Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Reverse (-)

71803618 .. 71806582

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG450400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCATGTGAGAGTTGGGCTGGCTGCTCGAGACCGTGAAGTTTCTGGATCGGTGTCATTCAATACTTTACTAACTGGCTCTCCGACCTCCTCCACAGACTCTTCTTCGGATCTGGATACAGAGTCCACAGGGTCTTTCTTCCATGATAGAAGCATCACACTTGGGAATCTTATAGGAATCAATAGCATTCTAGAACTATCAAGGAGATCATTAAGAGGAAGAAAGACTGATCAGATCTGTAAGGACAAAAAGAGCAACAACAACAACAACAGCAGCAGCAGCACCAAGTTCAGATTGTGTTGTTTCTCTCTATGCTCAAGGGACAGTACAGATGGTGAGAATGTGAACAGTACTAAAACTCCTCCATCCCTCGGCCATTTCCTTGCCGAAGAGAGAAGAGCTGCCATTGATGAATACAGAAGAAACCCTCAAATTTATGGCCCAGATGATGAGCTTGCCATGGCTCAGCAGGCTGCTACAGAACCCAACTCCCTCTTTGTTAATGGCCAAGTAGCTCCTCCTCCTCAATCTAGTCCATGGTTTGATTCAGATGTTGACAGAAGAAAACCATTGCTATTTTCATGCATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.66

Weight (kDa)

6.3

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	55, 117
AcoI	YGGCCR	2 cut(s)	373, 505
AcsI	RAATTY	1 cut(s)	432
AfaI	GTAC	2 cut(s)	328, 352
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	3 cut(s)	401, 454, 515
AluI	AGCT	3 cut(s)	401, 454, 515
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	55, 117
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	3 cut(s)	373, 439, 505
ApeKI	GCWGC	6 cut(s)	23, 273, 276, 279, 401, 473
ApoI	RAATTY	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	507
BbvI	GCAGC	6 cut(s)	10, 285, 288, 291, 388, 460
BccI	CCATC	2 cut(s)	326, 373
BciVI	GTATCC	1 cut(s)	109
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	2 cut(s)	191, 531
BfmI	CTRYAG	1 cut(s)	477
BfuI	GTATCC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	6 cut(s)	24, 274, 277, 280, 402, 474
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	6 cut(s)	25, 275, 278, 281, 403, 475
BmcAI	AGTACT	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	440
BmsI	GCATC	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	370, 459, 536
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 343, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	569
BseDI	CCNNGG	3 cut(s)	370, 459, 536
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	569
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	5 cut(s)	79, 351, 507, 510, 513
BseXI	GCAGC	6 cut(s)	10, 285, 288, 291, 388, 460
BshFI	GGCC	3 cut(s)	375, 441, 507
BsiHKCI	CYCGRG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	3 cut(s)	375, 441, 507
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	27
Bsp143I	GATC	5 cut(s)	47, 109, 206, 229, 234
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	2 cut(s)	459, 536
BspANI	GGCC	3 cut(s)	375, 441, 507
BspCNI	CTCAG	1 cut(s)	478
BspPI	GGATC	2 cut(s)	55, 117
BspQI	GCTCTTC	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	370, 459, 536
BssMI	GATC	5 cut(s)	47, 109, 206, 229, 234
BssT1I	CCWWGG	2 cut(s)	459, 536
Bst4CI	ACNGT	3 cut(s)	35, 326, 350
Bst6I	CTCTTC	3 cut(s)	106, 384, 391
BstC8I	GCNNGC	3 cut(s)	21, 456, 471
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	2 cut(s)	459, 536
BstF5I	GGATG	1 cut(s)	365
BstKTI	GATC	5 cut(s)	50, 112, 209, 232, 237
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	5 cut(s)	47, 109, 206, 229, 234
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 470
BstNSI	RCATGY	2 cut(s)	8, 589
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	6 cut(s)	10, 285, 288, 291, 388, 460
BstX2I	RGATCY	2 cut(s)	109, 234
BstYI	RGATCY	2 cut(s)	109, 234
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	375, 441, 507
BtgI	CCRYGG	2 cut(s)	459, 536
BtsCI	GGATG	1 cut(s)	365
Cac8I	GCNNGC	3 cut(s)	21, 456, 471
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	327, 351
CviAII	CATG	6 cut(s)	5, 143, 460, 537, 582, 586
CviQI	GTAC	2 cut(s)	327, 351
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	5 cut(s)	49, 111, 208, 231, 236
DpnII	GATC	5 cut(s)	47, 109, 206, 229, 234
EaeI	YGGCCR	2 cut(s)	373, 505
Eam1104I	CTCTTC	3 cut(s)	106, 384, 391
EarI	CTCTTC	3 cut(s)	106, 384, 391
Eco130I	CCWWGG	2 cut(s)	459, 536
Eco31I	GGTCTC	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	459, 536
EcoT22I	ATGCAT	2 cut(s)	6, 587
ErhI	CCWWGG	2 cut(s)	459, 536
FaeI	CATG	6 cut(s)	8, 146, 463, 540, 585, 589
FaiI	YATR	9 cut(s)	6, 144, 173, 313, 438, 461, 538, 583, 587
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	6 cut(s)	4, 142, 459, 536, 581, 585
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	6 cut(s)	24, 274, 277, 280, 402, 474
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	6 cut(s)	24, 274, 277, 280, 402, 474
FspBI	CTAG	2 cut(s)	191, 531
GluI	GCNGC	6 cut(s)	24, 274, 277, 280, 402, 474
HaeIII	GGCC	3 cut(s)	375, 441, 507
Hin1II	CATG	6 cut(s)	8, 146, 463, 540, 585, 589
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	5 cut(s)	98, 122, 166, 177, 545
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	3 cut(s)	126, 346, 556
Hpy188I	TCNGA	5 cut(s)	84, 109, 234, 293, 550
Hpy188III	TCNNGA	4 cut(s)	29, 45, 113, 191
Hpy8I	GTNNAC	3 cut(s)	126, 346, 556
HpyCH4III	ACNGT	3 cut(s)	35, 326, 350
HpyCH4V	TGCA	2 cut(s)	4, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 470
HpyF3I	CTNAG	1 cut(s)	465
Hsp92II	CATG	6 cut(s)	8, 146, 463, 540, 585, 589
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	47, 109, 206, 229, 234
LguI	GCTCTTC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	7 cut(s)	5, 30, 60, 98, 114, 455, 456
Lsp1109I	GCAGC	6 cut(s)	10, 285, 288, 291, 388, 460
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	191, 531
MalI	GATC	5 cut(s)	49, 111, 208, 231, 236
MboI	GATC	5 cut(s)	47, 109, 206, 229, 234
MboII	GAAGA	8 cut(s)	93, 96, 130, 231, 401, 408, 432, 573
MflI	RGATCY	2 cut(s)	109, 234
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	1 cut(s)	432
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	2 cut(s)	92, 131
MmeI	TCCRAC	1 cut(s)	107
Mox20I	TGGCCA	1 cut(s)	507
Mph1103I	ATGCAT	2 cut(s)	6, 587
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	2 cut(s)	212, 501
MslI	CAYNNNNRTG	1 cut(s)	586
Msp20I	TGGCCA	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	279, 470
NcoI	CCATGG	2 cut(s)	459, 536
NdeII	GATC	5 cut(s)	47, 109, 206, 229, 234
NlaIII	CATG	6 cut(s)	8, 146, 463, 540, 585, 589
NmeAIII	GCCGAG	1 cut(s)	351
NsiI	ATGCAT	2 cut(s)	6, 587
NspI	RCATGY	2 cut(s)	8, 589
PaeR7I	CTCGAG	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	391
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	166, 177, 545
PkrI	GCNGC	6 cut(s)	25, 275, 278, 281, 403, 475
PleI	GAGTC	2 cut(s)	92, 130
PpsI	GAGTC	2 cut(s)	92, 130
PspPI	GGNCC	1 cut(s)	440
PsuI	RGATCY	2 cut(s)	109, 234
RsaI	GTAC	2 cut(s)	328, 352
RsaNI	GTAC	2 cut(s)	327, 351
RseI	CAYNNNNRTG	1 cut(s)	586
SapI	GCTCTTC	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	212, 501
SatI	GCNGC	6 cut(s)	24, 274, 277, 280, 402, 474
Sau3AI	GATC	5 cut(s)	47, 109, 206, 229, 234
Sau96I	GGNCC	1 cut(s)	440
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	2 cut(s)	92, 131
SetI	ASST	4 cut(s)	89, 403, 456, 517
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	477
Sfr274I	CTCGAG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	586
SmlI	CTYRAG	2 cut(s)	27, 316
SmoI	CTYRAG	2 cut(s)	27, 316
Sse9I	AATT	1 cut(s)	432
SspMI	CTAG	2 cut(s)	191, 531
StyI	CCWWGG	2 cut(s)	459, 536
TaaI	ACNGT	3 cut(s)	35, 326, 350
TaqI	TCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	432
TatI	WGTACW	2 cut(s)	326, 350
TfiI	GAWTC	3 cut(s)	166, 177, 545
Tru1I	TTAA	2 cut(s)	212, 501
Tru9I	TTAA	2 cut(s)	212, 501
TseI	GCWGC	6 cut(s)	23, 273, 276, 279, 401, 473
TspDTI	ATGAA	2 cut(s)	426, 570
XapI	RAATTY	1 cut(s)	432
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	2 cut(s)	8, 589
XhoI	CTCGAG	1 cut(s)	27
XspI	CTAG	2 cut(s)	191, 531
ZrmI	AGTACT	1 cut(s)	352
Zsp2I	ATGCAT	2 cut(s)	6, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.