, 260, 483, 582, 585
Mph1103I	ATGCAT	2 cut(s)	57, 641
MslI	CAYNNNNRTG	1 cut(s)	640
MspI	CCGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	16, 52, 520
NcoI	CCATGG	1 cut(s)	587
NdeII	GATC	4 cut(s)	160, 257, 280, 601
NlaIII	CATG	7 cut(s)	59, 89, 197, 591, 608, 639, 643
NlaIV	GGNNCC	1 cut(s)	218
NmeAIII	GCCGAG	2 cut(s)	396, 535
NsiI	ATGCAT	2 cut(s)	57, 641
NspI	RCATGY	2 cut(s)	59, 643
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	149, 228, 533
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	3 cut(s)	48, 433, 448
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	640
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	3 cut(s)	47, 432, 447
Sau3AI	GATC	4 cut(s)	160, 257, 280, 601
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	2 cut(s)	249, 501
SfaNI	GCATC	2 cut(s)	213, 523
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	640
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	89, 477
SsiI	CCGC	2 cut(s)	431, 446
SspMI	CTAG	3 cut(s)	506, 528, 582
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	2 cut(s)	377, 386
TasI	AATT	2 cut(s)	89, 477
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	2 cut(s)	434, 449
TfiI	GAWTC	3 cut(s)	149, 228, 533
TscAI	CASTG	3 cut(s)	130, 151, 267
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	102, 468, 624
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	3 cut(s)	130, 151, 267
Van91I	CCANNNNNTGG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	2 cut(s)	59, 643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XspI	CTAG	3 cut(s)	506, 528, 582
Zsp2I	ATGCAT	2 cut(s)	57, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.