Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005996.1

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Forward (+)

122442 .. 122825

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005996.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgtttcttctcctcctctacgccaagcactacaagcgcagcagcttcgtcgtcatcggaggaaccaccgactccggacctcctagcggcgcaggtctctataaaaactccggaatcgacctggccgtcgtcgaggagtgcgtcgacacgtggctcgacgcccactccacctgcccgctttgccgctaccgggtcgacccggaagacatcctcctaatcgaagacgcaagaatcctgcactaccagaacagccagccccagactccccaccaaaacgacgtcgtcatcaacatcgaaacagacctgggaatccgccacgtctcggggtgccactccttcgccttagaccagcgacccgactcctcatctcactacaatacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

127

Amino Acids

14.16

Weight (kDa)

5.3

Isoelectric Point (pI)

64.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
AasI	GACNNNNNNGTC	1 cut(s)	125
AatII	GACGTC	1 cut(s)	282
Acc36I	ACCTGC	2 cut(s)	83, 179
AccB1I	GGYRCC	1 cut(s)	327
AccI	GTMKAC	2 cut(s)	144, 195
AccIII	TCCGGA	2 cut(s)	74, 110
AciI	CCGC	4 cut(s)	87, 176, 184, 313
AcoI	YGGCCR	1 cut(s)	123
AcvI	CACGTG	1 cut(s)	150
AcyI	GRCGYC	2 cut(s)	159, 279
AfiI	CCNNNNNNNGG	3 cut(s)	86, 190, 322
AflIII	ACRYGT	1 cut(s)	147
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	120, 303
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	101, 325
Ama87I	CYCGRG	1 cut(s)	322
Aor13HI	TCCGGA	2 cut(s)	74, 110
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	39, 42
AspLEI	GCGC	2 cut(s)	39, 92
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	2 cut(s)	191, 200
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	210, 228
BbvI	GCAGC	2 cut(s)	51, 54
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	4 cut(s)	28, 31, 62, 65
BciT130I	CCWGG	2 cut(s)	122, 305
BcnI	CCSGG	2 cut(s)	191, 200
BcoDI	GTCTC	2 cut(s)	101, 325
BfaI	CTAG	1 cut(s)	84
BfuAI	ACCTGC	2 cut(s)	83, 179
BisI	GCNGC	4 cut(s)	40, 43, 88, 184
BlsI	GCNGC	4 cut(s)	41, 44, 89, 185
Bme1390I	CCNGG	4 cut(s)	122, 191, 200, 305
Bme18I	GGWCC	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	322
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	64, 329
BmrFI	CCNGG	4 cut(s)	122, 191, 200, 305
BpiI	GAAGAC	2 cut(s)	210, 228
BpuMI	CCSGG	2 cut(s)	191, 200
BsaAI	YACGTR	2 cut(s)	150, 381
BsaHI	GRCGYC	2 cut(s)	159, 279
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	2 cut(s)	74, 110
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 190, 322
BseAI	TCCGGA	2 cut(s)	74, 110
BseBI	CCWGG	2 cut(s)	122, 305
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	86, 190, 322
BseRI	GAGGAG	3 cut(s)	5, 149, 352
BseXI	GCAGC	2 cut(s)	51, 54
BsgI	GTGCAG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	4 cut(s)	75, 111, 190, 200
BslI	CCNNNNNNNGG	3 cut(s)	86, 190, 322
BsmAI	GTCTC	2 cut(s)	101, 325
BsmBI	CGTCTC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	322
Bsp13I	TCCGGA	2 cut(s)	74, 110
BspACI	CCGC	4 cut(s)	87, 176, 184, 313
BspANI	GGCC	1 cut(s)	125
BspEI	TCCGGA	2 cut(s)	74, 110
BspLI	GGNNCC	2 cut(s)	64, 329
BspMI	ACCTGC	2 cut(s)	83, 179
BspT107I	GGYRCC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	304
BssNI	GRCGYC	2 cut(s)	159, 279
Bst2UI	CCWGG	2 cut(s)	122, 305
BstACI	GRCGYC	2 cut(s)	159, 279
BstBAI	YACGTR	2 cut(s)	150, 381
BstC8I	GCNNGC	2 cut(s)	176, 254
BstDEI	CTNAG	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	39, 92
BstMAI	GTCTC	2 cut(s)	101, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 180
BstNI	CCWGG	2 cut(s)	122, 305
BstSCI	CCNGG	4 cut(s)	120, 189, 198, 303
BstSNI	TACGTA	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	51, 54
BstV2I	GAAGAC	2 cut(s)	210, 228
BsuRI	GGCC	1 cut(s)	125
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	207
BveI	ACCTGC	2 cut(s)	83, 179
Cac8I	GCNNGC	2 cut(s)	176, 254
CfoI	GCGC	2 cut(s)	39, 92
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	3 cut(s)	130, 167, 233
CviJI	RGCY	5 cut(s)	45, 125, 154, 252, 256
CviKI_1	RGCY	5 cut(s)	45, 125, 154, 252, 256
DdeI	CTNAG	1 cut(s)	343
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	302
Eco105I	TACGTA	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	120, 303
Esp3I	CGTCTC	1 cut(s)	325
FaiI	YATR	1 cut(s)	102
FauI	CCCGC	1 cut(s)	183
FblI	GTMKAC	2 cut(s)	144, 195
Fnu4HI	GCNGC	4 cut(s)	40, 43, 88, 184
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	4 cut(s)	40, 43, 88, 184
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	2 cut(s)	38, 91
GluI	GCNGC	4 cut(s)	40, 43, 88, 184
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	4 cut(s)	75, 111, 190, 200
HgaI	GACGC	3 cut(s)	130, 167, 233
HhaI	GCGC	2 cut(s)	39, 92
Hin1I	GRCGYC	2 cut(s)	159, 279
Hin6I	GCGC	2 cut(s)	37, 90
HinP1I	GCGC	2 cut(s)	37, 90
HincII	GTYRAC	2 cut(s)	145, 196
HindII	GTYRAC	2 cut(s)	145, 196
HinfI	GANTC	6 cut(s)	71, 114, 231, 262, 309, 359
HpaII	CCGG	4 cut(s)	75, 111, 190, 200
Hpy166II	GTNNAC	2 cut(s)	145, 196
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	2 cut(s)	75, 111
Hpy8I	GTNNAC	2 cut(s)	145, 196
Hpy99I	CGWCG	7 cut(s)	53, 131, 134, 146, 161, 281, 284
HpyAV	CCTTC	1 cut(s)	346
HpyCH4IV	ACGT	4 cut(s)	149, 279, 318, 380
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 180
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	4 cut(s)	149, 279, 318, 380
Hsp92I	GRCGYC	2 cut(s)	159, 279
HspAI	GCGC	2 cut(s)	37, 90
Kpn2I	TCCGGA	2 cut(s)	74, 110
Lsp1109I	GCAGC	2 cut(s)	51, 54
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	4 cut(s)	149, 279, 318, 380
MboII	GAAGA	2 cut(s)	215, 233
MlyI	GAGTC	3 cut(s)	65, 256, 353
MnlI	CCTC	7 cut(s)	23, 26, 53, 90, 127, 221, 373
MroI	TCCGGA	2 cut(s)	74, 110
MspI	CCGG	4 cut(s)	75, 111, 190, 200
MspR9I	CCNGG	4 cut(s)	122, 191, 200, 305
MvaI	CCWGG	2 cut(s)	122, 305
MwoI	GCNNNNNNNGC	2 cut(s)	34, 180
NciI	CCSGG	2 cut(s)	191, 200
NlaIV	GGNNCC	2 cut(s)	64, 329
PaqCI	CACCTGC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 138
PfeI	GAWTC	3 cut(s)	114, 231, 309
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	41, 44, 89, 185
PleI	GAGTC	3 cut(s)	65, 256, 353
PmaCI	CACGTG	1 cut(s)	150
PmlI	CACGTG	1 cut(s)	150
PpsI	GAGTC	3 cut(s)	65, 256, 353
Ppu21I	YACGTR	2 cut(s)	150, 381
Psp6I	CCWGG	2 cut(s)	120, 303
PspCI	CACGTG	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	120, 303
PspN4I	GGNNCC	2 cut(s)	64, 329
PspPI	GGNCC	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	281
SalI	GTCGAC	2 cut(s)	143, 194
SatI	GCNGC	4 cut(s)	40, 43, 88, 184
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	3 cut(s)	65, 256, 353
ScrFI	CCNGG	4 cut(s)	122, 191, 200, 305
SinI	GGWCC	1 cut(s)	77
SnaBI	TACGTA	1 cut(s)	381
SsiI	CCGC	4 cut(s)	87, 176, 184, 313
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	4 cut(s)	120, 189, 198, 303
TaiI	ACGT	4 cut(s)	152, 282, 321, 383
TaqI	TCGA	7 cut(s)	117, 132, 144, 156, 195, 219, 294
TauI	GCSGC	2 cut(s)	90, 186
TfiI	GAWTC	3 cut(s)	114, 231, 309
TseI	GCWGC	2 cut(s)	39, 42
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	77
XmiI	GTMKAC	2 cut(s)	144, 195
XspI	CTAG	1 cut(s)	84
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.