Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Reverse (-)

44558457 .. 44559170

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCCATAATGGTCGGAGTTCTGATGACTCTGTTCTCCTTCATGTTTCTTCTCCTCCTCTACGCCAAGCACTGCAAGCGCGGCAGCTTCGTCGTCATAGGAGGAACCACTGACTCCAGATCTCCCGGCGGGGTGGGTCTCCGTAAAAACTCAGGAATCGACCAGGTCATCGTCGATTCCCTCCCGGTTTTCCAGTTCAGGTCGCTCAGGGAACACAAGGACGGCCTCGAATGCACAGTCTGCCTCACCCGAATCGAGCCCACCGAGGTCCTCCGCCTCCTCTCGAAATGCAAGCACCCCTTCCACGTGGAGTGCGTTGACAAGTGGCTCGACGCCCACTCGACCTGCCTGCTCTGCCGCTGCCGGGTCGACCCGGAGGTCCCTCGACAGCTGGATCTGGTTCCAGAAAAAAATCGAACCCGTGGCCGCCGCCGGAAGCCAAGAACGTCCGAGAAAAGACAGCCTCCTTTTAAGCCACGACAAAACGAGGCTGGAGCAAAGAATCATCGTCTCCTCCCCCAGATCAAGCAATACCGGCGATGGTGGGTTCCACCAACGATGGAGCGACGTACAACAGTCCGATCTTCTCTACCTTCGCTCCGAGATGATCATAAGCGAGAACGGACTGACACGTCAGAGGCAGGAACAAAGATGTCCTTCTTTGACAGGTTCTGGTACCTCTCGGGAGGCAGCAAATTAAGCAGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

237

Amino Acids

27.54

Weight (kDa)

10.23

Isoelectric Point (pI)

67.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	77 - 120	4.3e-11	Ring finger domain
zf-RING_11	PF17123	77 - 106	6.5e-08	RING-like zinc finger
zf-rbx1	PF12678	89 - 120	1.6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	377, 631
Acc36I	ACCTGC	1 cut(s)	353
Acc65I	GGTACC	1 cut(s)	675
AccB1I	GGYRCC	1 cut(s)	675
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	81
AciI	CCGC	6 cut(s)	81, 129, 274, 358, 427, 430
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	2 cut(s)	3, 424
AcvI	CACGTG	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	2 cut(s)	571, 677
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	1 cut(s)	630
AjiI	CACGTC	1 cut(s)	633
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	87, 391
AluI	AGCT	2 cut(s)	87, 391
Alw26I	GTCTC	2 cut(s)	143, 515
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	672
Ama87I	CYCGRG	1 cut(s)	682
AoxI	GGCC	3 cut(s)	3, 223, 424
ApeKI	GCWGC	3 cut(s)	84, 360, 690
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
Asp718I	GGTACC	1 cut(s)	675
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	268, 379
AsuC2I	CCSGG	4 cut(s)	126, 185, 365, 374
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	682
AvaII	GGWCC	2 cut(s)	268, 379
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	675
BanII	GRGCYC	1 cut(s)	261
BbrPI	CACGTG	1 cut(s)	307
BbvI	GCAGC	3 cut(s)	96, 347, 702
BccI	CCATC	2 cut(s)	534, 553
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	4 cut(s)	73, 107, 331, 365
BciT130I	CCWGG	1 cut(s)	164
BclI	TGATCA	1 cut(s)	607
BcnI	CCSGG	4 cut(s)	126, 185, 365, 374
BcoDI	GTCTC	2 cut(s)	143, 515
BfuAI	ACCTGC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	7 cut(s)	82, 85, 358, 361, 427, 430, 691
BlsI	GCNGC	7 cut(s)	83, 86, 359, 362, 428, 431, 692
Bme1390I	CCNGG	5 cut(s)	126, 164, 185, 365, 374
Bme18I	GGWCC	2 cut(s)	268, 379
BmeT110I	CYCGRG	1 cut(s)	682
BmgBI	CACGTC	1 cut(s)	633
BmgT120I	GGNCC	2 cut(s)	268, 379
BmiI	GGNNCC	5 cut(s)	106, 381, 402, 549, 677
BmrFI	CCNGG	5 cut(s)	126, 164, 185, 365, 374
BpmI	CTGGAG	2 cut(s)	100, 513
Bpu10I	CCTNAGC	1 cut(s)	206
BpuMI	CCSGG	4 cut(s)	126, 185, 365, 374
BsaAI	YACGTR	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	264, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	1 cut(s)	534
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	264, 421
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	2 cut(s)	165, 220
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	4 cut(s)	44, 47, 269, 503
BseXI	GCAGC	3 cut(s)	96, 347, 702
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	5, 225, 426
BshNI	GGYRCC	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	6 cut(s)	126, 185, 364, 374, 433, 535
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	2 cut(s)	143, 515
BsmBI	CGTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	3 cut(s)	5, 225, 426
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	682
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	6 cut(s)	119, 394, 522, 581, 607, 704
BspACI	CCGC	6 cut(s)	81, 129, 274, 358, 427, 430
BspANI	GGCC	3 cut(s)	5, 225, 426
BspCNI	CTCAG	2 cut(s)	164, 219
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	5 cut(s)	106, 381, 402, 549, 677
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	675
BspTNI	GGTCTC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	534
BssECI	CCNNGG	2 cut(s)	264, 421
BssMI	GATC	6 cut(s)	119, 394, 522, 581, 607, 704
BssNI	GRCGYC	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	238, 577
BstACI	GRCGYC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	307
BstC8I	GCNNGC	3 cut(s)	77, 293, 350
BstDEI	CTNAG	2 cut(s)	151, 206
BstDSI	CCRYGG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	6 cut(s)	122, 397, 525, 584, 610, 707
BstMAI	GTCTC	2 cut(s)	143, 515
BstMBI	GATC	6 cut(s)	119, 394, 522, 581, 607, 704
BstMWI	GCNNNNNNNGC	7 cut(s)	76, 81, 231, 240, 354, 535, 699
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	5 cut(s)	124, 162, 183, 363, 372
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	96, 347, 702
BstX2I	RGATCY	2 cut(s)	119, 394
BstYI	RGATCY	2 cut(s)	119, 394
BsuRI	GGCC	3 cut(s)	5, 225, 426
BtgI	CCRYGG	1 cut(s)	421
BtgZI	GCGATG	1 cut(s)	553
BtrI	CACGTC	1 cut(s)	633
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	70, 108
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	3 cut(s)	77, 293, 350
CaiI	CAGNNNCTG	1 cut(s)	672
CfoI	GCGC	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	534
Cfr13I	GGNCC	2 cut(s)	268, 379
CseI	GACGC	1 cut(s)	341
CsiI	ACCWGGT	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	570, 676
CviAII	CATG	2 cut(s)	43, 708
CviQI	GTAC	2 cut(s)	570, 676
DdeI	CTNAG	2 cut(s)	151, 206
DpnI	GATC	6 cut(s)	121, 396, 524, 583, 609, 706
DpnII	GATC	6 cut(s)	119, 394, 522, 581, 607, 704
DrdI	GACNNNNNNGTC	2 cut(s)	377, 631
DseDI	GACNNNNNNGTC	2 cut(s)	377, 631
EaeI	YGGCCR	2 cut(s)	3, 424
EciI	GGCGGA	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	268, 379
Eco72I	CACGTG	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	682
EcoO109I	RGGNCCY	2 cut(s)	268, 379
EcoRII	CCWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	515
FaeI	CATG	2 cut(s)	46, 711
FaiI	YATR	5 cut(s)	8, 44, 98, 612, 709
FalI	AAGNNNNNCTT	4 cut(s)	284, 316, 641, 673
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	2 cut(s)	42, 707
FauI	CCCGC	1 cut(s)	122
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	7 cut(s)	82, 85, 358, 361, 427, 430, 691
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	7 cut(s)	82, 85, 358, 361, 427, 430, 691
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	7 cut(s)	82, 85, 358, 361, 427, 430, 691
GsuI	CTGGAG	2 cut(s)	100, 513
HaeIII	GGCC	3 cut(s)	5, 225, 426
HapII	CCGG	6 cut(s)	126, 185, 364, 374, 433, 535
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	46, 711
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HincII	GTYRAC	2 cut(s)	319, 370
HindII	GTYRAC	2 cut(s)	319, 370
HinfI	GANTC	6 cut(s)	28, 113, 156, 176, 252, 502
HpaII	CCGG	6 cut(s)	126, 185, 364, 374, 433, 535
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	319, 370
Hpy188I	TCNGA	6 cut(s)	17, 24, 451, 581, 602, 637
Hpy188III	TCNNGA	5 cut(s)	117, 153, 283, 404, 684
Hpy8I	GTNNAC	2 cut(s)	319, 370
Hpy99I	CGWCG	4 cut(s)	95, 176, 335, 570
HpyAV	CCTTC	4 cut(s)	49, 310, 603, 667
HpyCH4III	ACNGT	2 cut(s)	238, 577
HpyCH4IV	ACGT	4 cut(s)	306, 446, 568, 632
HpyCH4V	TGCA	3 cut(s)	75, 234, 291
HpyF10VI	GCNNNNNNNGC	7 cut(s)	76, 81, 231, 240, 354, 535, 699
HpyF3I	CTNAG	2 cut(s)	151, 206
HpySE526I	ACGT	4 cut(s)	306, 446, 568, 632
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	46, 711
HspAI	GCGC	1 cut(s)	79
KpnI	GGTACC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	6 cut(s)	119, 394, 522, 581, 607, 704
LmnI	GCTCC	3 cut(s)	494, 562, 603
Lsp1109I	GCAGC	3 cut(s)	96, 347, 702
MabI	ACCWGGT	1 cut(s)	162
MaeII	ACGT	4 cut(s)	306, 446, 568, 632
MalI	GATC	6 cut(s)	121, 396, 524, 583, 609, 706
MboI	GATC	6 cut(s)	119, 394, 522, 581, 607, 704
MboII	GAAGA	2 cut(s)	41, 576
MflI	RGATCY	2 cut(s)	119, 394
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	695
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	22, 107
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	471, 698
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	360, 391
MspI	CCGG	6 cut(s)	126, 185, 364, 374, 433, 535
MspR9I	CCNGG	5 cut(s)	126, 164, 185, 365, 374
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	7 cut(s)	76, 81, 231, 240, 354, 535, 699
NciI	CCSGG	4 cut(s)	126, 185, 365, 374
NdeII	GATC	6 cut(s)	119, 394, 522, 581, 607, 704
NlaIII	CATG	2 cut(s)	46, 711
NlaIV	GGNNCC	5 cut(s)	106, 381, 402, 549, 677
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 312
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	4 cut(s)	156, 176, 252, 502
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	7 cut(s)	83, 86, 359, 362, 428, 431, 692
PleI	GAGTC	2 cut(s)	22, 107
PmaCI	CACGTG	1 cut(s)	307
PmlI	CACGTG	1 cut(s)	307
PpsI	GAGTC	2 cut(s)	22, 107
Ppu21I	YACGTR	1 cut(s)	307
PpuMI	RGGWCCY	2 cut(s)	268, 379
Psp5II	RGGWCCY	2 cut(s)	268, 379
Psp6I	CCWGG	1 cut(s)	162
PspCI	CACGTG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	5 cut(s)	106, 381, 402, 549, 677
PspPI	GGNCC	2 cut(s)	268, 379
PspPPI	RGGWCCY	2 cut(s)	268, 379
PstNI	CAGNNNCTG	1 cut(s)	672
PsuI	RGATCY	2 cut(s)	119, 394
PsyI	GACNNNGTC	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	2 cut(s)	571, 677
RsaNI	GTAC	2 cut(s)	570, 676
SalI	GTCGAC	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	471, 698
SatI	GCNGC	7 cut(s)	82, 85, 358, 361, 427, 430, 691
Sau3AI	GATC	6 cut(s)	119, 394, 522, 581, 607, 704
Sau96I	GGNCC	2 cut(s)	268, 379
SchI	GAGTC	2 cut(s)	22, 107
ScrFI	CCNGG	5 cut(s)	126, 164, 185, 365, 374
SduI	GDGCHC	1 cut(s)	261
SexAI	ACCWGGT	1 cut(s)	162
SinI	GGWCC	2 cut(s)	268, 379
Sse9I	AATT	1 cut(s)	695
SsiI	CCGC	6 cut(s)	81, 129, 274, 358, 427, 430
StyD4I	CCNGG	5 cut(s)	124, 162, 183, 363, 372
TaaI	ACNGT	2 cut(s)	238, 577
TaiI	ACGT	4 cut(s)	309, 449, 571, 635
TasI	AATT	1 cut(s)	695
TauI	GCSGC	4 cut(s)	84, 360, 429, 432
TfiI	GAWTC	4 cut(s)	156, 176, 252, 502
Tru1I	TTAA	2 cut(s)	471, 698
Tru9I	TTAA	2 cut(s)	471, 698
TscAI	CASTG	2 cut(s)	77, 115
TseI	GCWGC	3 cut(s)	84, 360, 690
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	2 cut(s)	131, 637
TspRI	CASTG	2 cut(s)	77, 115
Tth111I	GACNNNGTC	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	268, 379
XmiI	GTMKAC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.