Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001568

Physical Location & Seq

Genomic Coordinates Forward (+)

8122694 .. 8125747

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1096000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTCAGCAAATACAGCAGGACGAAGGATGGCCTCTGGGATTGCAGCCAATGCATGTGAGAATTGGGCTGGCTGCTTCAAACCATGAATTTTCTGGGTCAGTTTCTTTCAACACTTTACTCACTGGTTCTCCAACTTCCTCCACTGATTCATCATCAGATCTGGACACAGAGTCCACAGGGTCTTTTTTCCATGATAGGAGCATCACACTTGGGAGCCTTATAGGAATCAATAGCATTCTGGAGCTCTCAAGAAGATCACTGAGAGGAAGAAAATCCGAGCATCAGGCTGGTAAGGACAGGAAGATGAACAACACCACCACAACCACCACCAAGTTCAGAATGTGTTTTTTCTCTTTATGCTCTAAAGACAGTACAGACGGTGAGAATGTGCGCCATCATCAGCCATCTCTCGGCCACTTTCTTGCGGCAGAGAGACAAGCGGCCAATGAAAGTTACAGAACAAACCCTCCAATTTACGGACCAGATGACGAGCTTGCCCTAGCTGAGCATCATCAGCCTGCTAGAGAATCAAATAACTCACTCTTTGTTGATGGTCAAGTTGCTCCTCCTCAATCTAGTCCATGGTTTGGTTCAGATCATGTTGACCAAAGAAAATCAATGCTCTTTTCATGCATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.63

Weight (kDa)

6.03

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02440
fragaria_vesca	FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_3g35940 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980 FvH4_6g13980
malus_domestica	MD03G1096000.v1.1 MD04G1126900.v1.1 MD04G1127100.v1.1 MD11G1110500.v1.1
prunus_persica	Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G079000_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1 Prupe.6G253600_v2.0.a1
pyrus_communis	pycom03g07850 pycom04g11380 pycom11g09130
rosa_chinensis	RchiOBHm_Chr2g0141581 RchiOBHm_Chr3g0466801 RchiOBHm_Chr5g0064221
rosa_laevigata	RLG00000024551 RLG00000035713
rosa_multiflora	Rmu_sc0008017.1_g000004 Rmu_ssc0000170.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016730 Rroxscaffold_6G00414130
rosa_rugosa	Rorug03G0083800 Rorug03G0083800 Rorug05G0363600 Rorug05G0363700
rosa_samantha	Rh1DG160600 Rh2DG438800 Rh3AG131300 Rh3BG152400 Rh3CG152500 Rh3DG153500 Rh5AG421400 Rh5BG437000 Rh5CG459700 Rh5DG450400
rosa_wichuraiana	Rw3G012410 Rw5G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	590
AciI	CCGC	2 cut(s)	428, 443
AcoI	YGGCCR	2 cut(s)	415, 444
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	3 cut(s)	413, 479, 590
AgsI	TTSAA	2 cut(s)	81, 112
AhdI	GACNNNNNGTC	1 cut(s)	172
AloI	GAACNNNNNNTCC	2 cut(s)	454, 486
AluBI	AGCT	3 cut(s)	247, 496, 506
AluI	AGCT	3 cut(s)	247, 496, 506
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	430
AoxI	GGCC	3 cut(s)	32, 415, 444
ApeKI	GCWGC	2 cut(s)	46, 74
ApoI	RAATTY	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	58, 61
BccI	CCATC	4 cut(s)	24, 405, 415, 548
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	3 cut(s)	503, 525, 579
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	4 cut(s)	47, 75, 429, 444
BlpI	GCTNAGC	2 cut(s)	6, 507
BlsI	GCNGC	4 cut(s)	48, 76, 430, 445
Bme18I	GGWCC	1 cut(s)	482
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	218
BmsI	GCATC	3 cut(s)	213, 292, 520
BpmI	CTGGAG	1 cut(s)	263
Bpu1102I	GCTNAGC	2 cut(s)	6, 507
BpuEI	CTTGAG	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	584
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 454, 484
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 479, 590
Bse1I	ACTGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	584
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	413, 479, 590
BseMII	CTCAG	3 cut(s)	20, 254, 498
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	558, 561
BseXI	GCAGC	2 cut(s)	58, 61
BshFI	GGCC	3 cut(s)	34, 417, 446
BsiHKAI	GWGCWC	1 cut(s)	249
BslI	CCNNNNNNNGG	3 cut(s)	413, 479, 590
BsmAI	GTCTC	1 cut(s)	430
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	3 cut(s)	34, 417, 446
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	160, 257, 598
Bsp1720I	GCTNAGC	2 cut(s)	6, 507
Bsp19I	CCATGG	1 cut(s)	584
BspACI	CCGC	2 cut(s)	428, 443
BspANI	GGCC	3 cut(s)	34, 417, 446
BspCNI	CTCAG	3 cut(s)	19, 255, 499
BspLI	GGNNCC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	584
BssMI	GATC	3 cut(s)	160, 257, 598
BssT1I	CCWWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	374, 383
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	72, 498, 522
BstDEI	CTNAG	3 cut(s)	6, 263, 507
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	3 cut(s)	163, 260, 601
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	3 cut(s)	160, 257, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 52, 517
BstNSI	RCATGY	2 cut(s)	59, 640
BstV1I	GCAGC	2 cut(s)	58, 61
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	3 cut(s)	34, 417, 446
BtgI	CCRYGG	1 cut(s)	584
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	3 cut(s)	123, 144, 260
Cac8I	GCNNGC	3 cut(s)	72, 498, 522
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	482
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	7 cut(s)	56, 86, 194, 585, 602, 633, 637
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	3 cut(s)	6, 263, 507
DpnI	GATC	3 cut(s)	162, 259, 600
DpnII	GATC	3 cut(s)	160, 257, 598
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	2 cut(s)	415, 444
Eam1105I	GACNNNNNGTC	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	584
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	584
EcoT22I	ATGCAT	2 cut(s)	57, 638
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	584
FaeI	CATG	7 cut(s)	59, 89, 197, 588, 605, 636, 640
FaiI	YATR	9 cut(s)	57, 87, 195, 224, 361, 586, 603, 634, 638
FatI	CATG	7 cut(s)	55, 85, 193, 584, 601, 632, 636
Fnu4HI	GCNGC	4 cut(s)	47, 75, 429, 444
FokI	GGATG	1 cut(s)	42
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	47, 75, 429, 444
FspBI	CTAG	3 cut(s)	503, 525, 579
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	4 cut(s)	47, 75, 429, 444
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	34, 417, 446
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	7 cut(s)	59, 89, 197, 588, 605, 636, 640
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	4 cut(s)	149, 173, 228, 530
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	2 cut(s)	177, 607
Hpy188I	TCNGA	4 cut(s)	160, 280, 341, 598
Hpy188III	TCNNGA	3 cut(s)	164, 242, 252
Hpy8I	GTNNAC	2 cut(s)	177, 607
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	374, 383
HpyCH4V	TGCA	3 cut(s)	46, 55, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 52, 517
HpyF3I	CTNAG	3 cut(s)	6, 263, 507
Hsp92II	CATG	7 cut(s)	59, 89, 197, 588, 605, 636, 640
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	160, 257, 598
LmnI	GCTCC	4 cut(s)	201, 216, 244, 571
Lsp1109I	GCAGC	2 cut(s)	58, 61
LweI	GCATC	3 cut(s)	213, 292, 520
MaeI	CTAG	3 cut(s)	503, 525, 579
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	3 cut(s)	162, 259, 600
MboI	GATC	3 cut(s)	160, 257, 598
MboII	GAAGA	3 cut(s)	267, 282, 316
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	3 cut(s)	63, 89, 474
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	6 cut(s)	45, 151, 260, 480, 579, 582
Mph1103I	ATGCAT	2 cut(s)	57, 638
MslI	CAYNNNNRTG	1 cut(s)	637
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	16, 52, 517
NcoI	CCATGG	1 cut(s)	584
NdeII	GATC	3 cut(s)	160, 257, 598
NlaIII	CATG	7 cut(s)	59, 89, 197, 588, 605, 636, 640
NlaIV	GGNNCC	1 cut(s)	218
NmeAIII	GCCGAG	1 cut(s)	393
NsiI	ATGCAT	2 cut(s)	57, 638
NspI	RCATGY	2 cut(s)	59, 640
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	149, 228, 530
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	48, 76, 430, 445
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	4 cut(s)	47, 75, 429, 444
Sau3AI	GATC	3 cut(s)	160, 257, 598
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	3 cut(s)	249, 498, 508
SfaNI	GCATC	3 cut(s)	213, 292, 520
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	637
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	3 cut(s)	63, 89, 474
SsiI	CCGC	2 cut(s)	428, 443
SspMI	CTAG	3 cut(s)	503, 525, 579
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	584
TaaI	ACNGT	2 cut(s)	374, 383
TasI	AATT	3 cut(s)	63, 89, 474
TatI	WGTACW	1 cut(s)	374
TauI	GCSGC	2 cut(s)	431, 446
TfiI	GAWTC	3 cut(s)	149, 228, 530
TscAI	CASTG	3 cut(s)	130, 151, 267
TseI	GCWGC	2 cut(s)	46, 74
TspDTI	ATGAA	5 cut(s)	102, 141, 323, 465, 621
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	3 cut(s)	130, 151, 267
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	2 cut(s)	59, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XspI	CTAG	3 cut(s)	503, 525, 579
Zsp2I	ATGCAT	2 cut(s)	57, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.