Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Forward (+)

324627 .. 325058

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026064

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTAATTTTTCATTACCATCTAGGTACCAGAACCAGAGCAGACATTGCTACAACGTCTGCTTCACCGCCGCCACCTGTTAATGTGGACACCGCCGAGAAACCCAAGTCGTTCTGGCCCAGCATGGCCATAATGGTCGGAGTTCTGACGACTCTGTTCTCTTTCACGTTTCTTCTCCTCCTCTACGCCAAGCACTGCAAGCGTGGCAGCTTCGTCGTCATCAGAAGAACTGCCGACTCCAGACCTCCAGGCGGGGCGGGTCTCCGTAAAAACTCCGGAATCGACCTGGCCATCATCGAGTCCCTCCGGTTTTCCGGTTCAGGTCGCTCCGGGGACACAAGGATGGCCTCGAATGCTCCGTCTGCCTCACCCGATTCGAGCCTACCGAGGTTCTCCGCCTCCTCCCAAAATGCAAGCATGCCTTCCACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

144

Amino Acids

15.26

Weight (kDa)

10.6

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AccIII	TCCGGA	1 cut(s)	275
AciI	CCGC	6 cut(s)	68, 71, 93, 252, 257, 396
AcoI	YGGCCR	2 cut(s)	126, 288
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	247, 285
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	266
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	4 cut(s)	116, 126, 288, 345
ApeKI	GCWGC	1 cut(s)	207
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
Asp718I	GGTACC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	57, 360
BalI	TGGCCA	2 cut(s)	128, 290
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	3 cut(s)	27, 299, 337
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	2 cut(s)	249, 287
BcnI	CCSGG	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	2 cut(s)	71, 208
BlsI	GCNGC	2 cut(s)	72, 209
Bme1390I	CCNGG	3 cut(s)	249, 287, 331
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	3 cut(s)	249, 287, 331
BpmI	CTGGAG	2 cut(s)	223, 231
BpuMI	CCSGG	1 cut(s)	331
BsaAI	YACGTR	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	330, 386
BsaWI	WCCGGW	3 cut(s)	275, 306, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	275
BseBI	CCWGG	2 cut(s)	249, 287
BseDI	CCNNGG	2 cut(s)	330, 386
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	45
BseRI	GAGGAG	3 cut(s)	167, 170, 391
BseXI	GCAGC	1 cut(s)	219
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	4 cut(s)	118, 128, 290, 347
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	4 cut(s)	276, 307, 315, 330
BslFI	GGGAC	2 cut(s)	286, 347
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	2 cut(s)	286, 347
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	4 cut(s)	118, 128, 290, 347
Bso31I	GGTCTC	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	275
BspACI	CCGC	6 cut(s)	68, 71, 93, 252, 257, 396
BspANI	GGCC	4 cut(s)	118, 128, 290, 347
BspEI	TCCGGA	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	330, 386
Bst2UI	CCWGG	2 cut(s)	249, 287
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	200, 415, 419
BstF5I	GGATG	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 199, 204, 353, 362
BstNI	CCWGG	2 cut(s)	249, 287
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	247, 285, 329
BstV1I	GCAGC	1 cut(s)	219
BsuRI	GGCC	4 cut(s)	118, 128, 290, 347
BtsCI	GGATG	1 cut(s)	348
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	3 cut(s)	200, 415, 419
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	2 cut(s)	124, 418
CviJI	RGCY	6 cut(s)	118, 128, 210, 290, 347, 381
CviKI_1	RGCY	6 cut(s)	118, 128, 210, 290, 347, 381
CviQI	GTAC	1 cut(s)	27
EaeI	YGGCCR	2 cut(s)	126, 288
EciI	GGCGGA	1 cut(s)	385
Eco31I	GGTCTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	247, 285
FaeI	CATG	2 cut(s)	127, 421
FaiI	YATR	3 cut(s)	125, 131, 419
FalI	AAGNNNNNCTT	1 cut(s)	406
FaqI	GGGAC	2 cut(s)	286, 347
FatI	CATG	2 cut(s)	123, 417
FauI	CCCGC	2 cut(s)	245, 250
Fnu4HI	GCNGC	2 cut(s)	71, 208
FokI	GGATG	1 cut(s)	355
Fsp4HI	GCNGC	2 cut(s)	71, 208
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	2 cut(s)	71, 208
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	2 cut(s)	223, 231
HaeIII	GGCC	4 cut(s)	118, 128, 290, 347
HapII	CCGG	4 cut(s)	276, 307, 315, 330
Hin1II	CATG	2 cut(s)	127, 421
HinfI	GANTC	5 cut(s)	151, 236, 279, 299, 374
HpaII	CCGG	4 cut(s)	276, 307, 315, 330
HphI	GGTGA	2 cut(s)	57, 360
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	140, 147, 224
Hpy188III	TCNNGA	2 cut(s)	240, 276
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	432
HpyCH4IV	ACGT	3 cut(s)	56, 167, 428
HpyCH4V	TGCA	2 cut(s)	198, 413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 199, 204, 353, 362
HpySE526I	ACGT	3 cut(s)	56, 167, 428
Hsp92II	CATG	2 cut(s)	127, 421
Kpn2I	TCCGGA	1 cut(s)	275
KpnI	GGTACC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	332, 361
Lsp1109I	GCAGC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	3 cut(s)	56, 167, 428
MboII	GAAGA	2 cut(s)	164, 237
MlsI	TGGCCA	2 cut(s)	128, 290
MluCI	AATT	1 cut(s)	6
MluNI	TGGCCA	2 cut(s)	128, 290
MlyI	GAGTC	3 cut(s)	145, 230, 308
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	9 cut(s)	188, 191, 255, 314, 358, 376, 381, 409, 412
Mox20I	TGGCCA	2 cut(s)	128, 290
MroI	TCCGGA	1 cut(s)	275
MscI	TGGCCA	2 cut(s)	128, 290
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	2 cut(s)	128, 290
MspI	CCGG	4 cut(s)	276, 307, 315, 330
MspR9I	CCNGG	3 cut(s)	249, 287, 331
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	249, 287
MwoI	GCNNNNNNNGC	5 cut(s)	47, 199, 204, 353, 362
NciI	CCSGG	1 cut(s)	331
NlaIII	CATG	2 cut(s)	127, 421
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	121
NspI	RCATGY	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	2 cut(s)	356, 383
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	279, 374
PkrI	GCNGC	2 cut(s)	72, 209
PleI	GAGTC	3 cut(s)	145, 230, 307
PpsI	GAGTC	3 cut(s)	145, 230, 307
Ppu21I	YACGTR	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	247, 285
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	247, 285
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	117
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	71, 208
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	3 cut(s)	145, 230, 308
ScrFI	CCNGG	3 cut(s)	249, 287, 331
SmiMI	CAYNNNNRTG	1 cut(s)	341
SphI	GCATGC	1 cut(s)	421
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	6 cut(s)	68, 71, 93, 252, 257, 396
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	3 cut(s)	247, 285, 329
TaiI	ACGT	3 cut(s)	59, 170, 431
TaqI	TCGA	4 cut(s)	282, 297, 350, 377
TasI	AATT	1 cut(s)	6
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	279, 374
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	1 cut(s)	207
TspGWI	ACGGA	2 cut(s)	254, 348
TspRI	CASTG	1 cut(s)	200
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.