Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Forward (+)

7464150 .. 7464626

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTTCTCCTCATCCTTTACGCCAAACACTACAAGCGCGACAGCTTCGTCGTCATCGGAGGAACCACCGACTCCAGACCCCCCAGCGGGGCGGGTCTCTATAAAAACTCCAGAATTGACCGGGCCGTCGTCGAGGAGTGCGTCAACACGTGGCTCGACGCCCACTCCACCTGCCCGCTCTACCGCTACCGGGTCAACCCGGAAGACATCCTCCTAATTGAAGATGCCAGAATCCTGCACTACCAGAACAACCAGCCCCAGACTCCCCACCAAAACGACGTCGTCATCAACATCGAAACCGACCCGGGAATCCGCCGCGTCTCGGGGCGCCACTCCTTCGCCTTGGATCAGCGACCCGACTCCTCCTCTCACTACAATACGTTGTCATTCCGGAGGTCCCTCGACAGCTGGACCTGGTTCCAGAAAAAAAAAAAAAAAAAAAAAAAAACCGAACCCGCGGCCGCCGCCAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

158

Amino Acids

18.26

Weight (kDa)

9.62

Isoelectric Point (pI)

68.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
AasI	GACNNNNNNGTC	2 cut(s)	47, 125
AatII	GACGTC	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	327
AccBSI	CCGCTC	1 cut(s)	178
AccII	CGCG	3 cut(s)	39, 318, 458
AccIII	TCCGGA	1 cut(s)	390
AclWI	GGATC	1 cut(s)	354
AcoI	YGGCCR	1 cut(s)	459
AcvI	CACGTG	1 cut(s)	150
AcyI	GRCGYC	3 cut(s)	159, 279, 328
AfiI	CCNNNNNNNGG	5 cut(s)	86, 87, 88, 190, 322
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	3 cut(s)	45, 408, 474
AluI	AGCT	3 cut(s)	45, 408, 474
Alw26I	GTCTC	2 cut(s)	101, 325
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	2 cut(s)	304, 322
Aor13HI	TCCGGA	1 cut(s)	390
AoxI	GGCC	2 cut(s)	123, 459
AspLEI	GCGC	2 cut(s)	39, 330
AspS9I	GGNCC	3 cut(s)	123, 396, 411
AsuC2I	CCSGG	5 cut(s)	122, 191, 200, 305, 306
AvaI	CYCGRG	2 cut(s)	304, 322
AvaII	GGWCC	2 cut(s)	396, 411
BanI	GGYRCC	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	415
BcnI	CCSGG	5 cut(s)	122, 191, 200, 305, 306
BcoDI	GTCTC	2 cut(s)	101, 325
BfoI	RGCGCY	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	4 cut(s)	316, 459, 462, 465
BlsI	GCNGC	4 cut(s)	317, 460, 463, 466
Bme1390I	CCNGG	6 cut(s)	122, 191, 200, 305, 306, 415
Bme18I	GGWCC	2 cut(s)	396, 411
BmeT110I	CYCGRG	2 cut(s)	304, 322
BmgT120I	GGNCC	3 cut(s)	123, 396, 411
BmiI	GGNNCC	4 cut(s)	64, 329, 398, 419
BmrFI	CCNGG	6 cut(s)	122, 191, 200, 305, 306, 415
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	2 cut(s)	58, 94
BpuMI	CCSGG	5 cut(s)	122, 191, 200, 305, 306
BsaAI	YACGTR	1 cut(s)	150
BsaHI	GRCGYC	3 cut(s)	159, 279, 328
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	304, 342, 456
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 87, 88, 190, 322
BseAI	TCCGGA	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	304, 342, 456
BseGI	GGATG	2 cut(s)	12, 207
BseLI	CCNNNNNNNGG	5 cut(s)	86, 87, 88, 190, 322
BseRI	GAGGAG	3 cut(s)	149, 352, 355
BseX3I	CGGCCG	1 cut(s)	459
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	3 cut(s)	39, 318, 458
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	125, 461
BshNI	GGYRCC	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	462
BsiHKCI	CYCGRG	2 cut(s)	304, 322
BsiSI	CCGG	5 cut(s)	121, 190, 200, 305, 391
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	5 cut(s)	86, 87, 88, 190, 322
BsmAI	GTCTC	2 cut(s)	101, 325
BsmBI	CGTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	125, 461
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	2 cut(s)	304, 322
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	346
BspANI	GGCC	2 cut(s)	125, 461
BspEI	TCCGGA	1 cut(s)	390
BspFNI	CGCG	3 cut(s)	39, 318, 458
BspLI	GGNNCC	4 cut(s)	64, 329, 398, 419
BspMI	ACCTGC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	304, 342, 456
BssMI	GATC	1 cut(s)	346
BssNI	GRCGYC	3 cut(s)	159, 279, 328
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	415
BstACI	GRCGYC	3 cut(s)	159, 279, 328
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	12, 207
BstFNI	CGCG	3 cut(s)	39, 318, 458
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	39, 330
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	2 cut(s)	101, 325
BstMBI	GATC	1 cut(s)	346
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	6 cut(s)	120, 189, 198, 303, 304, 413
BstUI	CGCG	3 cut(s)	39, 318, 458
BstV2I	GAAGAC	1 cut(s)	210
BstZI	CGGCCG	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	125, 461
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	12, 207
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	176
CciNI	GCGGCCGC	1 cut(s)	459
CfoI	GCGC	2 cut(s)	39, 330
Cfr13I	GGNCC	3 cut(s)	123, 396, 411
Cfr42I	CCGCGG	1 cut(s)	459
Cfr9I	CCCGGG	1 cut(s)	304
CseI	GACGC	3 cut(s)	130, 167, 307
CsiI	ACCWGGT	1 cut(s)	413
CviJI	RGCY	7 cut(s)	45, 125, 154, 256, 408, 461, 474
CviKI_1	RGCY	7 cut(s)	45, 125, 154, 256, 408, 461, 474
DinI	GGCGCC	1 cut(s)	329
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DrdI	GACNNNNNNGTC	2 cut(s)	47, 125
DseDI	GACNNNNNNGTC	2 cut(s)	47, 125
EaeI	YGGCCR	1 cut(s)	459
EagI	CGGCCG	1 cut(s)	459
EciI	GGCGGA	1 cut(s)	302
EclXI	CGGCCG	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	396, 411
Eco52I	CGGCCG	1 cut(s)	459
Eco72I	CACGTG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	304, 322
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	342
EgeI	GGCGCC	1 cut(s)	329
EheI	GGCGCC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	325
FaiI	YATR	1 cut(s)	102
FaqI	GGGAC	1 cut(s)	382
FauI	CCCGC	4 cut(s)	80, 85, 183, 463
Fnu4HI	GCNGC	4 cut(s)	316, 459, 462, 465
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	4 cut(s)	316, 459, 462, 465
GlaI	GCGC	2 cut(s)	38, 329
GluI	GCNGC	4 cut(s)	316, 459, 462, 465
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	2 cut(s)	58, 94
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	125, 461
HapII	CCGG	5 cut(s)	121, 190, 200, 305, 391
HgaI	GACGC	3 cut(s)	130, 167, 307
HhaI	GCGC	2 cut(s)	39, 330
Hin1I	GRCGYC	3 cut(s)	159, 279, 328
Hin6I	GCGC	2 cut(s)	37, 328
HinP1I	GCGC	2 cut(s)	37, 328
HincII	GTYRAC	2 cut(s)	145, 196
HindII	GTYRAC	2 cut(s)	145, 196
HinfI	GANTC	5 cut(s)	71, 231, 262, 309, 359
HpaII	CCGG	5 cut(s)	121, 190, 200, 305, 391
Hpy166II	GTNNAC	2 cut(s)	145, 196
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	4 cut(s)	75, 111, 391, 421
Hpy8I	GTNNAC	2 cut(s)	145, 196
Hpy99I	CGWCG	6 cut(s)	53, 131, 134, 161, 281, 284
HpyAV	CCTTC	1 cut(s)	346
HpyCH4IV	ACGT	3 cut(s)	149, 279, 380
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpySE526I	ACGT	3 cut(s)	149, 279, 380
Hsp92I	GRCGYC	3 cut(s)	159, 279, 328
HspAI	GCGC	2 cut(s)	37, 328
KasI	GGCGCC	1 cut(s)	327
Kpn2I	TCCGGA	1 cut(s)	390
KspI	CCGCGG	1 cut(s)	459
Kzo9I	GATC	1 cut(s)	346
LweI	GCATC	1 cut(s)	214
MabI	ACCWGGT	1 cut(s)	413
MaeII	ACGT	3 cut(s)	149, 279, 380
MalI	GATC	1 cut(s)	348
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	1 cut(s)	346
MboII	GAAGA	2 cut(s)	215, 233
MluCI	AATT	2 cut(s)	114, 216
Mly113I	GGCGCC	1 cut(s)	328
MlyI	GAGTC	3 cut(s)	65, 256, 353
MnlI	CCTC	8 cut(s)	20, 53, 127, 221, 373, 376, 387, 410
MroI	TCCGGA	1 cut(s)	390
MspA1I	CMGCKG	3 cut(s)	87, 408, 458
MspI	CCGG	5 cut(s)	121, 190, 200, 305, 391
MspR9I	CCNGG	6 cut(s)	122, 191, 200, 305, 306, 415
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	3 cut(s)	39, 318, 458
MwoI	GCNNNNNNNGC	1 cut(s)	464
NarI	GGCGCC	1 cut(s)	328
NciI	CCSGG	5 cut(s)	122, 191, 200, 305, 306
NdeII	GATC	1 cut(s)	346
NlaIV	GGNNCC	4 cut(s)	64, 329, 398, 419
NotI	GCGGCCGC	1 cut(s)	459
PaqCI	CACCTGC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	231, 309
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	317, 460, 463, 466
PleI	GAGTC	3 cut(s)	65, 256, 353
PluTI	GGCGCC	1 cut(s)	331
PmaCI	CACGTG	1 cut(s)	150
PmlI	CACGTG	1 cut(s)	150
PpsI	GAGTC	3 cut(s)	65, 256, 353
Ppu21I	YACGTR	1 cut(s)	150
PpuMI	RGGWCCY	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	413
PspCI	CACGTG	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	4 cut(s)	64, 329, 398, 419
PspPI	GGNCC	3 cut(s)	123, 396, 411
PspPPI	RGGWCCY	1 cut(s)	396
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	408
SacII	CCGCGG	1 cut(s)	459
SatI	GCNGC	4 cut(s)	316, 459, 462, 465
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	3 cut(s)	123, 396, 411
SchI	GAGTC	3 cut(s)	65, 256, 353
ScrFI	CCNGG	6 cut(s)	122, 191, 200, 305, 306, 415
SetI	ASST	9 cut(s)	47, 152, 173, 282, 383, 398, 410, 416, 476
SexAI	ACCWGGT	1 cut(s)	413
SfaNI	GCATC	1 cut(s)	214
SfoI	GGCGCC	1 cut(s)	329
Sfr303I	CCGCGG	1 cut(s)	459
SgrBI	CCGCGG	1 cut(s)	459
SinI	GGWCC	2 cut(s)	396, 411
SmaI	CCCGGG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	114, 216
SspDI	GGCGCC	1 cut(s)	327
StyD4I	CCNGG	6 cut(s)	120, 189, 198, 303, 304, 413
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	3 cut(s)	152, 282, 383
TaqI	TCGA	4 cut(s)	132, 156, 294, 402
TasI	AATT	2 cut(s)	114, 216
TauI	GCSGC	4 cut(s)	318, 461, 464, 467
TfiI	GAWTC	2 cut(s)	231, 309
TspMI	CCCGGG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	396, 411
XmaI	CCCGGG	1 cut(s)	304
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.