Prupe.6G253600_v2.0.a1

At3g17950-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001568
Physical Location & Seq
Reverse (-)
24716222 .. 24717953
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G253600.5

Sequence Viewer

Length: 672 bp
ATGGCTCATCAGGATGAAGGATGGCCTTTGGGATTGCGACCACTGAATGCAAGAGTTGGGTTGATCAGAAGCCGGGATTTCTCTGCCGGGTCGGTTTCATTCAGCACTTTGGTCAGTGGCTCTCCAACCTCTTCCATTGCCGCTTCTTCTTCTTCTTCTTCCTCAGATCTTGATACAGAGTCAACTGGGTCTTTCTTCCATGACAAGAGCATCACTCTAGGGAGCCTCCTTGGTGTTTCTGGCATTATAGGCCTCTCACGAAGATCAACGAGGAGAAGGGCAGTTGAAACCTCCAAAGGTAAAAAGAACCACAAATCCAAACCTTGGTTGTTTTCACTCTGCTCCAAGCTAACCAGCGACTCTGTGAATGAGAGTAATAACACTCCATCCTTAGGTCACTTTCTTGAAGTAGAAAGGAGAGCAAGTAATAACAACATTAACAGAAGAAATCACGGTGGACCGATTGAATACGGGACTGACAATTTCTCACCGGCTGTGCCGGTTTCAGACCCCAACAGGCTATTCGTAGACGGCCTAGTAGCAGCTGGTCAGCCAAGTTCTTCACACAGAGCGGATGGTGGAGCAAGATCCAACAGGAAGCTATTAGAATCTGGCAATGGATTTGGAACTCCATTAGTGTCATCATGTTTGTGTGGACAACTCGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

23.6

Weight (kDa)

9.87

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 324
AccBSI CCGCTC 1 cut(s) 572
AccI GTMKAC 1 cut(s) 528
AciI CCGC 2 cut(s) 141, 572
AclWI GGATC 1 cut(s) 582
AfiI CCNNNNNNNGG 2 cut(s) 324, 392
AgsI TTSAA 3 cut(s) 287, 407, 467
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 3 cut(s) 349, 545, 601
AluI AGCT 3 cut(s) 349, 545, 601
AlwI GGATC 1 cut(s) 582
AoxI GGCC 3 cut(s) 23, 250, 532
ApeKI GCWGC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 458
AsuC2I CCSGG 2 cut(s) 74, 88
AsuHPI GGTGA 1 cut(s) 480
AvaII GGWCC 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 391
BauI CACGAG 1 cut(s) 662
BbvI GCAGC 1 cut(s) 554
BccI CCATC 3 cut(s) 15, 394, 569
BceAI ACGGC 1 cut(s) 547
BclI TGATCA 1 cut(s) 63
BcnI CCSGG 2 cut(s) 74, 88
BfaI CTAG 2 cut(s) 218, 536
BglII AGATCT 1 cut(s) 166
BisI GCNGC 2 cut(s) 141, 543
BlsI GCNGC 2 cut(s) 142, 544
Bme1390I CCNGG 2 cut(s) 74, 88
Bme18I GGWCC 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 458
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 74, 88
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpuMI CCSGG 2 cut(s) 74, 88
BsaJI CCNNGG 2 cut(s) 229, 323
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 392
Bse118I RCCGGY 2 cut(s) 490, 499
Bse1I ACTGG 1 cut(s) 190
Bse21I CCTNAGG 1 cut(s) 391
Bse3DI GCAATG 2 cut(s) 135, 622
BseDI CCNNGG 2 cut(s) 229, 323
BseGI GGATG 4 cut(s) 19, 26, 386, 580
BseLI CCNNNNNNNGG 2 cut(s) 324, 392
BseMI GCAATG 2 cut(s) 135, 622
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 554
BshFI GGCC 3 cut(s) 25, 252, 534
BsiSI CCGG 4 cut(s) 73, 87, 491, 500
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 324, 392
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 3 cut(s) 25, 252, 534
Bsp143I GATC 4 cut(s) 63, 166, 263, 587
BspACI CCGC 2 cut(s) 141, 572
BspANI GGCC 3 cut(s) 25, 252, 534
BspCNI CTCAG 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 224
BspPI GGATC 1 cut(s) 582
BsrBI CCGCTC 1 cut(s) 572
BsrDI GCAATG 2 cut(s) 135, 622
BsrFI RCCGGY 2 cut(s) 490, 499
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 2 cut(s) 490, 499
BssECI CCNNGG 2 cut(s) 229, 323
BssMI GATC 4 cut(s) 63, 166, 263, 587
BssSI CACGAG 1 cut(s) 662
BssT1I CCWWGG 2 cut(s) 229, 323
Bst2BI CACGAG 1 cut(s) 662
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 163, 391
BstF5I GGATG 4 cut(s) 19, 26, 386, 580
BstKTI GATC 4 cut(s) 66, 169, 266, 590
BstMBI GATC 4 cut(s) 63, 166, 263, 587
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstSCI CCNGG 2 cut(s) 72, 86
BstV1I GCAGC 1 cut(s) 554
BstX2I RGATCY 2 cut(s) 166, 587
BstYI RGATCY 2 cut(s) 166, 587
Bsu36I CCTNAGG 1 cut(s) 391
BsuRI GGCC 3 cut(s) 25, 252, 534
BtsCI GGATG 4 cut(s) 19, 26, 386, 580
BtsIMutI CAGTG 2 cut(s) 41, 121
Cfr10I RCCGGY 2 cut(s) 490, 499
Cfr13I GGNCC 1 cut(s) 458
CviAII CATG 2 cut(s) 200, 645
DdeI CTNAG 2 cut(s) 163, 391
DpnI GATC 4 cut(s) 65, 168, 265, 589
DpnII GATC 4 cut(s) 63, 166, 263, 587
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 229, 323
Eco147I AGGCCT 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 458
Eco81I CCTNAGG 1 cut(s) 391
EcoT14I CCWWGG 2 cut(s) 229, 323
ErhI CCWWGG 2 cut(s) 229, 323
FaeI CATG 2 cut(s) 203, 648
FaiI YATR 3 cut(s) 201, 248, 646
FaqI GGGAC 1 cut(s) 487
FatI CATG 2 cut(s) 199, 644
FbaI TGATCA 1 cut(s) 63
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 2 cut(s) 141, 543
FokI GGATG 4 cut(s) 26, 33, 373, 587
Fsp4HI GCNGC 2 cut(s) 141, 543
FspBI CTAG 2 cut(s) 218, 536
GluI GCNGC 2 cut(s) 141, 543
HaeIII GGCC 3 cut(s) 25, 252, 534
HapII CCGG 4 cut(s) 73, 87, 491, 500
Hin1II CATG 2 cut(s) 203, 648
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 3 cut(s) 179, 359, 608
HpaII CCGG 4 cut(s) 73, 87, 491, 500
HphI GGTGA 1 cut(s) 480
Hpy166II GTNNAC 4 cut(s) 183, 458, 529, 656
Hpy188I TCNGA 3 cut(s) 68, 166, 508
Hpy188III TCNNGA 5 cut(s) 11, 170, 258, 404, 664
Hpy8I GTNNAC 4 cut(s) 183, 458, 529, 656
HpyAV CCTTC 2 cut(s) 11, 270
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 2 cut(s) 163, 391
Hsp92II CATG 2 cut(s) 203, 648
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 4 cut(s) 63, 166, 263, 587
LmnI GCTCC 3 cut(s) 222, 347, 581
Lsp1109I GCAGC 1 cut(s) 554
LweI GCATC 1 cut(s) 219
MaeI CTAG 2 cut(s) 218, 536
MaeIII GTNAC 1 cut(s) 395
MalI GATC 4 cut(s) 65, 168, 265, 589
MbiI CCGCTC 1 cut(s) 572
MboI GATC 4 cut(s) 63, 166, 263, 587
MflI RGATCY 2 cut(s) 166, 587
MluCI AATT 1 cut(s) 481
MlyI GAGTC 2 cut(s) 188, 353
MmeI TCCRAC 2 cut(s) 149, 615
MnlI CCTC 6 cut(s) 139, 172, 236, 263, 264, 301
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 2 cut(s) 12, 649
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 4 cut(s) 73, 87, 491, 500
MspR9I CCNGG 2 cut(s) 74, 88
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 249
NciI CCSGG 2 cut(s) 74, 88
NdeII GATC 4 cut(s) 63, 166, 263, 587
NlaIII CATG 2 cut(s) 203, 648
NlaIV GGNNCC 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 395
PceI AGGCCT 1 cut(s) 252
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 608
PflMI CCANNNNNTGG 1 cut(s) 324
PkrI GCNGC 2 cut(s) 142, 544
PleI GAGTC 2 cut(s) 187, 353
PpsI GAGTC 2 cut(s) 187, 353
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 458
PsuI RGATCY 2 cut(s) 166, 587
PvuII CAGCTG 1 cut(s) 545
RseI CAYNNNNRTG 2 cut(s) 12, 649
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 2 cut(s) 141, 543
Sau3AI GATC 4 cut(s) 63, 166, 263, 587
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 2 cut(s) 188, 353
ScrFI CCNGG 2 cut(s) 74, 88
SetI ASST 8 cut(s) 131, 293, 301, 325, 351, 397, 547, 603
SfaNI GCATC 1 cut(s) 219
SinI GGWCC 1 cut(s) 458
SmiMI CAYNNNNRTG 2 cut(s) 12, 649
Sse9I AATT 1 cut(s) 481
SseBI AGGCCT 1 cut(s) 252
SsiI CCGC 2 cut(s) 141, 572
SspMI CTAG 2 cut(s) 218, 536
StuI AGGCCT 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 72, 86
StyI CCWWGG 2 cut(s) 229, 323
TaaI ACNGT 1 cut(s) 455
TaqII GACCGA 1 cut(s) 475
TasI AATT 1 cut(s) 481
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 2 cut(s) 48, 121
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 542
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 30, 87
TspRI CASTG 2 cut(s) 48, 121
Van91I CCANNNNNTGG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 2 cut(s) 218, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.