AT5G05810

RING-H2 zinc finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002352
Physical Location & Seq
Forward (+)
1746548 .. 1748327
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05810.1

Sequence Viewer

Length: 1224 bp
ATGTCTTCTTCTTCCTTGATACTTCTCTTCTCTACTCTCTCTCTCTTTCTCAATGTCTCACTCGCAGACAATCACACGGCGGTTGTTATAACAACCTCAGATACTCCACCGCCACTTCCTCCGCCTTCTCCACCGCCACGGCATAACTTCACTTCCTCTCTCATGCCCGGAATCGCAGTCGTTATCGCCGTCCTCACTGCGTTTTTCTCTCTCACTTTCTTACTTCTCCTCTACGTCAAACACTGTAAACGACGAAACGGCAGCGTTTACGTAAACCACCCGCAGCGTTTCGCAATCACTAGATACGGAGGAGGATATTACAACGGTGGAGGAGTAGTAGGAGGAAGGAAAAACTCCGGTATAGACCGGTCCGTGATTGAATCTTTACCGGTTTTCCGGTTTGGTGCATTAAGCGGTCACAAGGATGGTTTAGAGTGCGCCGTGTGTCTCGCTCGGTTCGAACCGACGGAAGTTCTGAGGTTATTGCCGAAATGTAAACACGCCTTCCACGTGGAATGTGTTGACACGTGGCTTGACGCTCACTCCACTTGCCCGCTTTGCCGTTACCGGGTCGACCCGGAAGATATACTCTTGATCGGTGATTGTAACTCCTGGTTCGAGCTCCAGTTCTCTAAAGATGAATCAAACAGTGTTAATAATAATCCTCCCGGTTTAACCCGGTTTATTCCGGTTAGTCGAATTTCCGGTCGTCATTCCTCGGCTGGTGAACGAGCGAGTCGACTCAACGAGATTAGAACATCTTCGTCGTATAAATCGAATCCGATGTCGTTTCGGAGATCACTCGATAGCTCTCTGAAAGTTAACGACGCCGGCGAGGAGAAATCGGAATCTGTCGCCGTTAATTGCTTGGATCGTCTACAGAGAAAAGACGGATTGTTGTTGATTCCGAATCGGGAGAGCTTTGAGGGGAGATTTGAGCACCGGATAATTATCTCCGGCGGGAATCGAGACGATCAGAGGTGGAGCGAAGTAAGGCCGTCGGATCTTTTGTATTTACGATCAGAGATGATACTCAGCGATTGCCGGAAATTAGCTGCGGCGGAGGGTGGCAGAGATGTAATTAACGGGAGAAGTGTGTCGGAGTTAACGGGAATTGAGAGACGGAGGAGATGGGGAGGAGAGCCGAGACAACGACAAGCCACGGCGGTGATTTCGAGGTGGCTCGCTTGGTCCCACCGTGCCTCCGCTTCCAGCATTGTTTAA

Protein Analysis

407

Amino Acids

45.27

Weight (kDa)

9.3

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 145 - 188 1.6e-13 Ring finger domain
zf-RING_11 PF17123 145 - 174 1.4e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 145 - 187 2.8e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 146 - 187 2.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 158 - 188 5e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
AccI GTMKAC 3 cut(s) 573, 739, 877
AclWI GGATC 2 cut(s) 879, 1011
AcsI RAATTY 1 cut(s) 699
AcvI CACGTG 2 cut(s) 511, 528
AcyI GRCGYC 1 cut(s) 828
AfiI CCNNNNNNNGG 1 cut(s) 568
AflIII ACRYGT 1 cut(s) 525
AgeI ACCGGT 2 cut(s) 366, 388
AgsI TTSAA 1 cut(s) 380
AjnI CCWGG 1 cut(s) 611
AleI CACNNNNGTG 1 cut(s) 1166
AluBI AGCT 4 cut(s) 622, 810, 921, 1055
AluI AGCT 4 cut(s) 622, 810, 921, 1055
Alw21I GWGCWC 2 cut(s) 624, 942
Alw26I GTCTC 5 cut(s) 61, 452, 963, 1114, 1141
AlwI GGATC 2 cut(s) 879, 1011
AoxI GGCC 1 cut(s) 995
ApeKI GCWGC 3 cut(s) 261, 283, 1055
ApoI RAATTY 1 cut(s) 699
ArsI GACNNNNNNTTYG 4 cut(s) 691, 723, 770, 802
AsiGI ACCGGT 2 cut(s) 366, 388
Asp700I GAANNNNTTC 1 cut(s) 760
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 2 cut(s) 369, 1191
AsuC2I CCSGG 5 cut(s) 168, 569, 578, 669, 679
AsuHPI GGTGA 3 cut(s) 611, 737, 1180
AsuII TTCGAA 1 cut(s) 459
AvaII GGWCC 2 cut(s) 369, 1191
BanII GRGCYC 1 cut(s) 624
BbrPI CACGTG 2 cut(s) 511, 528
Bbv12I GWGCWC 2 cut(s) 624, 942
BbvI GCAGC 3 cut(s) 273, 295, 1042
BccI CCATC 2 cut(s) 419, 1125
BceAI ACGGC 9 cut(s) 93, 155, 173, 274, 425, 546, 842, 982, 1179
BciT130I CCWGG 1 cut(s) 613
BcnI CCSGG 5 cut(s) 168, 569, 578, 669, 679
BcoDI GTCTC 5 cut(s) 61, 452, 963, 1114, 1141
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 878
BisI GCNGC 4 cut(s) 262, 284, 1056, 1059
BlsI GCNGC 4 cut(s) 263, 285, 1057, 1060
Bme1390I CCNGG 6 cut(s) 168, 569, 578, 613, 669, 679
Bme18I GGWCC 2 cut(s) 369, 1191
BmgT120I GGNCC 2 cut(s) 369, 1191
BmiI GGNNCC 1 cut(s) 1193
BmrFI CCNGG 6 cut(s) 168, 569, 578, 613, 669, 679
BpmI CTGGAG 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 459
BpuMI CCSGG 5 cut(s) 168, 569, 578, 669, 679
BsaAI YACGTR 3 cut(s) 271, 511, 528
BsaBI GATNNNNATC 1 cut(s) 950
BsaHI GRCGYC 1 cut(s) 828
BsaJI CCNNGG 3 cut(s) 137, 717, 1161
BsaWI WCCGGW 7 cut(s) 356, 366, 388, 396, 688, 704, 942
BsaXI ACNNNNNCTCC 6 cut(s) 321, 351, 527, 557, 1187, 1217
Bsc4I CCNNNNNNNGG 1 cut(s) 568
Bse118I RCCGGY 3 cut(s) 366, 388, 830
Bse1I ACTGG 1 cut(s) 625
Bse8I GATNNNNATC 1 cut(s) 950
BseBI CCWGG 1 cut(s) 613
BseDI CCNNGG 3 cut(s) 137, 717, 1161
BseGI GGATG 1 cut(s) 430
BseJI GATNNNNATC 1 cut(s) 950
BseLI CCNNNNNNNGG 1 cut(s) 568
BseMII CTCAG 3 cut(s) 111, 467, 1048
BseNI ACTGG 1 cut(s) 625
BseRI GAGGAG 6 cut(s) 218, 324, 345, 851, 1141, 1152
BseXI GCAGC 3 cut(s) 273, 295, 1042
Bsh1285I CGRYCG 1 cut(s) 709
BshFI GGCC 1 cut(s) 997
BshTI ACCGGT 2 cut(s) 366, 388
BsiEI CGRYCG 1 cut(s) 709
BsiHKAI GWGCWC 2 cut(s) 624, 942
BslFI GGGAC 1 cut(s) 1177
BslI CCNNNNNNNGG 1 cut(s) 568
BsmAI GTCTC 5 cut(s) 61, 452, 963, 1114, 1141
BsmBI CGTCTC 2 cut(s) 963, 1114
BsmFI GGGAC 1 cut(s) 1177
BsnI GGCC 1 cut(s) 997
Bsp119I TTCGAA 1 cut(s) 459
Bsp1286I GDGCHC 2 cut(s) 624, 942
Bsp143I GATC 6 cut(s) 594, 797, 871, 973, 1003, 1019
BspANI GGCC 1 cut(s) 997
BspCNI CTCAG 3 cut(s) 110, 468, 1047
BspLI GGNNCC 1 cut(s) 1193
BspPI GGATC 2 cut(s) 879, 1011
BspT104I TTCGAA 1 cut(s) 459
BsrFI RCCGGY 3 cut(s) 366, 388, 830
BsrI ACTGG 1 cut(s) 625
BssAI RCCGGY 3 cut(s) 366, 388, 830
BssECI CCNNGG 3 cut(s) 137, 717, 1161
BssMI GATC 6 cut(s) 594, 797, 871, 973, 1003, 1019
BssNI GRCGYC 1 cut(s) 828
Bst2UI CCWGG 1 cut(s) 613
Bst4CI ACNGT 4 cut(s) 245, 326, 650, 1199
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 828
BstBAI YACGTR 3 cut(s) 271, 511, 528
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 3 cut(s) 554, 832, 1185
BstDEI CTNAG 3 cut(s) 97, 476, 1034
BstDSI CCRYGG 2 cut(s) 137, 1161
BstF5I GGATG 1 cut(s) 430
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 6 cut(s) 597, 800, 874, 976, 1006, 1022
BstMAI GTCTC 5 cut(s) 61, 452, 963, 1114, 1141
BstMBI GATC 6 cut(s) 594, 797, 871, 973, 1003, 1019
BstMCI CGRYCG 1 cut(s) 709
BstMWI GCNNNNNNNGC 1 cut(s) 558
BstNI CCWGG 1 cut(s) 613
BstSCI CCNGG 6 cut(s) 166, 567, 576, 611, 667, 677
BstSFI CTRYAG 1 cut(s) 878
BstSNI TACGTA 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 273, 295, 1042
BstX2I RGATCY 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 1003
BsuRI GGCC 1 cut(s) 997
BtgI CCRYGG 2 cut(s) 137, 1161
BtsCI GGATG 1 cut(s) 430
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 3 cut(s) 195, 241, 655
Cac8I GCNNGC 3 cut(s) 554, 832, 1185
CfoI GCGC 1 cut(s) 440
Cfr10I RCCGGY 3 cut(s) 366, 388, 830
Cfr13I GGNCC 2 cut(s) 369, 1191
CpoI CGGWCCG 1 cut(s) 369
CseI GACGC 2 cut(s) 545, 836
CspAI ACCGGT 2 cut(s) 366, 388
CspI CGGWCCG 1 cut(s) 369
CviAII CATG 1 cut(s) 163
DdeI CTNAG 3 cut(s) 97, 476, 1034
DpnI GATC 6 cut(s) 596, 799, 873, 975, 1005, 1021
DpnII GATC 6 cut(s) 594, 797, 871, 973, 1003, 1019
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 2 cut(s) 111, 1076
Ecl136II GAGCTC 1 cut(s) 622
Eco105I TACGTA 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 624
Eco47I GGWCC 2 cut(s) 369, 1191
Eco53kI GAGCTC 1 cut(s) 622
Eco72I CACGTG 2 cut(s) 511, 528
EcoICRI GAGCTC 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 611
EcoT38I GRGCYC 1 cut(s) 624
Esp3I CGTCTC 2 cut(s) 963, 1114
FaeI CATG 1 cut(s) 166
FaiI YATR 6 cut(s) 89, 144, 164, 362, 587, 771
FaqI GGGAC 1 cut(s) 1177
FatI CATG 1 cut(s) 162
FauI CCCGC 3 cut(s) 288, 561, 953
FblI GTMKAC 3 cut(s) 573, 739, 877
Fnu4HI GCNGC 4 cut(s) 262, 284, 1056, 1059
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 4 cut(s) 262, 284, 1056, 1059
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 439
GluI GCNGC 4 cut(s) 262, 284, 1056, 1059
GsuI CTGGAG 1 cut(s) 608
HaeIII GGCC 1 cut(s) 997
HgaI GACGC 2 cut(s) 545, 836
HhaI GCGC 1 cut(s) 440
Hin1I GRCGYC 1 cut(s) 828
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HincII GTYRAC 5 cut(s) 523, 574, 740, 823, 1107
HindII GTYRAC 5 cut(s) 523, 574, 740, 823, 1107
HpaI GTTAAC 2 cut(s) 823, 1107
HphI GGTGA 3 cut(s) 611, 737, 1180
Hpy188III TCNNGA 3 cut(s) 592, 914, 968
Hpy99I CGWCG 5 cut(s) 255, 469, 769, 830, 1003
HpyAV CCTTC 3 cut(s) 135, 339, 514
HpyCH4III ACNGT 4 cut(s) 245, 326, 650, 1199
HpyCH4IV ACGT 4 cut(s) 234, 270, 510, 527
HpyCH4V TGCA 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 558
HpyF3I CTNAG 3 cut(s) 97, 476, 1034
HpySE526I ACGT 4 cut(s) 234, 270, 510, 527
Hsp92I GRCGYC 1 cut(s) 828
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 1 cut(s) 438
KroI GCCGGC 1 cut(s) 830
KroNI GCCGGC 1 cut(s) 832
KspAI GTTAAC 2 cut(s) 823, 1107
Kzo9I GATC 6 cut(s) 594, 797, 871, 973, 1003, 1019
LmnI GCTCC 2 cut(s) 627, 984
Lsp1109I GCAGC 3 cut(s) 273, 295, 1042
MaeI CTAG 1 cut(s) 300
MaeII ACGT 4 cut(s) 234, 270, 510, 527
MaeIII GTNAC 3 cut(s) 416, 563, 605
MalI GATC 6 cut(s) 596, 799, 873, 975, 1005, 1021
MboI GATC 6 cut(s) 594, 797, 871, 973, 1003, 1019
MboII GAAGA 4 cut(s) 3, 19, 593, 753
MflI RGATCY 1 cut(s) 1003
MhlI GDGCHC 2 cut(s) 624, 942
MluCI AATT 6 cut(s) 699, 862, 948, 1049, 1080, 1113
MlyI GAGTC 2 cut(s) 735, 745
MmeI TCCRAC 2 cut(s) 981, 1080
MreI CGCCGGCG 1 cut(s) 830
MroNI GCCGGC 1 cut(s) 830
MroXI GAANNNNTTC 1 cut(s) 760
MseI TTAA 8 cut(s) 410, 654, 674, 822, 861, 1083, 1106, 1222
MslI CAYNNNNRTG 2 cut(s) 423, 1166
MspR9I CCNGG 6 cut(s) 168, 569, 578, 613, 669, 679
MvaI CCWGG 1 cut(s) 613
MwoI GCNNNNNNNGC 1 cut(s) 558
NaeI GCCGGC 1 cut(s) 832
NciI CCSGG 5 cut(s) 168, 569, 578, 669, 679
NdeII GATC 6 cut(s) 594, 797, 871, 973, 1003, 1019
NgoMIV GCCGGC 1 cut(s) 830
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 1193
NmeAIII GCCGAG 2 cut(s) 698, 1170
NmuCI GTSAC 1 cut(s) 416
NspV TTCGAA 1 cut(s) 459
OliI CACNNNNGTG 1 cut(s) 1166
PcsI WCGNNNNNNNCGW 6 cut(s) 186, 456, 507, 736, 773, 831
PdiI GCCGGC 1 cut(s) 832
PdmI GAANNNNTTC 1 cut(s) 760
PfeI GAWTC 8 cut(s) 171, 380, 641, 778, 848, 904, 910, 964
PinAI ACCGGT 2 cut(s) 366, 388
PkrI GCNGC 4 cut(s) 263, 285, 1057, 1060
PleI GAGTC 2 cut(s) 735, 744
PmaCI CACGTG 2 cut(s) 511, 528
PmlI CACGTG 2 cut(s) 511, 528
PpsI GAGTC 2 cut(s) 735, 744
Ppu21I YACGTR 3 cut(s) 271, 511, 528
PsiI TTATAA 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 611
PspCI CACGTG 2 cut(s) 511, 528
PspGI CCWGG 1 cut(s) 611
PspN4I GGNNCC 1 cut(s) 1193
PspPI GGNCC 2 cut(s) 369, 1191
PsuI RGATCY 1 cut(s) 1003
RseI CAYNNNNRTG 2 cut(s) 423, 1166
Rsr2I CGGWCCG 1 cut(s) 369
RsrII CGGWCCG 1 cut(s) 369
SacI GAGCTC 1 cut(s) 624
SalI GTCGAC 2 cut(s) 572, 738
SaqAI TTAA 8 cut(s) 410, 654, 674, 822, 861, 1083, 1106, 1222
SatI GCNGC 4 cut(s) 262, 284, 1056, 1059
Sau3AI GATC 6 cut(s) 594, 797, 871, 973, 1003, 1019
Sau96I GGNCC 2 cut(s) 369, 1191
SchI GAGTC 2 cut(s) 735, 745
ScrFI CCNGG 6 cut(s) 168, 569, 578, 613, 669, 679
SduI GDGCHC 2 cut(s) 624, 942
SfcI CTRYAG 1 cut(s) 878
SfuI TTCGAA 1 cut(s) 459
SgrAI CRCCGGYG 1 cut(s) 830
SinI GGWCC 2 cut(s) 369, 1191
SmiMI CAYNNNNRTG 2 cut(s) 423, 1166
SnaBI TACGTA 1 cut(s) 271
Sse9I AATT 6 cut(s) 699, 862, 948, 1049, 1080, 1113
SspMI CTAG 1 cut(s) 300
SstI GAGCTC 1 cut(s) 624
StyD4I CCNGG 6 cut(s) 166, 567, 576, 611, 667, 677
TaaI ACNGT 4 cut(s) 245, 326, 650, 1199
TaiI ACGT 4 cut(s) 237, 273, 513, 530
TaqI TCGA 9 cut(s) 459, 573, 618, 697, 739, 776, 804, 967, 1175
TasI AATT 6 cut(s) 699, 862, 948, 1049, 1080, 1113
TauI GCSGC 1 cut(s) 1061
TfiI GAWTC 8 cut(s) 171, 380, 641, 778, 848, 904, 910, 964
Tru1I TTAA 8 cut(s) 410, 654, 674, 822, 861, 1083, 1106, 1222
Tru9I TTAA 8 cut(s) 410, 654, 674, 822, 861, 1083, 1106, 1222
TscAI CASTG 3 cut(s) 202, 248, 655
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 3 cut(s) 261, 283, 1055
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 654
TspGWI ACGGA 5 cut(s) 321, 361, 482, 906, 1138
TspRI CASTG 3 cut(s) 202, 248, 655
VpaK11BI GGWCC 2 cut(s) 369, 1191
XapI RAATTY 1 cut(s) 699
XmiI GTMKAC 3 cut(s) 573, 739, 877
XmnI GAANNNNTTC 1 cut(s) 760
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.