Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002352

Physical Location & Seq

Genomic Coordinates Reverse (-)

26214845 .. 26215183

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1242200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTCTGCCTGACCCGGTTCGACCAAACCGAGGTCCTCCACCTCCTCCTAAAATGCAAACATGTGTTCCACGTCGAGTGCGTCGATACGTGGCTCGACGCCCACTCCACCTGCCCACTTTACCGGTACCAGGTCGACCTGGAAGATGTCATCTTAGTCGACGACGCCGCAAAGGTCTTGCAACCGAAGAACAGCGACGTCGTTATAGAGATCGACAACGACCCAGGTTTTCGTCAGATTTCGGGGCGGCACTCGTTCGCCGGAGAGCACAGATCAGGACATCATCAAATCCAAACGTGGTCGTTTAGGAAGTGGCTGGACAGTTGGACGACATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

113

Amino Acids

13.12

Weight (kDa)

5.83

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	2 - 40	7.3e-11	Ring finger domain
zf-C3HC4_2	PF13923	2 - 40	2.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	2 - 40	4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	12 - 40	2.7e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05810
fragaria_vesca	FvH4_4g06660
malus_domestica	MD13G1236900.v1.1 MD16G1242200.v1.1
prunus_persica	Prupe.1G069300_v2.0.a1
pyrus_communis	pycom13g20980 pycom16g20300
rosa_chinensis	RchiOBHm_Chr3g0495141 RchiOBHm_Chr4g0398561
rosa_laevigata	RLG00000009344 RLG00000026064 RLG00000029692 RLG00000030599 RLG00000032695 RLG00000032696
rosa_multiflora	Rmu_co8139468.1_g000001 Rmu_co8270033.1_g000001 Rmu_co8275827.1_g000001 Rmu_sc0000185.1_g000029 Rmu_sc0000990.1_g000016 Rmu_sc0005217.1_g000007 Rmu_sc0005996.1_g000027 Rmu_sc0009001.1_g000015 Rmu_sc0013727.1_g000001 Rmu_sc0016350.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343530
rosa_rugosa	Rorug04G0009400
rosa_samantha	Rh1AG207300 Rh2AG231000 Rh2AG449700 Rh2CG436600 Rh2DG238800 Rh3DG271300 Rh4AG087300 Rh4BG083900 Rh4CG095500 Rh4DG078800 Rh4DG124400 Rh5DG085200 Rh6BG230400
rosa_wichuraiana	Rw1G018260 Rw1G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	119
AatII	GACGTC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	119
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AccI	GTMKAC	2 cut(s)	135, 159
AciI	CCGC	2 cut(s)	168, 247
AcyI	GRCGYC	3 cut(s)	99, 165, 198
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	2 cut(s)	31, 130
AflIII	ACRYGT	1 cut(s)	61
AgeI	ACCGGT	1 cut(s)	123
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	3 cut(s)	129, 138, 223
Alw21I	GWGCWC	1 cut(s)	270
AsiGI	ACCGGT	1 cut(s)	123
Asp718I	GGTACC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	270
BciT130I	CCWGG	3 cut(s)	131, 140, 225
BcnI	CCSGG	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	168, 248
BlsI	GCNGC	2 cut(s)	169, 249
Bme1390I	CCNGG	4 cut(s)	16, 131, 140, 225
Bme18I	GGWCC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	4 cut(s)	16, 131, 140, 225
BpuMI	CCSGG	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	90
BsaHI	GRCGYC	3 cut(s)	99, 165, 198
BsaJI	CCNNGG	2 cut(s)	30, 223
BsaWI	WCCGGW	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 130
Bse118I	RCCGGY	1 cut(s)	123
BseBI	CCWGG	3 cut(s)	131, 140, 225
BseDI	CCNNGG	2 cut(s)	30, 223
BseLI	CCNNNNNNNGG	2 cut(s)	31, 130
BseRI	GAGGAG	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	126
BshTI	ACCGGT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	16, 124, 261
BslI	CCNNNNNNNGG	2 cut(s)	31, 130
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	210, 272
BspACI	CCGC	2 cut(s)	168, 247
BspLI	GGNNCC	1 cut(s)	128
BspMI	ACCTGC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	30, 223
BssMI	GATC	2 cut(s)	210, 272
BssNI	GRCGYC	3 cut(s)	99, 165, 198
Bst2UI	CCWGG	3 cut(s)	131, 140, 225
Bst4CI	ACNGT	1 cut(s)	323
BstACI	GRCGYC	3 cut(s)	99, 165, 198
BstBAI	YACGTR	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	154
BstKTI	GATC	2 cut(s)	213, 275
BstMBI	GATC	2 cut(s)	210, 272
BstNI	CCWGG	3 cut(s)	131, 140, 225
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	4 cut(s)	14, 129, 138, 223
BtrI	CACGTC	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	3 cut(s)	70, 107, 173
CsiI	ACCWGGT	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	127
CspAI	ACCGGT	1 cut(s)	123
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	2 cut(s)	94, 316
CviKI_1	RGCY	2 cut(s)	94, 316
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	2 cut(s)	212, 274
DpnII	GATC	2 cut(s)	210, 272
Eco47I	GGWCC	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	3 cut(s)	129, 138, 223
FaeI	CATG	1 cut(s)	65
FaiI	YATR	2 cut(s)	63, 206
FatI	CATG	1 cut(s)	61
FblI	GTMKAC	2 cut(s)	135, 159
Fnu4HI	GCNGC	2 cut(s)	168, 248
Fsp4HI	GCNGC	2 cut(s)	168, 248
GluI	GCNGC	2 cut(s)	168, 248
HapII	CCGG	3 cut(s)	16, 124, 261
HgaI	GACGC	3 cut(s)	70, 107, 173
Hin1I	GRCGYC	3 cut(s)	99, 165, 198
Hin1II	CATG	1 cut(s)	65
HincII	GTYRAC	2 cut(s)	136, 160
HindII	GTYRAC	2 cut(s)	136, 160
HpaII	CCGG	3 cut(s)	16, 124, 261
Hpy166II	GTNNAC	2 cut(s)	136, 160
Hpy188I	TCNGA	2 cut(s)	237, 338
Hpy188III	TCNNGA	1 cut(s)	276
Hpy8I	GTNNAC	2 cut(s)	136, 160
Hpy99I	CGWCG	7 cut(s)	77, 86, 101, 164, 167, 200, 203
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	4 cut(s)	72, 89, 198, 296
HpyCH4V	TGCA	2 cut(s)	57, 181
HpyF3I	CTNAG	1 cut(s)	154
HpySE526I	ACGT	4 cut(s)	72, 89, 198, 296
Hsp92I	GRCGYC	3 cut(s)	99, 165, 198
Hsp92II	CATG	1 cut(s)	65
KpnI	GGTACC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	210, 272
MabI	ACCWGGT	1 cut(s)	129
MaeII	ACGT	4 cut(s)	72, 89, 198, 296
MalI	GATC	2 cut(s)	212, 274
MboI	GATC	2 cut(s)	210, 272
MboII	GAAGA	2 cut(s)	155, 199
MhlI	GDGCHC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	4 cut(s)	25, 47, 53, 56
MspI	CCGG	3 cut(s)	16, 124, 261
MspR9I	CCNGG	4 cut(s)	16, 131, 140, 225
MvaI	CCWGG	3 cut(s)	131, 140, 225
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	210, 272
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	128
NspI	RCATGY	1 cut(s)	65
PaqCI	CACCTGC	1 cut(s)	119
PciI	ACATGT	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 78, 81
PinAI	ACCGGT	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	169, 249
Ppu21I	YACGTR	1 cut(s)	90
PpuMI	RGGWCCY	1 cut(s)	34
PscI	ACATGT	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	3 cut(s)	129, 138, 223
PspGI	CCWGG	3 cut(s)	129, 138, 223
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	34
PspPPI	RGGWCCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SalI	GTCGAC	2 cut(s)	134, 158
SatI	GCNGC	2 cut(s)	168, 248
Sau3AI	GATC	2 cut(s)	210, 272
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	4 cut(s)	16, 131, 140, 225
SduI	GDGCHC	1 cut(s)	270
SexAI	ACCWGGT	1 cut(s)	129
SinI	GGWCC	1 cut(s)	34
SsiI	CCGC	2 cut(s)	168, 247
StyD4I	CCNGG	4 cut(s)	14, 129, 138, 223
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	4 cut(s)	75, 92, 201, 299
TaqI	TCGA	7 cut(s)	21, 75, 84, 96, 135, 159, 213
TauI	GCSGC	2 cut(s)	170, 250
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	65
XmiI	GTMKAC	2 cut(s)	135, 159
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.