Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Forward (+)

24139228 .. 24139683

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG238800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTTCTTCTCCTCCTCTACGCCAAGCACTGCAAGCGCGGCAGCTTCGTCGTCATAGGAGGAACCACCGACTCCGGATCTCCCGGCGGGGTGGGTCTCCGTAAAAACTCAGGAATCGACCAGGCCTTCGTCGAGTCCCTCCCGGTTTTCCAGTTCAGGTCGCTCAGGGAACACAAGGACGGCCTCGAATGCACGGTTTGCCTCACCCGAATCGAGCCCACCGAGGTCCTCCGCCTCCTCCCGAAATGCAAGCACCCCTTCCACGTGGAGTGCGTCGACACGTGGCTCGACGCCCACTCGACCTGCCTGCTCTGCAGCTACCGGGTCGACCCGGAAGACATCCTCCTAATCGAAGACGCTAGAATCCTGCACTACCAGAACAGCCAGCCCCAGACTCCCCACCAAAACGACGTCGTCATCAACATCGAAACCGACCCAGGAATCCGCAGCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

151

Amino Acids

16.96

Weight (kDa)

5.94

Isoelectric Point (pI)

65.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	63 - 105	8.2e-11	Ring finger domain
zf-RING_11	PF17123	63 - 92	3.1e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	414
Acc36I	ACCTGC	1 cut(s)	311
AccI	GTMKAC	2 cut(s)	276, 327
AccII	CGCG	1 cut(s)	39
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	4 cut(s)	39, 87, 232, 445
AclWI	GGATC	1 cut(s)	85
AcvI	CACGTG	2 cut(s)	265, 282
AcyI	GRCGYC	2 cut(s)	291, 411
AflIII	ACRYGT	1 cut(s)	279
AjnI	CCWGG	2 cut(s)	120, 436
AluBI	AGCT	2 cut(s)	45, 318
AluI	AGCT	2 cut(s)	45, 318
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	85
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	2 cut(s)	123, 181
ApeKI	GCWGC	3 cut(s)	42, 315, 447
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	4 cut(s)	84, 143, 323, 332
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	219
BbrPI	CACGTG	2 cut(s)	265, 282
BbsI	GAAGAC	2 cut(s)	342, 360
BbvI	GCAGC	2 cut(s)	54, 327
BceAI	ACGGC	1 cut(s)	196
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 289, 323
BciT130I	CCWGG	2 cut(s)	122, 438
BcnI	CCSGG	4 cut(s)	84, 143, 323, 332
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	2 cut(s)	360, 454
BfmI	CTRYAG	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	4 cut(s)	40, 43, 316, 448
BlsI	GCNGC	4 cut(s)	41, 44, 317, 449
Bme1390I	CCNGG	6 cut(s)	84, 122, 143, 323, 332, 438
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	6 cut(s)	84, 122, 143, 323, 332, 438
BpiI	GAAGAC	2 cut(s)	342, 360
Bpu10I	CCTNAGC	1 cut(s)	164
BpuMI	CCSGG	4 cut(s)	84, 143, 323, 332
BsaAI	YACGTR	2 cut(s)	265, 282
BsaHI	GRCGYC	2 cut(s)	291, 411
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	222, 436
BsaWI	WCCGGW	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	151
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	122, 438
BseDI	CCNNGG	2 cut(s)	222, 436
BseGI	GGATG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	123, 178
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	2 cut(s)	5, 227
BseXI	GCAGC	2 cut(s)	54, 327
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	125, 183
BsiSI	CCGG	5 cut(s)	75, 84, 143, 322, 332
BslFI	GGGAC	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	125, 183
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	77
BspACI	CCGC	4 cut(s)	39, 87, 232, 445
BspANI	GGCC	2 cut(s)	125, 183
BspCNI	CTCAG	2 cut(s)	122, 177
BspEI	TCCGGA	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	317
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	222, 436
BssMI	GATC	1 cut(s)	77
BssNI	GRCGYC	2 cut(s)	291, 411
Bst2UI	CCWGG	2 cut(s)	122, 438
Bst4CI	ACNGT	1 cut(s)	196
BstACI	GRCGYC	2 cut(s)	291, 411
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstBAI	YACGTR	2 cut(s)	265, 282
BstC8I	GCNNGC	4 cut(s)	35, 251, 308, 386
BstDEI	CTNAG	2 cut(s)	109, 164
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 39, 189, 198, 312
BstNI	CCWGG	2 cut(s)	122, 438
BstSCI	CCNGG	6 cut(s)	82, 120, 141, 321, 330, 436
BstSFI	CTRYAG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	54, 327
BstV2I	GAAGAC	2 cut(s)	342, 360
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	125, 183
BtsCI	GGATG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	4 cut(s)	35, 251, 308, 386
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	4 cut(s)	262, 299, 365, 439
CviJI	RGCY	8 cut(s)	45, 125, 183, 217, 286, 318, 384, 388
CviKI_1	RGCY	8 cut(s)	45, 125, 183, 217, 286, 318, 384, 388
DdeI	CTNAG	2 cut(s)	109, 164
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	226
Eco72I	CACGTG	2 cut(s)	265, 282
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	120, 436
EcoT38I	GRGCYC	1 cut(s)	219
FaiI	YATR	1 cut(s)	56
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	121
FauI	CCCGC	1 cut(s)	80
FblI	GTMKAC	2 cut(s)	276, 327
Fnu4HI	GCNGC	4 cut(s)	40, 43, 316, 448
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	40, 43, 316, 448
FspBI	CTAG	2 cut(s)	360, 454
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	4 cut(s)	40, 43, 316, 448
HaeIII	GGCC	2 cut(s)	125, 183
HapII	CCGG	5 cut(s)	75, 84, 143, 322, 332
HgaI	GACGC	4 cut(s)	262, 299, 365, 439
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	2 cut(s)	291, 411
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	2 cut(s)	277, 328
HindII	GTYRAC	2 cut(s)	277, 328
HinfI	GANTC	7 cut(s)	71, 114, 134, 210, 363, 394, 441
HpaII	CCGG	5 cut(s)	75, 84, 143, 322, 332
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	277, 328
Hpy188III	TCNNGA	3 cut(s)	75, 111, 241
Hpy8I	GTNNAC	2 cut(s)	277, 328
Hpy99I	CGWCG	6 cut(s)	53, 134, 278, 293, 413, 416
HpyAV	CCTTC	2 cut(s)	136, 268
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	3 cut(s)	264, 281, 411
HpyCH4V	TGCA	5 cut(s)	33, 192, 249, 315, 370
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 39, 189, 198, 312
HpyF3I	CTNAG	2 cut(s)	109, 164
HpySE526I	ACGT	3 cut(s)	264, 281, 411
Hsp92I	GRCGYC	2 cut(s)	291, 411
HspAI	GCGC	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	77
Lsp1109I	GCAGC	2 cut(s)	54, 327
MaeI	CTAG	2 cut(s)	360, 454
MaeII	ACGT	3 cut(s)	264, 281, 411
MalI	GATC	1 cut(s)	79
MboI	GATC	1 cut(s)	77
MboII	GAAGA	2 cut(s)	347, 365
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	219
MlyI	GAGTC	3 cut(s)	65, 143, 388
MroI	TCCGGA	1 cut(s)	74
MspI	CCGG	5 cut(s)	75, 84, 143, 322, 332
MspR9I	CCNGG	6 cut(s)	84, 122, 143, 323, 332, 438
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	2 cut(s)	122, 438
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	5 cut(s)	34, 39, 189, 198, 312
NciI	CCSGG	4 cut(s)	84, 143, 323, 332
NdeII	GATC	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 270
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	4 cut(s)	114, 210, 363, 441
PflFI	GACNNNGTC	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	41, 44, 317, 449
PleI	GAGTC	3 cut(s)	65, 142, 388
PmaCI	CACGTG	2 cut(s)	265, 282
PmlI	CACGTG	2 cut(s)	265, 282
PpsI	GAGTC	3 cut(s)	65, 142, 388
Ppu21I	YACGTR	2 cut(s)	265, 282
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	120, 436
PspCI	CACGTG	2 cut(s)	265, 282
PspGI	CCWGG	2 cut(s)	120, 436
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	413
SalI	GTCGAC	2 cut(s)	275, 326
SatI	GCNGC	4 cut(s)	40, 43, 316, 448
Sau3AI	GATC	1 cut(s)	77
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	3 cut(s)	65, 143, 388
ScrFI	CCNGG	6 cut(s)	84, 122, 143, 323, 332, 438
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	8 cut(s)	47, 161, 228, 267, 284, 305, 320, 414
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	226
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	4 cut(s)	39, 87, 232, 445
SspMI	CTAG	2 cut(s)	360, 454
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	6 cut(s)	82, 120, 141, 321, 330, 436
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	3 cut(s)	267, 284, 414
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	4 cut(s)	114, 210, 363, 441
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	3 cut(s)	42, 315, 447
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	35
Tth111I	GACNNNGTC	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	226
XmiI	GTMKAC	2 cut(s)	276, 327
XspI	CTAG	2 cut(s)	360, 454
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.