Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Reverse (-)

43148430 .. 43148804

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029692

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTAATTTTTCATTACCATCTAGGTACCAGAACCAGAGCAGACATTGCTACAACGTTTGCTTCACCGCCGCCACTTGTTAATGTGGACACCGCCGAGAAACCCAAGTCGTTCCGGCCCAGCATGGCCATAATGGTTGGAGTTCTGACGACTTTGTTCTCCTTCACGTTTCTTCTACTCCTCTACGCCAAGCACTGCAAGAGCGGCAGCTTCGTCGTCATAGGAGGAACCGCCGATTCCGGACCTCCAGGCGGAGCAGGTCTCCGTAAAAACTTCGGAATCGACTGGGCTATCGTCGAGTCCTTCCCGATTTTCCTATTCAGGTCACTCCGGGGACACAAGAATGGCCTCGAATGTGTCGTCTGCCTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

125

Amino Acids

13.45

Weight (kDa)

9.45

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	248
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	6 cut(s)	68, 71, 93, 204, 231, 252
AclI	AACGTT	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	126
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	266
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	3 cut(s)	116, 126, 346
ApeKI	GCWGC	1 cut(s)	207
ArsI	GACNNNNNNTTYG	1 cut(s)	345
Asp718I	GGTACC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	117, 242
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	57, 361
AvaII	GGWCC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	71, 205, 208
BlsI	GCNGC	3 cut(s)	72, 206, 209
Bme1390I	CCNGG	2 cut(s)	249, 332
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	117, 242
BmiI	GGNNCC	2 cut(s)	28, 229
BmrFI	CCNGG	2 cut(s)	249, 332
BmrI	ACTGGG	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	295
BplI	GAGNNNNNCTC	2 cut(s)	246, 278
BpmI	CTGGAG	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	219
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	3 cut(s)	118, 128, 348
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	115, 240, 331
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	118, 128, 348
Bso31I	GGTCTC	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	239
BspACI	CCGC	6 cut(s)	68, 71, 93, 204, 231, 252
BspANI	GGCC	3 cut(s)	118, 128, 348
BspEI	TCCGGA	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	28, 229
BspMI	ACCTGC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 204
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	247, 330
BstV1I	GCAGC	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	118, 128, 348
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	117, 242
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	5 cut(s)	118, 128, 210, 290, 348
CviKI_1	RGCY	5 cut(s)	118, 128, 210, 290, 348
CviQI	GTAC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	247
FaeI	CATG	1 cut(s)	127
FaiI	YATR	3 cut(s)	125, 131, 221
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	71, 205, 208
Fsp4HI	GCNGC	3 cut(s)	71, 205, 208
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	3 cut(s)	71, 205, 208
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	118, 128, 348
HapII	CCGG	3 cut(s)	115, 240, 331
Hin1II	CATG	1 cut(s)	127
HinfI	GANTC	3 cut(s)	236, 279, 299
HpaII	CCGG	3 cut(s)	115, 240, 331
HphI	GGTGA	2 cut(s)	57, 361
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	147, 278
Hpy188III	TCNNGA	2 cut(s)	240, 307
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	2 cut(s)	218, 299
HpyAV	CCTTC	2 cut(s)	172, 313
HpyCH4IV	ACGT	2 cut(s)	56, 167
HpyCH4V	TGCA	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 204
HpySE526I	ACGT	2 cut(s)	56, 167
Hsp92II	CATG	1 cut(s)	127
Kpn2I	TCCGGA	1 cut(s)	239
KpnI	GGTACC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	2 cut(s)	56, 167
MaeIII	GTNAC	1 cut(s)	324
MbiI	CCGCTC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	1 cut(s)	6
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	191, 218, 255, 359
Mox20I	TGGCCA	1 cut(s)	128
MroI	TCCGGA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	3 cut(s)	115, 240, 331
MspR9I	CCNGG	2 cut(s)	249, 332
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	47, 204
NciI	CCSGG	1 cut(s)	332
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	2 cut(s)	28, 229
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	236, 279
PkrI	GCNGC	3 cut(s)	72, 206, 209
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp1406I	AACGTT	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	28, 229
PspPI	GGNCC	2 cut(s)	117, 242
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	71, 205, 208
Sau96I	GGNCC	2 cut(s)	117, 242
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	249, 332
SetI	ASST	8 cut(s)	28, 59, 170, 212, 247, 262, 326, 374
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	6 cut(s)	68, 71, 93, 204, 231, 252
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	247, 330
TaiI	ACGT	2 cut(s)	59, 170
TaqI	TCGA	3 cut(s)	282, 297, 351
TasI	AATT	1 cut(s)	6
TauI	GCSGC	2 cut(s)	73, 207
TfiI	GAWTC	2 cut(s)	236, 279
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	324
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	242
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.